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Volumn 10, Issue SUPPL. 3, 2009, Pages

MapNext: A software tool for spliced and unspliced alignments and SNP detection of short sequence reads

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; AUTOMATION; COMPUTER PROGRAM; CONTROLLED STUDY; DNA SEQUENCE; GENE CLUSTER; GENE FREQUENCY; GENETIC ALGORITHM; GENETIC TRANSCRIPTION; INTRON; NONHUMAN; PLANT GENETICS; SEQUENCE ALIGNMENT; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; ALLELE; METHODOLOGY; RNA SPLICING;

EID: 71549165130     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-S3-S13     Document Type: Article
Times cited : (12)

References (13)
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  • 2
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    • SOAP: short oligonucleotide alignment program
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    • Li RQ, Li YR, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008, 24(5):713-714. 10.1093/bioinformatics/btn025, 18227114.
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    • Li, R.Q.1    Li, Y.R.2    Kristiansen, K.3    Wang, J.4
  • 3
    • 53749083993 scopus 로고    scopus 로고
    • SeqMap: mapping massive amount of oligonucleotides to the genome
    • 10.1093/bioinformatics/btn429, 2562015, 18697769
    • Jiang H, Wong WH. SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics 2008, 24(20):2395-2396. 10.1093/bioinformatics/btn429, 2562015, 18697769.
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    • Jiang, H.1    Wong, W.H.2
  • 4
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    • SHRiMP: accurate mapping of short color-space reads
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    • (2009) PLOS Comput Biol , vol.5 , Issue.5
    • Rumble, S.M.1    Lacroute, P.2    Dalca, A.V.3    Fiume, M.4    Sidow, A.5    Brudno, M.6
  • 5
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-The BLAST-like alignment tool
    • 187518, 11932250
    • Kent WJ. BLAT-The BLAST-like alignment tool. Genome Res 2002, 12:656-664. 187518, 11932250.
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    • Kent, W.J.1
  • 6
    • 18744383071 scopus 로고    scopus 로고
    • GMAP: a genomic mapping and alignment program for mRNA and EST sequences
    • 10.1093/bioinformatics/bti310, 15728110
    • Wu TD, Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005, 21(9):1859-1875. 10.1093/bioinformatics/bti310, 15728110.
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    • Wu, T.D.1    Watanabe, C.K.2
  • 7
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    • Optimal spliced alignments of short sequence reads
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    • (2008) Bioinformatics , vol.24 , Issue.16
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  • 8
    • 84871636708 scopus 로고    scopus 로고
    • MapNext homepage
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  • 10
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    • An SNP map of the human genome generated by reduced representation shotgun sequencing
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  • 13
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    • Rambaut, A.1    Grassly, N.C.2


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