Screening and identification of B cell epitopes of structural proteins of foot-and-mouth disease virus serotype Asia1

Veterinary Microbiology

Volumn 140, Issue 1-2, 2010, Pages 25-33

  Zhang, Zhong Wang ^a   Zhang, Yong Guang ^a   Wang, Yong Lu ^a   Pan, Li ^a   Fang, Yu Zhen ^a   Jiang, Shou Tian ^a   Lü, Jian Liang ^a   Zhou, Peng ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

B cell epitope mapping; Foot and mouth disease virus; Serotype Asia1; Structural proteins

Indexed keywords

GLUTATHIONE TRANSFERASE; HYBRID PROTEIN; P1 POLYPROTEIN; UNCLASSIFIED DRUG; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ANTIGENICITY; ARTICLE; BIOINFORMATICS; CONTROLLED STUDY; ENZYME LINKED IMMUNOSORBENT ASSAY; EPITOPE MAPPING; FOOT AND MOUTH DISEASE VIRUS; MOLECULAR BIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN STRUCTURE; SCREENING; SEROTYPE; VIRUS IDENTIFICATION; WESTERN BLOTTING;

ANIMALS; ANTIGENS, VIRAL; BASE SEQUENCE; CAPSID PROTEINS; ENZYME-LINKED IMMUNOSORBENT ASSAY; EPITOPES, B-LYMPHOCYTE; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; MOLECULAR SEQUENCE DATA; RABBITS; SEROTYPING; VIRAL STRUCTURAL PROTEINS;

FOOT-AND-MOUTH DISEASE VIRUS; ORYCTOLAGUS CUNICULUS; PROTEA;

EID: 71849085140     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2009.07.011     Document Type: Article

References (48)

