Assessment of genetic diversity of the eastern oyster Crassostrea virginica in Veracruz, Mexico using microsatellite markers

Journal of Shellfish Research

Volumn 27, Issue 4, 2008, Pages 721-727

  Galindo Sánchez, Clara E ^a,c   Gaffney, Patrick M ^b   Pérez Rostro, Carlos I ^d   De La Rosa Vélez, Jorge ^c   Candela, Julio ^e   Cruz, Pedro ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS DEL NOROESTE   (Mexico)

^b UNIVERSITY OF DELAWARE   (United States)

^c UNIVERSIDAD AUTÓNOMA DE BAJA CALIFORNIA   (Mexico)

^d Instituto Tecnológico del Mar ^*  (Mexico)

^e CENTRO DE INVESTIGACIÓN CIENTÍFICA Y DE EDUCACIÓN SUPERIOR DE ENSENADA   (Mexico)

Author keywords

Chaotic genetic patchiness; Crassostrea virginica; Gene flow; Genetic diversity; Microsatellites; Null alleles; Oyster

Indexed keywords

CRASSOSTREA VIRGINICA; OSTREIDAE;

EID: 50049110314     PISSN: 07308000     EISSN: None     Source Type: Journal    
DOI: 10.2983/0730-8000(2008)27[721:AOGDOT]2.0.CO;2     Document Type: Article

References (60)

