An image warping technique for rodent brain MRI-histology registration based on thin-plate splines with landmark optimization

Progress in Biomedical Optics and Imaging - Proceedings of SPIE

Volumn 7259, Issue , 2009, Pages

  Liu, Yutong ^a   Uberti, Mariano ^a   Dou, Huanyu ^a,b   Mosley, R Lee ^a,b   Gendelman, Howard E ^a,b   Boska, Michael D ^a  

^a UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

^b UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

Author keywords

Brain; Histology; Image registration; Image warping; Landmark optimization; Magnetic resonance imaging; MRI; Nonlinear registration; Rodent; Thin plate splines

Indexed keywords

HISTOLOGY IMAGES; IMAGE WARPING; MRI; NONLINEAR REGISTRATION; THIN PLATE SPLINE;

BIOLOGICAL RADIATION EFFECTS; BIOMARKERS; CURVE FITTING; HISTOLOGY; IMAGE REGISTRATION; IMAGING SYSTEMS; MAGNETIC RESONANCE; MAGNETIC RESONANCE IMAGING; OPTIMIZATION; PIXELS; PORE PRESSURE; SIMULATORS; SPLINES; WEAVING;

MEDICAL IMAGING;

EID: 71649087440     PISSN: 16057422     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.812045     Document Type: Conference Paper

References (17)

1. Persidsky, Y., Potula, R., and Haorah, J., "Rodent model systems for studies of HIV-1 associated dementia," Neurotox Res, 8, 91-106 (2005).
2. Przedborski, S., and Vila, M., "The 1-methyl-4-phenyl-1,2,3,6- tetrahydropyridine mouse model: a tool to explore the pathogenesis of Parkinson's disease," Ann N Y Acad Sci, 991, 189-98 (2003).
3. Ebadi, M., Brown-Borg, H., El Refaey, H., Singh, B. B., Garrett, S., Shavali, S., and Sharma, S. K., "Metallothionein-mediated neuroprotection in genetically engineered mouse models of Parkinson's disease," Brain Res Mol Brain Res, 134, 67-75 (2005).
4. Emilien, G., Maloteaux, J. M., Beyreuther, K., and Masters, C. L., "Alzheimer disease: mouse models pave the way for therapeutic opportunities," Arch Neurol, 57, 176-81 (2000).
5. Julien, J. P., and Kriz, J., "Transgenic mouse models of amyotrophic lateral sclerosis," Biochim Biophys Acta, 1762, 1013-24 (2006).
6. Jacobs, M. A., Windham, J. P., Soltanian-Zadeh, H., Peck, D. J., and Knight, R. A., "Registration and warping of magnetic resonance images to histological sections," Med Phys, 26, 1568-78 (1999).
7. Meyer, C. R., Moffat, B. A., Kuszpit, K. K., Bland, P. L., McKeever, P. E., Johnson, T. D., Chenevert, T. L., Rehemtulla, A., and Ross, B. D., "A methodology for registration of a histological slide and in vivo MRI volume based on optimizing mutual information," Mol Imaging, 5, 16-23 (2006).
8. Fitzpatrick, J. M., Hill, D. L. G., and Maurer, C. R., Jr., "Image Registration," in Handbook of Medical Imaging, 2, M. Sonka and J. Michael Fitzpatrick, Eds.: SPIE Press, 447513 (2004).
9. Liu, Y., D'Arceuil, H., He, J., Duggan, M., Gonzalez, G., Pryor, J., and de Crespigny, A., "A nonlinear meshwarping technique for correcting brain deformation after stroke," Magn Reson Imaging, 24, 1069-75 (2006).
10. Bookstein, F. L., "Principal warps: thin-plate splines and the decomposition of deformations," IEEE Trans. Pattern. Anal. Mach. Intell., 11, 567-585 (1989).
11. Bookstein, F. L., "Four metrics for image variation," Prog Clin Biol Res, 363, 227-40 (1991).
12. Meyer, C. R., Boes, J. L., Kim, B., Bland, P. H., Zasadny, K. R., Kison, P. V., Koral, K., Frey, K. A., and Wahl, R. L., "Demonstration of accuracy and clinical versatility of mutual information for automatic multimodality image fusion using affine and thin-plate spline warped geometric deformations," Med Image Anal, 1, 195-206 (1997).
13. Rohr, K., "Landmark-Based Image Analysis: Using Geometric and Intensity Models," in [Computational Imaging and Vision Series], 21, Dordrecht: Kluwer Academic Publishers (2001).
14. Rohr, K., Stiehl, H. S., Sprengel, R., Beil, W., Buzug, T. M., Weese, J., and Kuhn, M. H., "Nonrigid registration of medical images based on anatomical point landmarks and approximating thin-plate splines," Proceedings of the Aacheren Workshop: Bildverarbeiterung fur die Medizin, Aachen, Germany (1996).
15. Rohr, K., Stiehl, H. S., Sprengel, R., Buzug, T. M., Weese, J., and Kuhn, M. H., "Landmark-based elastic registration using approximating thin-plate splines," IEEE Trans Med Imaging, 20, 526-34 (2001).
16. Lagarias, J. C., Reeds, J. A., Wright, M. H., and Wright, P. E., "Convergence Properties of the Nelder-Mead Simplex Method in Low Dimensions," SIAM Journal of Optimization, 9, 112-47 (1998).
17. Liu, Y., Uberti, M. G., Dou, H., Banerjee, R., Grotepas, C. B., Stone, D. K., Rabinow, B. E., Gendelman, H. E., and Boska, M. D., "Ingress of blood-borne macrophages across the blood-brain barrier in murine HIV-1 encephalitis," J Neuroimmunol, 200, 41-52 (2008).