-
1
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc National Academy of Sciences USA 1998, 95(25):14863-14868.
-
(1998)
Proc National Academy of Sciences USA
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
2
-
-
0345580221
-
Large-scale clustering of cDNA-fingerprinting data
-
10.1101/gr.9.11.1093, 310829, 10568749
-
Herwig R, Poustka AJ, Müller C, Bull C, Lehrach H, O'Brien J. Large-scale clustering of cDNA-fingerprinting data. Genome Research 1999, 9(11):1093-1105. 10.1101/gr.9.11.1093, 310829, 10568749.
-
(1999)
Genome Research
, vol.9
, Issue.11
, pp. 1093-1105
-
-
Herwig, R.1
Poustka, A.J.2
Müller, C.3
Bull, C.4
Lehrach, H.5
O'Brien, J.6
-
3
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo P, Slonim D, Mesirov J, Zhu Q, Kitareewan S, Dmitrovsky E, Lander ES, Golub TR. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc National Academy of Sciences USA 1999, 96(6):2907-2912.
-
(1999)
Proc National Academy of Sciences USA
, vol.96
, Issue.6
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
4
-
-
33750021210
-
Evaluation and comparison of gene clustering methods in microarray analysis
-
10.1093/bioinformatics/btl406, 16882653
-
Thalamuthu A, Mukhopadhyay I, Zheng X, Tseng GC. Evaluation and comparison of gene clustering methods in microarray analysis. Bioinformatics 2006, 22(19):2405-2412. 10.1093/bioinformatics/btl406, 16882653.
-
(2006)
Bioinformatics
, vol.22
, Issue.19
, pp. 2405-2412
-
-
Thalamuthu, A.1
Mukhopadhyay, I.2
Zheng, X.3
Tseng, G.C.4
-
5
-
-
3142756502
-
Open source clustering software
-
10.1093/bioinformatics/bth078, 14871861
-
de Hoon MJL, Imoto S, Nolan J, Miyano S. Open source clustering software. Bioinformatics 2004, 20(9):1453-1454. 10.1093/bioinformatics/bth078, 14871861.
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1453-1454
-
-
de Hoon, M.J.L.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
6
-
-
71549119579
-
-
R
-
R. , http://www.r-project.org/
-
-
-
-
7
-
-
33846064113
-
NCBI GEO: mining tens of millions of expression profiles-database and tools update
-
10.1093/nar/gkl887, 1669752, 17099226
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R. NCBI GEO: mining tens of millions of expression profiles-database and tools update. Nucleic Acids Research 2007, 35:D760-D765. 10.1093/nar/gkl887, 1669752, 17099226., http://www.ncbi.nlm.nih.gov/geo/
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Edgar, R.10
-
8
-
-
71549136574
-
HAMSTER and HAMSTER+
-
HAMSTER and HAMSTER+. , http://hamster.cbrc.jp/
-
-
-
-
9
-
-
84911584312
-
Shortest connection networks and some generalizations
-
Prim RC. Shortest connection networks and some generalizations. Bell System Technical Journal 1957, 36:1389-1401.
-
(1957)
Bell System Technical Journal
, vol.36
, pp. 1389-1401
-
-
Prim, R.C.1
-
10
-
-
70350674995
-
On the shortest spanning subtree of a graph and the traveling salesman problem
-
Kruskal JB. On the shortest spanning subtree of a graph and the traveling salesman problem. American Mathematical Society 1956, 7:48-50.
-
(1956)
American Mathematical Society
, vol.7
, pp. 48-50
-
-
Kruskal, J.B.1
-
11
-
-
0004116989
-
-
Cambridge, USA: The MIT Press, third
-
Cormen TH, Leiserson CE, Rivest RL, Stein C. Introduction to Algorithms 2009, Cambridge, USA: The MIT Press, third.
-
(2009)
Introduction to Algorithms
-
-
Cormen, T.H.1
Leiserson, C.E.2
Rivest, R.L.3
Stein, C.4
-
13
-
-
34547192238
-
Density-equalizing Euclidean minimum spanning trees for the detection of all disease cluster shapes
-
Wieland SC, Brownstein JS, Berger B, Mandl KD. Density-equalizing Euclidean minimum spanning trees for the detection of all disease cluster shapes. Proc National Academy of Sciences USA 2007, 104(22):9404-9409.