1. Aljanabi, S. M. & I. Martinez. 1997. Universal and rapid salt-extraction of high quality genomic DNA for PCR- based techniques. Nucleic Acids Res. 25:4692-4693.
2. Arnaud, S., N. Galtier, M. Monteforte, F. Blanc & F. Bonhomme. 2000. Genetic structure and variability of protected populations of pearl oysters (Pinctada mazatlanica) from American Pacific coasts. Conserv. Gen. 1:299-308.
3. Astanei, J., E. Gosling, J. Wilson & E. Powell. 2005. Genetic variability and phylogeography of the invasive zebra mussel, Dreissena polymorpha (Pallas). Mol. Ecol. 14:1655-1666.
4. Belkhir, K., P. Borsa, L. Chikhi. N. Raufaste & F. Bonhomme. 2004. GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier (France). Available from http://www.genetix.univ-montp2.fr/genetix/genetix.htm.
5. Brown, B. L., D. E. Franklin, P. M. Gaffney, M. Hong, D. Dendantos & I. Kornfield. 2000. Characterization of microsatellites loci in the eastern oyster Crassostrea virginica. Mol. Ecol. 9:2217-2219.
6. Brookfield, I. F. Y. 1996. A simple new method for estimating null allele frequency from heterozygote deficiency. Mol. Ecol. 5:453-455.
7. Buroker, N. E. 1983. Population genetics of the American oyster Crassostrea virginica along the Atlantic coast and the Gulf of Mexico. Mar. Biol. 75:99-112.
8. Bouzat, J. L., H. H. Cheng & H. A. Lewin. 1998. Genetic evaluation of a demographic bottleneck in the Greater Prairie Chicken. Conserv. Biol. 12:823-843.
9. Carlsson, J. & K. S. Reece. 2007. Eight PCR primers to amplify EST-linked microsatellites in the Eastern oyster, Crassostrea virginica genome. Mol. Ecol. Notes 7:257-259.
10. Chapuis, M.-P. & A. Estoup. 2007. Microsatellite null alleles and estimation of population differentiation. Mol. Biol. Evol. 24:621-631.
11. Chakraborty, R., M. De Andrade, S. P. Daiger & B. Budowle. 1992. Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications. Ann. Human. GEN 56:45-57.
12. Contreras, F. & O. Castañeda. 1995. Los ecosistemas costeros del Estado de Veracruz. Gobierno del Edo. de Veracruz. SEDAP. Dir. Gral. de Pesca. México. 176 pp.
13. De Innocentis, S., L. Sola, S. Cataudella & P. Bentzen. 2001. Allozyme and microsatellite loci provide discordant estimates of population differentiation in the endangered dusky grouper (Epinephelus marginatus) within the Mediterranean Sea. Mol. Ecol. 10:2163-2175.
14. De la Rosa-Vélez, J. 1986. Variabilidad genética poblacional en ostiones de la especie Crassostrea virginica del Golfo de México. Doctoral thesis. Instituto de Ciencias del Mar y Limnología. Universidad Autónoma de México, México, D.F. 124 pp.
15. De la Rosa-Vélez, J. & F. Rodríguez-Romero. 1988. Aplicabilidad de las mediciones de variabilidad genética a la pesquería del ostión americano Crassostrea virginica (Gmelin) del Golfo de México. Cienc. Mar. 14:43-56.
16. Dhuyveter, E., E. Gaublomme & K. Desender. 2004. Genetic differentiation and local adaptation in the salt-marsh beetle Pogonus chalceus: a comparison between allozyme and microsatellite loci. Mol. Ecol. 13:1064-1074.
17. Fairbrother, J. F. & A. R. Beaumont. 1993. Heterozygote deficiencies in a cohort of newly settled Mytilus edulis spat. J. Mar. Biol. Ass. U.K. 73:647-653.
18. Gaffney, P. M. 1990. Enzyme heterozygosity, growth rate and viability in Mytilus edulis: another look. Evolution Int. J. Org. Evolution 44:204-210.
19. Gaffney, P. M. 1996. Biochemical and population genetics. In: V. S. Kennedy & R. I. E. Newell, editors. The eastern Oyster Crassostrea virginica. College Park, M. D: Maryland Sea Grant College. pp. 423-441.
20. Gilg, M. R. & T. J. Hilbish. 2003. The geography of marine larval dispersal: coupling genetics with fine-scale physical oceanography. Ecology 84:2989-2998.
21. Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http;//www.unil.ch/izea/ softwares/fstat.html. Updated from Goudet (1995).
22. Groue, K. J. & L. J. Lester. 1982. A morphological and genetic analysis of geographic variation among oysters in the Gulf of Mexico. Veliger 24:331-335.
23. Hare, M. P. & J. C. Avise. 1996. Molecular genetics analysis of a stepped multilocus cline in the American oyster (Crassostrea virginica). Evolution Int. J. Org. Evolution 50:2305-2315.
24. Hartl, D. L. & A. G. Clark. 1997. Principles of Population Genetics, Sinauer Associates, Sunderland, MA. 542 pp.
25. Hedgecock, D., G. Li, S. Hubert, K. Bucklin & V. Ribes. 2004. Widespread null alleles and poor cross-species amplification of microsatellite DNA loci cloned from the Pacific oyster, Crassostrea gigas. J. Shellfish Res. 23:379-385.
26. Hedrick, P. 2005. A standardized genetic differentiation measure. Evolution Int. J. Org. Evolution 59:1633-1638.
27. Hoover, C. A. & P. M. Gaffney. 2005. Geographical variation in nuclear genes of the eastern oyster, Crassostrea virginica Gmelin. J. Shellfish Res. 24:103-112.
28. Huvet, A., S. Lapègue, A. Magoulas & P. Boudry. 2000. Mitochondrial and nuclear DNA phylogeography of Crassostrea angulata, the Portuguese oyster endangered in Europe. Conserv. Genet. 1:251-262.
29. Jackson, J. B. C. 2001. What was natural in the coastal oceans? Proc. Natl. Acad. Sci. USA 98:5411-5418.
30. Jiménez, B. M. L., O. E. Vega & L. G. Castro. 2002. Tendencia de la pesquería de ostión a nivel nacional, regional y local. Primer Foro Regional sobre ostión de Tamaulipas, Veracruz y Tabasco. Tuxpan, Veracruz, 25 a 26 de abril. Instituto Nacional de la Pesca. México. pp. 1-8.
31. Johnson, M. S. & R. Black. 1982. Chaotic patchiness in an intertidal limpet, Siphonaria sp. Mar. Biol. 70:57-164.