1. Barnett P.V., Ouldridge E.J., Rowlands D.J., Brown F., and Parry N.R. Neutralizing epitopes of type O foot-and-mouth disease virus. I. Identification and characterization of three functionally independent, conformational sites. J. Gen. Virol. 70 (1989) 1483-1491
2. 12 foot-and-mouth disease virus. J. Virol. 63 (1989) 2143-2151
3. Bittle J.L., Houghten R.A., Alexander H., Shinnick T.M., Sutcliffe J.G., and Lerner R.A. Protection against foot-and-mouth disease virus by immunization with a chemically synthesized peptide predicted from the viral nucleotide sequence. Nature 298 (1982) 30-33
4. Bolwell C., Clarke B.E., Parry N.R., Ouldridge E.J., Brown F., and Rowlands D.J. Epitope mapping of foot-and-mouth disease virus with neutralizing monoclonal antibodies. J. Gen. Virol. 70 (1989) 59-68
5. Brooksby, J.B., Roger, J., 1957. Methods of typing and cultivation of foot and mouth disease virus. Project 208 of OEEC, Paris, pp. 31-34.
6. Butchaiah G., Card J.L., and Morgan D.O. Antigenic relationships of foot-and-mouth disease virus serotype Asia-1 isolates demonstrated by monoclonal antibodies. Vet. Immunol. Immunopathol. 30 (1992) 275-292
7. Butchaiah G., and Morgan D.O. Neutralization antigenic sites on type Asia-1 foot-and-mouth disease virus defined by monoclonal antibody-resistant variants. Virus Res. 52 (1997) 183-194
8. Butchaiah G., and Rao B.U. Hybridoma cell lines secreting monoclonal antibodies to foot-and-mouth disease virus type Asia-1. Acta Virol. 33 (1989) 121-130
9. Chou P.Y., and Fasman G.D. Prediction of the secondary structure of proteins from their amino acid sequence. Adv. Enzymol. 47 (1978) 45-148
10. Crowther J.R., Farias S., Carpenter W.C., and Samuel A.R. Identification of a fifth neutralizable site on type O foot-and-mouth disease virus following characterization of single and quintuple monoclonal antibody escape mutants. J. Gen. Virol. 74 (1993) 1547-1553
11. Crowther J.R., Rowe C.A., and Butcher R. Characterization of monoclonal antibodies against a type SAT2 foot-and-mouth disease virus. Epidemiol. Infect. 111 (1993) 391-406
12. Emini E.A., Hughes J.V., Perlow D.S., and Boger J. Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. J. Virol. 55 (1985) 836-839
13. Freiberg B., Höhlich B., Haas B., Saalmüller A., Pfaff E., and Marquardt O. Type-independent detection of foot-and-mouth disease virus by monoclonal antibodies that bind to amino-terminal residues of capsid protein VP2. J. Virol. Methods 92 (2001) 199-205
14. Garnier J., and Robson B. The GOR method for predicting secondary structures in proteins. In: Fasman G.D. (Ed). Prediction of Protein Structure and the Principles of Protein Conformation vol. 11 (1989), Plenum Press, New York 417-465
15. Grazioli, S., Fallacara, F., Brocchi, E., 2003. Mapping of neutralising sites on FMD virus type Asia1 and relationships with sites described in other serotypes. Report of the Session of the Research Group of the Standing Committee of the European Commission of Foot and Mouth Disease. Appendix 44, pp. 277-287.
16. Greenbaum J.A., Andersen P.H., Blythe M., Bui H.H., Cachau R.E., Crowe J., Davies M., Kolaskar A.S., Lund O., Morrison S., Mumey B., Ofran Y., Pellequer J.L., Pinilla C., Ponomarenko J.V., Raghava G.P., van Regenmortel M.H., Roggen E.L., Sette A., Schlessinger A., Sollner J., Zand M., and Peters B. Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. J. Mol. Recognit. 20 (2007) 75-82
17. Hopp T.P., and Woods K.R. Prediction of protein antigenic determinants from amino acid sequences. Proc. Natl. Acad. Sci. U.S.A. 78 (1981) 3824-3828
18. Jackson T., King A.M., Stuart D.I., and Fry E. Structure and receptor binding. Virus Res. 91 (2003) 33-46
19. Jameson B.A., and Wolf H. The antigenic index: a novel algorithm for predicting antigenic determinants. Comput. Appl. Biosci. 4 (1988) 181
20. Karplus P.A., and Schulz G.E. Prediction of chain flexibility in proteins: a tool for the selection of peptide antigens. Naturwissenschaften 72 (1985) 212-213
21. Kolaskar A.S., and Kulkarni-Kale U. Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus. Virology 261 (1999) 31-42
22. Kolaskar A.S., and Tongaonkar P.C. A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett. 276 (1990) 172-174
23. Kyte J., and Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157 (1982) 105-132
24. Margalit H., Spouge J.L., Cornette J.L., Cease K.B., Delisi C., and Berzofsky J.A. Prediction of immunodominant helper T cell antigenic sites from the primary sequence. J. Immunol. 138 (1987) 2213-2229
25. Marquardt O., Rahman M.M., and Freiberg B. Genetic and antigenic variance of foot-and-mouth disease virus Asia-1. Arch Virol. 145 (2000) 149-157
26. Mateu M.G., Camarero J.A., Giralt E., Andreu D., and Domingo E. Direct evaluation of the immunodominance of a major antigenic site of foot-and-mouth disease virus in a natural host. Virology 206 (1995) 298-306