-
(2007)
Proc National Academy of Sciences USA
, vol.104
, Issue.22
, pp. 9404-9409
-
-
Wieland, S.C.1
Brownstein, J.S.2
Berger, B.3
Mandl, K.D.4
-
14
-
-
0032284326
-
Fast hierarchical clustering and other applications of dynamic closest pairs
-
Eppstein D. Fast hierarchical clustering and other applications of dynamic closest pairs. Proc 9th ACM-SIAM Symposium on Discrete Algorithms 1998, 619-628.
-
(1998)
Proc 9th ACM-SIAM Symposium on Discrete Algorithms
, pp. 619-628
-
-
Eppstein, D.1
-
16
-
-
0035999974
-
Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning trees
-
Xu Y, Olman V, Xu D. Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning trees. Bioinformatics 2002, 18:526-535.
-
(2002)
Bioinformatics
, vol.18
, pp. 526-535
-
-
Xu, Y.1
Olman, V.2
Xu, D.3
-
17
-
-
0141974934
-
EXCAVATOR: a computer program for efficiently mining gene expression data
-
10.1093/nar/gkg783, 206478, 14500821
-
Xu D, Olman V, Wang L, Xu Y. EXCAVATOR: a computer program for efficiently mining gene expression data. Nucleic Acids Research 2003, 31(19):5582-5589. 10.1093/nar/gkg783, 206478, 14500821., http://csbl.bmb.uga.edu/downloads/
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.19
, pp. 5582-5589
-
-
Xu, D.1
Olman, V.2
Wang, L.3
Xu, Y.4
-
18
-
-
0043130613
-
Identification of regulatory binding sites using minimum spanning trees
-
Olman V, Xu D, Xu Y. Identification of regulatory binding sites using minimum spanning trees. Pacific Symposium on Biocomputing 2003, 327-338.
-
(2003)
Pacific Symposium on Biocomputing
, pp. 327-338
-
-
Olman, V.1
Xu, D.2
Xu, Y.3
-
19
-
-
0345614410
-
CUBIC: identification of regulatory binding sites through data clustering
-
10.1142/S0219720003000162, 15290780
-
Olman V, Xu D, Xu Y. CUBIC: identification of regulatory binding sites through data clustering. J Bioinform Comput Biol 2003, 1:21-40. 10.1142/S0219720003000162, 15290780., http://csbl.bmb.uga.edu/downloads/cubic
-
(2003)
J Bioinform Comput Biol
, vol.1
, pp. 21-40
-
-
Olman, V.1
Xu, D.2
Xu, Y.3
-
20
-
-
67549141548
-
Parallel clustering algorithm for large data sets with applications in bioinformatics
-
Olman V, Mao F, Wu H, Xu Y. Parallel clustering algorithm for large data sets with applications in bioinformatics. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2009, 6(2):344-352.
-
(2009)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.6
, Issue.2
, pp. 344-352
-
-
Olman, V.1
Mao, F.2
Wu, H.3
Xu, Y.4
-
21
-
-
13244258381
-
Iterative class discovery and feature selection using minimal spanning trees
-
520744, 15355552
-
Varma S, Simon R. Iterative class discovery and feature selection using minimal spanning trees. BMC Bioinformatics 2004, 5(126). 520744, 15355552.
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.126
-
-
Varma, S.1
Simon, R.2
-
22
-
-
0037620665
-
Reconstructing the temporal ordering of biological samples using microarray data
-
10.1093/bioinformatics/btg081, 12724294
-
Magwene PM, Lizardi P, Kim J. Reconstructing the temporal ordering of biological samples using microarray data. Bioinformatics 2003, 19(7):842-850. 10.1093/bioinformatics/btg081, 12724294.