32. Karl, S. A. & J. C. Avise. 1992. Balancing selection at allozyme loci in oysters: implications from nuclear RFLPs. Science 256:100-102.
33. Kenchington, E. L., M. U. Patwary, E. Zouros & C. J. Bird. 2006. Genetic differentiation in relation to marine landscape in broadcast-spawning bivalve mollusk (Placopeeten magellanicus). Mol. Ecol. 15:1781-1796.
34. Kennedy, V. S. 1996. Biology of larvae and Spat. In: V. S. Kennedy, R. I. E. Newell, editors. The eastern oyster Crassostrea virginica. Maryland Sea Grant College, College Park, MD. pp. 371-421.
35. King, T. L., R. Ward & E. G. Zimmerman. 1994. Population structure of eastern oyster (Crassostrea virginica) inhabiting the Laguna Madre, Texas, and adjacent bay systems. Can. J. Fish. Aquat. Sci. 51(Suppl. 1):215-222.
36. Launey, S., C. Ledu, P. Boudry, F. Bonhomme & Y. Naciri-Graven. 2002. Geographic structure in the European flat oyster (Ostrea edulis) as revealed by microsatellite polymorphism. J. Hered. 93:331-337.
37. Larson, R. J. & R. M. Julian. 1999. Spatial and temporal genetic patchiness in marine populations and their implications for fisheries management. CalCOFI 40:94-99.
38. McDonald, J. H., C. Verrelli & L. B. Geyer. 1996. Lack of geographic variation in anonymous nuclear polymorphisms in the American oyster, Crassostrea virginica. Mol. Biol. Evol. 13:1114-1118.
39. McGoldrick, D. J., D. Hedgecock, L. English, P. Baoprasertkul & R. D. Ward. 2000. The transmission of microsatellite alleles in Australian and north American stocks of the Pacific oyster (Crassostrea gigas): selection and null alleles. J. Shellfish Res. 19:779-788.
40. Naciri, Y., Y. Vigouroux, J. Dallas, E. Desmarais, C. Delsert & F. Bonhomme. 1995. Identification and inheritance of (GA/TC)n and (AC/GT)n repeats in the European flat oyster Ostrea edulis (L.). Mol. Biol. Biotechnol. 4:83-87.
41. Newkirk, G. F., L. E. Haley, D. L. Wangh & R. Doyle. 1977. Genetics of larvae and spat growth rate in the oyster Crassostrea virginica. Mar. Biol. 41:49-52.
42. Palacios-Fest, M. & C. Vargas-Rangel. 1998. Pesquería de Ostión. In: P. Guzmán-Amaya, C. Quiroga-Brahms, C. Díaz-Luna, D. Fuentes-Castellanos, C. M. Contreras & G. Silva-López, editors La Pesca en Veracruz y sus perspectivas de desarrollo. SAGARPA-INP, Xalapa, Ver, Mexico. pp. 235-241.
43. Pérez-Enríquez, R., M. Takemura, K. Tabata & N. Taniguchi. 2001. Genetic diversity of red sea bream Pagrus major in western Japan in relation to stock enhancement. Fish. Sci. 67:71-78.
44. Raymond, M. & F. Rousset. 1995. GENEPOP (version 3.3): population genetics for exact test ecumenism. J. Hered. 86:248-249.
45. Reeb, C. A. & J. C. Avise. 1990. A genetic discontinuity in a continuously distributed species: mitochondrial DNA in the American oyster, Crassostrea virginica. Genetics 124:397-406.
46. Rice, W. R. 1989. Analyzing tables of statistical tests. Evolution Int. J. Org. Evolution 41:223-235.
47. Reece, K. S., W. L. Ribeiro, P. M. Gaffney, R. B. Carnegie & S. K. Allen, Jr. 2004. Microsatellite marker development and analysis in the eastern oyster (Crassostrea virginica): confirmation of null alleles and non-mendelian segregation ratios. J. Hered. 95:346-352.
48. Robles-Hernández, R. 2006. Biología de la reproducción del ostión Americano Crassostrea virginica en Veracruz, Mexico; en condiciones naturales y de laboratorio. Tesis Doctoral, Université de Bretagne Occidentale, Brest, France. 158 pp
49. Rose, C. G., T. P. Paynter & M. P. Hare. 2006. Isolation by distance in the eastern oyster, Crassostrea virginica, in Chesapeake Bay. J. Hered. 97:158-170.
50. Rousset, F. 1997. Genetic differentiation and estimation of gene flow from F-statistic under isolation by distance. Genetics 145:1219-1228.
51. Sackett, R. E. 2002. Characterization of North Carolina Crassostrea virginica population structure based on mtDNA haplotype variation. M.S. Thesis, University of North Carolina at Wilmington. 57 pp.
52. SAGARPA. 2002. Anuario estadístico de pesca 2001. Secretaría de Agricultura, Ganadería, Desarrollo Rural, Pesca y Alimentación, Mexico, D.F. Available from: http://www.conapesca.sagarpa. gob.mx/wb/cona/cona_2002_
53. Scott, G. I. & D. R. Lawrence. 1982. The American oyster as a coastal zone pollution monitor: a pilot study. Estuaries 5:40-46.
54. Spencer, C. C., J. E. Neigel & P. L. Leberg. 2000. Experimental evaluation of the usefulness of microsatellite DNA for detecting demographic bottlenecks. Mol. Ecol. 9:1517-1528.
55. Van Oosterhout, C., W. F. Hutchinson, D. P. M. Wills & P. Shipley. 2004. Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4:535-538.
56. Vadopalas, B., L. L. Leclair & P. Bentzen. 2004. Microsatellite and allozyme analyses reveal few genetic differences among spatially distinct aggregations of geoduck clams (Panopea abrupta, Conrad 1849). J. Shellfish Res. 23:693-706.
57. Wakefield, J. R. & P. M. Gaffney. 1996. DGGE reveals additional population structure in American oyster (Crassostrea virginica) populations. J. Shellfish Res. 15:513.
58. Weir, B. S. & C. C. Cockerham. 1984. Estimating F statistics for the analysis of population structure. Evolution Int. J. Org. Evolution 38:1358-1370.
59. Zavala-Hidalgo, J., S. L. Morey & J. O'Brien. 2003. Seasonal circulation on the western shelf of the Gulf of Mexico using a high-resolution numerical model. J. Geophys. Res. 108:3389.
60. Zouros, E. & D. W. Foltz. 1984. Possible explanations of heterozygote deficiency in bivalve mollusks. Malacologia 25:583-591.