27. Mateu M.G., Martinez M.A., Rocha E., Andreu D., Parejo J., Giralt E., Sobrino F., and Domingo E. Implications of a quasispecies genome structure: effect of frequent, naturally occurring amino acid substitutions on the antigenicity of foot-and-mouth disease virus. Proc. Natl. Acad. Sci. U.S.A. 86 (1989) 5883-5887
28. Mateu M.G., Rocha E., Vicente O., Vayreda F., Navalpotro C., Andreu D., Pedroso E., Giralt E., Enjuanes L., and Domingo E. Reactivity with monoclonal antibodies of viruses from an episode of foot-and-mouth disease. Virus Res. 8 (1987) 261-274
29. McCahon D., Crowther J.R., Belsham G.J., Kitson J.D.A., Duchesne M., Have P., Meloen R.H., Morgan D.O., and De Simone F. Evidence for at least four antigenic sites on type O foot-and-mouth disease virus involved in neutralization: identification by single and multiple site monoclonal antibody-resistant mutants. J. Gen. Virol. 70 (1989) 639-645
30. Morrell D.J., Mellur E.J.C., Rowlands D.J., and Brown F. Surface structure and RNA-protein interaction of foot and mouth disease virus. J. Gen. Virol. 68 (1987) 1649-1658
31. Park J.H., Kim S.J., Oem J.K., Lee K.N., Kim Y.J., Kye S.J., Park J.Y., and Joo Y.S. Enhanced immune response with foot and mouth disease virus VP1 and interleukin-1 fusion genes. J. Vet. Sci. 7 (2006) 257-262
32. Parker J.M., Guo D., and Hodges R.S. New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry 25 (1986) 5425-5432
33. Parry N.R., Barnett P.V., Ouldridge E.J., Rowlands D.J., and Brown F. Neutralization epitopes of type O foot-and-mouth disease virus. II. Mapping three conformational sites with synthetic peptide reagents. J. Gen. Virol. 70 (1989) 1493-1503
34. Pfaff E., Thiel H.J., Beck E., Strohmaier K., and Schaller H. Analysis of neutralizing epitopes of foot-and-mouth disease virus. J. Virol. 62 (1988) 2033-2040
35. Rothbard J.B., and Taylor W.R. A sequence pattern common to T cell epitopes. EMBO J. 7 (1988) 93-100
36. Sobrino F., Sáíz M., Jiménez-Clavero M.A., Núñez J.I., Rosas M.F., Baranowski E., and Ley V. Foot and mouth disease virus: a long known virus, but a current threat. Vet. Res. 32 (2001) 1-30
37. Stave J.W., Card J.L., Morgan D.O., and Vakharia V.N. Neutralization sites of type O1 foot-and-mouth disease virus defined by monoclonal antibodies and neutralization-escape virus variants. Virology 162 (1988) 21-29
38. Stille C.J., Thomas L.J., Reyes V.E., and Humphreys R.E. Hydrophobic strip-of-helix algorithm for selection of T cell-presented peptides. Mol. Immunol. 24 (1987) 1021-1027
39. Strohmaier K., Franze R., and Adman K.H. Location and characterization of the antigenic portion of the FMD immunizing protein. J. Gen. Virol. 59 (1982) 295-306
40. Sturniolo T., Bono E., Ding J., Raddrizzani L., Tuereci O., Sahin U., Braxenthaler M., Gallazzi F., Protti M.P., Sinigaglia F., and Hammer J. Generation of tissue-specific and promiscuous HLA ligand data bases using DNA microarrays and virtual HLA class II matrices. Nat. Biotechnol. 17 (1999) 555-561
41. Thomas A.A., Woortmeijer R.J., Puijk W., and Barteling S.J. Antigenic sites on foot-and-mouth disease virus type A10. J. Virol. 62 (1988) 2782-2789
42. Valarcher J.F., Knowles N.J., Ferris N.P., Paton D.J., Zakharov V., Sherbakov A., Shang Y.J., Liu Z.X., Liu X.T., Sanyal A., Hemadri D., Tosh C., and Rasool T.J. Recent spread of FMD virus serotype Asia 1. Vet. Rec. 157 (2005) 30
43. Welling G.W., Weijer W.J., van der Zee R., and Welling-Wester S. Prediction of sequential antigenic regions in proteins. FEBS Lett. 188 (1985) 215-218
44. Xiao C., Jin H., Hu Y., Kang Y., Wang J., Du X., Yang Y., She R., and Wang B. Enhanced protective efficacy and reduced viral load of foot-and-mouth disease DNA vaccine with co-stimulatory molecules as the molecular adjuvants. Antiviral Res. 76 (2007) 11-20
45. Xie Q.G., McCahon D., Crowther J.R., Belsham G.J., and McCullough K.C. Neutralization of foot-and-mouth disease virus can be mediated through any of at least three separate antigenic sites. J. Gen. Virol. 68 (1987) 1637-1647
46. Yun T., Liu G.Q., Leng Q.W., Guo H.C., Liu Z.X., Zhang J.N., and Xie Q.G. Prediction of secondary structure and B cell epitope for capsid protein of FMDV. Chin. J. Vet. Sci. Technol. 34 (2004) 23-29
47. Zhou J.H., Cong G.Z., Gao S.D., and Chang H.Y. Construction of VP1 protein and prediction of B cell epitopes in VP1 from a foot-and-mouth disease virus strain OA/58. Acta Agric. Boreali-Sin. 22 (2007) 176-179
48. Zhang Y., Wang Y.L., Zhang Y.G., Pan L., Fang Y.Z., Liu L.K., Jiang S.T., Lü J.L., Zhang Z.W., Zhang S.G., Li Z.F., and Du J.X. Construction of VP1 and prediction of B cell epitopes from FMDV AF72. Chin. J. Biotechnol. Bull. 6 (2008) 158-163