Population genetics of the eastern oyster crassostrea virginica (gmelin, 1791) in the gulf of mexico

Journal of Shellfish Research

Volumn 28, Issue 4, 2009, Pages 855-864

  Varney, Robin L ^a   Galindo Sánchez, Clara E ^b,c   Cruz, Pedro ^c   Gaffney, Patrick M ^a  

^a UNIVERSITY OF DELAWARE   (United States)

^b IFREMER   (France)

^c Centro de Investigacion Cientifica y de Educacion Superior de Ensenada Unidad La Paz   (Mexico)

Author keywords

Crassostrea virginica; Genetics; Gulf of Mexico; Mitochondrial DNA; Oyster; Single nucleotide polymorphism

Indexed keywords

CRASSOSTREA VIRGINICA; OSTREIDAE;

EID: 71649089462     PISSN: 07308000     EISSN: None     Source Type: Journal    
DOI: 10.2983/035.028.0415     Document Type: Article

References (37)

1. Arnaud-Haond, S., V. Vonau, C. Rouxel, F. Bonhomme, J. Prou, E. Goyard & P. Boudry. 2008. Genetic structure at different spatial scales in the pearl oyster (Pinctada margaritifera cumingii) in French Polynesian lagoons: Beware of sampling strategy and genetic patchiness. Mar. Biol. 155: 147-157.
2. Bandelt, H.-J., P. Forster & A. Röhl. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16: 37-48.
3. Belkhir, K., P. Borsa, L. Chikhi, M. Raufaste & F. Bonhomme. 2004. GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Montpellier, France: Laboratoire Génome, Populations, Interactions, CNRSUMR5171, Université de Montpellier II.
4. Benjamini, Y. & D. Yekutieli. 2001. The control of the false discovery rate in multiple testing under dependency. Ann. Stat. 29: 1165-1188.
5. Birky, C. W., Jr., P. Fuerst & T. Maruyama. 1989. Organelle gene diversity under migration, mutation and drift: Equilibrium expectations, approach to equilibrium, effects of heteroplasmic cells, and comparison to nuclear genes. Genetics 121: 613-627.
6. Buroker, N. E. 1983. Population genetics of the American oyster Crassostrea virginica along the Atlantic coast and the Gulf of Mexico. Mar. Biol. 75: 99-112.
7. Chapuis, M.-P. & A. Estoup. 2007. Microsatellite null alleles and estimation of population differentiation.Mol. Biol. Evol. 24: 621-631.
8. Cunningham, C. W. & T. M. Collins. 1994. Developing model systems for molecular biogeography: vicariance and interchange in marine invertebrates. In: B. Schierwater, B. Streit, G. P. Wagner & R. DeSalle, editors. Molecular ecology and evolution: Approaches and applications. Basel: Birkhäuser Verlag. pp. 405-433.
9. Excoffier, L., G. Laval & S. Schneider. 2005. Arlequin version 3.0: An integrated software package for population genetics data analysis. J. Exp. Zool. 1: 47-50.
10. Gaffney, P. M. 1996. Biochemical and population genetics. In: V. S. Kennedy, R. I. E. Newell & A. F. Eble, editors. The eastern oyster Crassostrea virginica. College Park, MD: Maryland Sea Grant College. pp. 423-441.
11. Galindo-Sá nchez, C. E., P. M. Gaffney, C. I. Pérez-Rostro, J. De la Rosa-Vé lez, J. Candela & P. Cruz. 2008. Assessment of genetic diversity of the eastern oyster Crassostrea virginica in Veracruz, Mexico using microsatellite markers. J. Shellfish Res. 27: 721-727.
12. Goudet, J. 1995. FSTAT (version 1.2): A computer program to calculate F-statistics. J. Hered. 86: 485-486.
13. Grady, J. M., T. M. Soniat & J. S. Rogers. 1989. Genetic variability and gene flow in populations of Crassostrea virginica (Gmelin) from the northern Gulf of Mexico. J. Shellfish Res. 8: 227-232.
14. Groue, K. J. & L. J. Lester. 1982. A morphological and genetic analysis of geographic variation among oysters in the Gulf of Mexico. Veliger 24: 331-335.
