-
1
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
10.1101/gr.078212.108, 2577856, 18714091
-
Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18:1851-1858. 10.1101/gr.078212.108, 2577856, 18714091.
-
(2008)
Genome Res
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
2
-
-
40049104732
-
SOAP: short oligonucleotide alignment program
-
10.1093/bioinformatics/btn025, 18227114
-
Li RQ, Li YR, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24(5):713-714. 10.1093/bioinformatics/btn025, 18227114.
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 713-714
-
-
Li, R.Q.1
Li, Y.R.2
Kristiansen, K.3
Wang, J.4
-
3
-
-
53749083993
-
SeqMap: mapping massive amount of oligonucleotides to the genome
-
10.1093/bioinformatics/btn429, 2562015, 18697769
-
Jiang H, Wong WH. SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics 2008, 24(20):2395-2396. 10.1093/bioinformatics/btn429, 2562015, 18697769.
-
(2008)
Bioinformatics
, vol.24
, Issue.20
, pp. 2395-2396
-
-
Jiang, H.1
Wong, W.H.2
-
4
-
-
67049159825
-
SHRiMP: accurate mapping of short color-space reads
-
10.1371/journal.pcbi.1000386, 2678294, 19461883
-
Rumble SM, Lacroute P, Dalca AV, Fiume M, Sidow A, Brudno M. SHRiMP: accurate mapping of short color-space reads. PLOS Comput Biol 2009, 5(5):e1000386. 10.1371/journal.pcbi.1000386, 2678294, 19461883.
-
(2009)
PLOS Comput Biol
, vol.5
, Issue.5
-
-
Rumble, S.M.1
Lacroute, P.2
Dalca, A.V.3
Fiume, M.4
Sidow, A.5
Brudno, M.6
-
5
-
-
0036226603
-
BLAT-The BLAST-like alignment tool
-
187518, 11932250
-
Kent WJ. BLAT-The BLAST-like alignment tool. Genome Res 2002, 12:656-664. 187518, 11932250.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
6
-
-
18744383071
-
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-
10.1093/bioinformatics/bti310, 15728110
-
Wu TD, Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005, 21(9):1859-1875. 10.1093/bioinformatics/bti310, 15728110.
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
7
-
-
49549102475
-
Optimal spliced alignments of short sequence reads
-
10.1093/bioinformatics/btn300, 18689821
-
Bona FD, Ossowski S, Schneeberger K, Ratsch G. Optimal spliced alignments of short sequence reads. Bioinformatics 2008, 24(16):i174-i180. 10.1093/bioinformatics/btn300, 18689821.
-
(2008)
Bioinformatics
, vol.24
, Issue.16
-
-
Bona, F.D.1
Ossowski, S.2
Schneeberger, K.3
Ratsch, G.4
-
8
-
-
84871636708
-
MapNext homepage
-
MapNext homepage. , http://evolution.sysu.edu.cn/english/software/mapnext.htm
-
-
-
-
10
-
-
0034727107
-
An SNP map of the human genome generated by reduced representation shotgun sequencing
-
10.1038/35035083, 11029002
-
Altshuler D, Pollara VJ, Cowles CR, Van Etten WJ, Baldwin J, Linton L, Lander ES. An SNP map of the human genome generated by reduced representation shotgun sequencing. Nature 2000, 407:513-516. 10.1038/35035083, 11029002.
-
(2000)
Nature
, vol.407
, pp. 513-516
-
-
Altshuler, D.1
Pollara, V.J.2
Cowles, C.R.3
Van Etten, W.J.4
Baldwin, J.5
Linton, L.6
Lander, E.S.7
-
11
-
-
43149107930
-
Quality scores and SNP detection in sequencing-by-synthesis systems
-
10.1101/gr.070227.107, 2336812, 18212088
-
Brockman W, Alvarez P, Young S, Garber M, Giannoukos G, Lee WL, Russ C, Lander ES, Nusbaum C, Jaffe DB. Quality scores and SNP detection in sequencing-by-synthesis systems. Genome Res 2008, 18:763-770. 10.1101/gr.070227.107, 2336812, 18212088.
-
(2008)
Genome Res
, vol.18
, pp. 763-770
-
-
Brockman, W.1
Alvarez, P.2
Young, S.3
Garber, M.4
Giannoukos, G.5
Lee, W.L.6
Russ, C.7
Lander, E.S.8
Nusbaum, C.9
Jaffe, D.B.10
-
12
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model
-
10.1093/bioinformatics/18.2.337, 11847089
-
Hudson RR. Generating samples under a Wright-Fisher neutral model. Bioinformatics 2002, 18:337-8. 10.1093/bioinformatics/18.2.337, 11847089.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
13
-
-
0030928378
-
Seq-gen: An application for the monte carlo simulation of dna sequence evolution along phylogenetic trees
-
Rambaut A, Grassly NC. Seq-gen: An application for the monte carlo simulation of dna sequence evolution along phylogenetic trees. Comput Appl Biosci 1997, 13:235-238.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.C.2
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