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Volumn 19, Issue 11, 2009, Pages 1281-1287

Distribution patterns of the members of phylum Acidobacteria in global soil samples

Author keywords

Acidobacteria; Distribution; PCR; T RFLP

Indexed keywords

DNA 16S;

EID: 71549160060     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: 10.4014/jmb.0904.04017     Document Type: Article
Times cited : (17)

References (41)
  • 1
    • 0032963409 scopus 로고    scopus 로고
    • Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment
    • Barns, S. M., S. L. Takala, and C. R. Kuske. 1999. Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl. Environ. Microbiol. 65: 1731-1737.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1731-1737
    • Barns, S.M.1    Takala, S.L.2    Kuske, C.R.3
  • 2
    • 34547568706 scopus 로고    scopus 로고
    • Candidatus Chloracidobacterium thermophilum: An aerobic phototrophic Acidobacterium
    • Bryant, D. A., A. M. Costas, J. A. Maresca, A. G. Chew, C. G. Klatt, M. M. Bateson, et al. 2007. Candidatus Chloracidobacterium thermophilum: An aerobic phototrophic Acidobacterium. Science 317: 523-526.
    • (2007) Science , vol.317 , pp. 523-526
    • Bryant, D.A.1    Costas, A.M.2    Maresca, J.A.3    Chew, A.G.4    Klatt, C.G.5    Bateson, M.M.6
  • 3
    • 0034467820 scopus 로고    scopus 로고
    • Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil
    • Cho, J. C. and J. M. Tiedje. 2000. Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl. Environ. Microbiol. 66: 5448-5456.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5448-5456
    • Cho, J.C.1    Tiedje, J.M.2
  • 4
    • 0032733240 scopus 로고    scopus 로고
    • Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer
    • Coates, J. D., D. J. Ellis, C. V. Gaw, and D. R. Lovley. 1999. Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. Int. J. Syst. Bacteriol. 49 Pt 4: 1615-1622.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , Issue.PART 4 , pp. 1615-1622
    • Coates, J.D.1    Ellis, D.J.2    Gaw, C.V.3    Lovley, D.R.4
  • 6
    • 13544277388 scopus 로고    scopus 로고
    • Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria
    • Davis, K. E., S. J. Joseph, and P. H. Janssen. 2005. Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria. Appl. Environ. Microbiol. 71: 826-834.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 826-834
    • Davis, K.E.1    Joseph, S.J.2    Janssen, P.H.3
  • 7
    • 0032914126 scopus 로고    scopus 로고
    • Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
    • Dunbar, J., S. Takala, S. M. Barns, J. A. Davis, and C. R. Kuske. 1999. Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl. Environ. Microbiol. 65: 1662-1669.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1662-1669
    • Dunbar, J.1    Takala, S.2    Barns, S.M.3    Davis, J.A.4    Kuske, C.R.5
  • 8
    • 34247606048 scopus 로고    scopus 로고
    • Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria
    • Eichorst, S. A., J. A. Breznak, and T. M. Schmidt. 2007. Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl. Environ. Microbiol. 73: 2708-2717.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 2708-2717
    • Eichorst, S.A.1    Breznak, J.A.2    Schmidt, T.M.3
  • 9
    • 0043031094 scopus 로고    scopus 로고
    • Fidelity of select restriction endonucleases in determining microbial diversity by terminal-restriction fragment length polymorphism
    • Engebretson, J. J. and C. L. Moyer. 2003. Fidelity of select restriction endonucleases in determining microbial diversity by terminal-restriction fragment length polymorphism. Appl. Environ. Microbiol. 69: 4823-4829.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4823-4829
    • Engebretson, J.J.1    Moyer, C.L.2
  • 10
    • 55849095838 scopus 로고    scopus 로고
    • Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'
    • Fukunaga, Y., M. Kurahashi, K. Yanagi, A. Yokota, and S. Harayama. 2008. Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'. Int. J. Syst. Evol. Microbiol. 58: 2597-2601.
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 2597-2601
    • Fukunaga, Y.1    Kurahashi, M.2    Yanagi, K.3    Yokota, A.4    Harayama, S.5
  • 11
    • 0031804722 scopus 로고    scopus 로고
    • High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria
    • Fulthorpe, R. R., A. N. Rhodes, and J. M. Tiedje. 1998. High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria. Appl. Environ. Microbiol. 64: 1620-1627.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1620-1627
    • Fulthorpe, R.R.1    Rhodes, A.N.2    Tiedje, J.M.3
  • 14
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall, T. A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41: 95-98.
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 15
    • 0141938368 scopus 로고    scopus 로고
    • Novel acidophiles isolated from moderately acidic mine drainage waters
    • Hallberg, K. B. and D. B. Johnson. 2003. Novel acidophiles isolated from moderately acidic mine drainage waters. Hydrometallurgy 71: 139-148.