15. Hardy, O. J. & X. Vekemans. 2002. SPAGeDi: A versatile computer program to analyse spatial genetic structure at the individual or population levels. Mol. Ecol. Notes 2: 618-620.
16. Hare, M. P. & J. C. Avise. 1996. Molecular genetic analysis of a stepped multilocus cline in the American oyster (Crassostrea virginica). Evolution 50: 2305-2315.
17. Hedgecock, D. & N. B. Okazaki. 1984. Genetic diversity within and between populations of American oysters (Crassostrea). Malacologia 25: 535-549.
18. Hoover, C. A. & P. M. Gaffney. 2005. Geographic variation in nuclear genes of the eastern oyster, Crassostrea virginica Gmelin. J. Shellfish Res. 24: 103-112.
19. Johnson, M. S. & R. Black. 1982. Chaotic genetic patchiness in an intertidal limpet, Siphonaria sp. Mar. Biol. 70: 157-164.
20. King, T. L., R. Ward & E. G. Zimmerman. 1994. Population structure of eastern oysters (Crassostrea virginica) inhabiting the Laguna Madre, Texas, and adjacent bay systems. Can. J. Fish. Aquat. Sci. 51(Suppl. 1): 215-222.
21. Li, Q., Z. Liu, H. Monroe & C. T. Culiat. 2002. Integrated platform for detection of DNA sequence variants using capillary array electrophoresis. Electrophoresis 23: 1499-1511.
22. Librado, P. & J. Rozas. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
23. Narum, S. R. 2006. Beyond Bonferroni: less conservative analyses for conservation genetics. Conserv. Genet. 7: 783-787.
24. Nei, M. 1978. Estimation of average heterozygosity and genetic distances from a small number of individuals. Genetics 89: 583-590.
25. Neigel, J. E. 2009. Population genetics and biogeography of the Gulf of Mexico. In: D. F. Felder & C. K. Camp, editors. Gulf of Mexico: Its origins, waters, and biota. College Station, TX: Texas A & M University Press.
26. Pulley, T. E. 1952. Distribution of mollusks in the Gulf of Mexico. Rep. Am. Malac. Union 1952: 2-3.
27. Reeb, C. A. & J. C. Avise. 1990. A genetic discontinuity in a continuously distributed species: Mitochondrial DNA in the American oyster, Crassostrea virginica. Genetics 124: 397-406.
28. Rohlf, F. J. 2005. NTSYSpc: Numerical taxonomy system, version 2.11x. Setauket, NY: Exeter Publishing.
29. Rosa-Vé lez, J. 1986. Variabilidad genetica poblacional en ostiones de la especie Crassostrea virginica del Golfo de Mexico. Ph.D. diss. Colegio de Ciencias y Humanidades, Mexico: Universidad Nacional Autónoma de México. 124 pp.
30. Rousset, F. 2008. GENEPOP'007: A complete re-implementation of the GENEPOP software for Windows and Linux. Mol. Ecol. Res. 8: 103-106.
31. Stauber, L. A. 1950. The problem of physiological species with special reference to oysters and oyster drills. Ecology 31: 109-118.
32. Van Oosterhout, C., W. F. Hutchinson, D. P. M. Wills & P. Shipley. 2004. MICRO-CHECKER: Software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
33. Varney, R. L. 2009. Assessment of nuclear DNA variation and population structure in the eastern oyster Crassostrea virginica through discovery and analysis of single nucleotide polymorphisms (SNPs). Ph.D. diss. College of Earth, Ocean, and Environment. Newark, DE: University of Delaware.
34. Varney, R. L. & P. M. Gaffney. 2008. Assessment of population structure in Crassostrea virginica throughout the species range using single nucleotide polymorphisms. J. Shellfish Res. 27: 1061.
35. Wakefield, J. R. & P. M. Gaffney. 1996. DGGE reveals additional population structure in American oyster (Crassostrea virginica) populations. J. Shellfish Res. 15: 513.
36. Weir, B. S. & C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
37. Wilkinson, L. 1990. SYSTAT 11Richmond,CA: SYSTAT Software, Inc.