    • (2003) Hydrometallurgy , vol.71 , pp. 139-148
    • Hallberg, K.B.1    Johnson, D.B.2
  • 16
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., B. M. Goebel, and N. R. Pace. 1998. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180: 4765-4774. (Pubitemid 28429361)
    • (1998) Journal of Bacteriology , vol.180 , Issue.18 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 17
    • 33644952722 scopus 로고    scopus 로고
    • Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
    • Janssen, P. H. 2006. Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl. Environ. Microbiol. 72: 1719-1728.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1719-1728
    • Janssen, P.H.1
  • 18
    • 0036250036 scopus 로고    scopus 로고
    • Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria. Proteobacteria, and Verrucomicrobia
    • Janssen, P. H., P. S. Yates, B. E. Grinton, P. M. Taylor, and M. Sait. 2002. Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria. Proteobacteria, and Verrucomicrobia. Appl. Environ. Microbiol. 68: 2391-2396.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2391-2396
    • Janssen, P.H.1    Yates, P.S.2    Grinton, B.E.3    Taylor, P.M.4    Sait, M.5
  • 20
    • 0035319323 scopus 로고    scopus 로고
    • 16S Ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM
    • Kaplan, C. W., J. C. Astaire, M. E. Sanders, B. S. Reddy, and C. L. Kitts. 2001. 16S Ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 67: 1935-1939.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1935-1939
    • Kaplan, C.W.1    Astaire, J.C.2    Sanders, M.E.3    Reddy, B.S.4    Kitts, C.L.5
  • 21
    • 0037728487 scopus 로고    scopus 로고
    • Variation between observed and true terminal restriction fragment length is dependent on true TRF length and purine content
    • Kaplan, C. W. and C. L. Kitts. 2003. Variation between observed and true terminal restriction fragment length is dependent on true TRF length and purine content. J. Microbiol. Methods 54: 121-125.
    • (2003) J. Microbiol. Methods , vol.54 , pp. 121-125
    • Kaplan, C.W.1    Kitts, C.L.2
  • 22
    • 0023478387 scopus 로고
    • Acidophilic heterotrophic bacteria isolated from acidic mine drainage, sewage, and soils
    • Kishimoto, N. and T. Tano. 1987. Acidophilic heterotrophic bacteria isolated from acidic mine drainage, sewage, and soils. J. Gen. Appl. Microbiol. 33: 11-25.
    • (1987) J. Gen. Appl. Microbiol. , vol.33 , pp. 11-25
    • Kishimoto, N.1    Tano, T.2
  • 23
    • 0035040382 scopus 로고    scopus 로고
    • Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics
    • Kitts, C. L. 2001. Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics. Curr. Issues Intest. Microbiol. 2: 17-25.
    • (2001) Curr. Issues Intest. Microbiol. , vol.2 , pp. 17-25
    • Kitts, C.L.1
  • 24
    • 47049112538 scopus 로고    scopus 로고
    • Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils
    • Koch, I. H., F. Gich, P. F. Dunfield, and J. Overmann. 2008. Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils. Int. J. Syst. Evol. Microbiol. 58: 1114-1122.
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 1114-1122
    • Koch, I.H.1    Gich, F.2    Dunfield, P.F.3    Overmann, J.4
  • 25
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske, C. R., S. M. Barns, and J. D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63: 3614-3621.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 26
    • 0033831538 scopus 로고    scopus 로고
    • Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater
    • LaPara, T. M., C. H. Nakatsu, L. Pantea, and J. E. Alleman. 2000. Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater. Appl. Environ. Microbiol. 66: 3951-3959.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3951-3959
    • LaPara, T.M.1    Nakatsu, C.H.2    Pantea, L.3    Alleman, J.E.4
  • 27
    • 0034054086 scopus 로고    scopus 로고
    • Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis
    • Layton, A. C., P. N. Karanth, C. A. Lajoie, A. J. Meyers, I. R. Gregory, R. D. Stapleton, D. E. Taylor, and G. S. Sayler. 2000. Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis. Appl. Environ. Microbiol. 66: 1167-1174.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1167-1174
    • Layton, A.C.1    Karanth, P.N.2    Lajoie, C.A.3    Meyers, A.J.4    Gregory, I.R.5    Stapleton, R.D.6    Taylor, D.E.7    Sayler, G.S.8
  • 28
    • 47349088053 scopus 로고    scopus 로고
    • Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil
    • Lee, S. H., J. O. Ka, and J. C. Cho. 2008. Members of the phylum Acidobacteria are dominant and metabolically active in rhizosphere soil. FEMS Microbiol. Lett. 285: 263-269.
    • (2008) FEMS Microbiol. Lett. , vol.285 , pp. 263-269
    • Lee, S.H.1    Ka, J.O.2    Cho, J.C.3
  • 29
    • 0027937278 scopus 로고
    • Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds
    • Liesack, W., F. Bak, J. U. Kreft, and E. Stackebrandt. 1994. Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds. Arch. Microbiol. 162: 85-90.
    • (1994) Arch. Microbiol. , vol.162 , pp. 85-90
    • Liesack, W.1    Bak, F.2    Kreft, J.U.3    Stackebrandt, E.4
  • 30
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu, W. T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63: 4516-4522.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 31
    • 0030763934 scopus 로고    scopus 로고
    • Detection and in situ identification of representatives of a widely distributed new bacterial phylum
    • Ludwig, W., S. H. Bauer, M. Bauer, I. Held, G. Kirchhof, R. Schulze, et al. 1997. Detection and in situ identification of representatives of a widely distributed new bacterial phylum. FEMS Microbiol. Lett. 153: 181-190.
    • (1997) FEMS Microbiol. Lett. , vol.153 , pp. 181-190
    • Ludwig, W.1    Bauer, S.H.2    Bauer, M.3    Held, I.4    Kirchhof, G.5    Schulze, R.6
  • 32
    • 0034000146 scopus 로고    scopus 로고
    • A novel multiresistant Streptococcus pneumoniae serogroup 19 clone from Washington State identified by pulsed-field gel electrophoresis and restriction fragment length patterns
    • Luna, V. A., D. B. Jernigan, A. Tice, J. D. Kellner, and M. C. Roberts. 2000. A novel multiresistant Streptococcus pneumoniae serogroup 19 clone from Washington State identified by pulsed-field gel electrophoresis and restriction fragment length patterns. J. Clin. Microbiol. 38: 1575-1580.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 1575-1580
    • Luna, V.A.1    Jernigan, D.B.2    Tice, A.3    Kellner, J.D.4    Roberts, M.C.5
  • 33
    • 0033152351 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism (T-RFLP): An emerging method for characterizing diversity among homologous populations of amplification products
    • Marsh, T. L. 1999. Terminal restriction fragment length polymorphism (T-RFLP): An emerging method for characterizing diversity among homologous populations of amplification products. Curr. Opin. Microbiol. 2: 323-327.
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 323-327
    • Marsh, T.L.1
  • 34
    • 0001823647 scopus 로고
    • Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal RNA gene sequences and restriction endonuclease analysis (ARDRA)
    • A. D. L. Akkermans, et al. (eds.) Kluwer Academic Publisher, Dordrecht, The Netherlands
    • Massol-Deya, A. A., D. A. Odelson, R. F. Hickey, and J. M. Tiedje. 1995. Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal RNA gene sequences and restriction endonuclease analysis (ARDRA), pp. 1-8. In A. D. L. Akkermans, et al. (eds.). Molecular Microbial Ecology Manual. Kluwer Academic Publisher, Dordrecht, The Netherlands.
    • (1995) Molecular Microbial Ecology Manual , pp. 1-8
    • Massol-Deya, A.A.1    Odelson, D.A.2    Hickey, R.F.3    Tiedje, J.M.4
  • 36
    • 33144484401 scopus 로고    scopus 로고
    • Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts
    • Penn, K., D. Wu, J. A. Eisen, and N. Ward. 2006. Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts. Appl. Environ. Microbiol. 72: 1680-1683.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1680-1683
    • Penn, K.1    Wu, D.2    Eisen, J.A.3    Ward, N.4
  • 37
    • 33644962444 scopus 로고    scopus 로고
    • Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil
    • Sait, M., K. E. Davis, and P. H. Janssen. 2006. Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil. Appl. Environ. Microbiol. 72: 1852-1857.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1852-1857
    • Sait, M.1    Davis, K.E.2    Janssen, P.H.3
  • 38
    • 18744382447 scopus 로고    scopus 로고
    • Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys
    • Sait, M., P. Hugenholtz, and P. H. Janssen. 2002. Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ. Microbiol. 4: 654-666.
    • (2002) Environ. Microbiol. , vol.4 , pp. 654-666
    • Sait, M.1    Hugenholtz, P.2    Janssen, P.H.3
  • 39
    • 0033931987 scopus 로고    scopus 로고
    • Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece)
    • Sievert, S. M., J. Kuever, and G. Muyzer. 2000. Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece). Appl. Environ. Microbiol. 66: 3102-3109.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3102-3109
    • Sievert, S.M.1    Kuever, J.2    Muyzer, G.3
  • 41
    • 27144525864 scopus 로고    scopus 로고
    • Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira Cave using 23S rRNA sequence analyses
    • DOI 10.1080/01490450500248986
    • Zimmermann, J., J. M. Gonzalez, C. Saiz-Jimenez, and W. Ludwig. 2005. Detection and phylogenetic relationships of highly diverse uncultured acidobacterial communities in Altamira Cave using 23S rRNA sequence analysis. Geomicrobiol. J. 22: 379-388. (Pubitemid 41490096)
    • (2005) Geomicrobiology Journal , vol.22 , Issue.7-8 , pp. 379-388
    • Zimmermann, J.1    Gonzalez, J.M.2    Saiz-Jimenez, C.3    Ludwig, W.4


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