-
(2003)
Bioinformatics
, vol.19
, Issue.7
, pp. 842-850
-
-
Magwene, P.M.1
Lizardi, P.2
Kim, J.3
-
24
-
-
71549129608
-
Doxygen
-
Doxygen. , http://www.doxygen.org/
-
-
-
-
25
-
-
0034274870
-
An open graph visualization system and its applications to software engineering
-
Gansner ER, North SC. An open graph visualization system and its applications to software engineering. Software - Practice and Experience 2000, 30(11):1203-1233., http://www.graphviz.org/
-
(2000)
Software - Practice and Experience
, vol.30
, Issue.11
, pp. 1203-1233
-
-
Gansner, E.R.1
North, S.C.2
-
26
-
-
35048884271
-
Open MPI: goals, concept, and design of a next generation MPI implementation
-
Gabriel E, Fagg GE, Bosilca G, Angskun T, Dongarra JJ, Squyres JM, Sahay V, Kambadur P, Barrett B, Lumsdaine A, Castain RH, Daniel DJ, Graham RL, Woodall TS. Open MPI: goals, concept, and design of a next generation MPI implementation. Proc 11th European PVM/MPI Users' Group Meeting, of Lecture Notes in Computer Science 2004, 3241:97-104., http://www.open-mpi.org/
-
(2004)
Proc 11th European PVM/MPI Users' Group Meeting, of Lecture Notes in Computer Science
, vol.3241
, pp. 97-104
-
-
Gabriel, E.1
Fagg, G.E.2
Bosilca, G.3
Angskun, T.4
Dongarra, J.J.5
Squyres, J.M.6
Sahay, V.7
Kambadur, P.8
Barrett, B.9
Lumsdaine, A.10
Castain, R.H.11
Daniel, D.J.12
Graham, R.L.13
Woodall, T.S.14
-
27
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
10.1038/75556, 10802651
-
The Gene Ontology Consortium Gene Ontology: tool for the unification of biology. Nature Genetics 2000, 25:25-29. 10.1038/75556, 10802651., http://www.geneontology.org/
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
-
28
-
-
49549087657
-
Cluster Analysis Basics and Extensions
-
Maechler M, Rousseeuw P, Struyf A, Hubert M. Cluster Analysis Basics and Extensions. 2005, , http://cran.r-project.org/web/packages/cluster/
-
(2005)
-
-
Maechler, M.1
Rousseeuw, P.2
Struyf, A.3
Hubert, M.4
-
29
-
-
47049092131
-
Creatine improves health and survival of mice
-
10.1016/j.neurobiolaging.2007.03.001, 17416441
-
Bender A, Beckers J, Schneider I, Hölter SM, Haack T, Ruthsatz T, Vogt-Weisenhorn DM, Becker L, Genius J, Rujescu D, Irmler M, Mijalski T, Mader M, Quintanilla-Martinez L, Fuchs H, Gailus-Durner V, Hrabé de Angelis M, Wurst W, Schmidth J, Klopstock T. Creatine improves health and survival of mice. Neurobiology of Aging 2008, 29(9):1404-1411. 10.1016/j.neurobiolaging.2007.03.001, 17416441., http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS2765
-
(2008)
Neurobiology of Aging
, vol.29
, Issue.9
, pp. 1404-1411
-
-
Bender, A.1
Beckers, J.2
Schneider, I.3
Hölter, S.M.4
Haack, T.5
Ruthsatz, T.6
Vogt-Weisenhorn, D.M.7
Becker, L.8
Genius, J.9
Rujescu, D.10
Irmler, M.11
Mijalski, T.12
Mader, M.13
Quintanilla-Martinez, L.14
Fuchs, H.15
Gailus-Durner, V.16
Hrabé de Angelis, M.17
Wurst, W.18
Schmidth, J.19
Klopstock, T.20
more..
-
30
-
-
40749101545
-
Detection of a microRNA signal in an in vivo expression set of mRNAs
-
10.1371/journal.pone.0000804, 1950084, 17726534
-
Liu T, Papagiannakopoulos T, Puskar K, Qi S, Santiago F, Clay W, Lao K, Lee Y, Nelson SF, Kornblum HI, Doyle F, Petzold L, Shraiman B, Kosik KS. Detection of a microRNA signal in an in vivo expression set of mRNAs. PLoS ONE 2007, 2(8):e804. 10.1371/journal.pone.0000804, 1950084, 17726534., http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS3069
-
(2007)
PLoS ONE
, vol.2
, Issue.8
-
-
Liu, T.1
Papagiannakopoulos, T.2
Puskar, K.3
Qi, S.4
Santiago, F.5
Clay, W.6
Lao, K.7
Lee, Y.8
Nelson, S.F.9
Kornblum, H.I.10
Doyle, F.11
Petzold, L.12
Shraiman, B.13
Kosik, K.S.14
-
31
-
-
44249114568
-
Cell identity mediates the response of Arabidopsis roots to abiotic stress
-
10.1126/science.1153795, 18436742
-
Dinneny JR, Long TA, Wang JY, Jung JW, Mace D, Pointer S, Barron C, Brady SM, Schiefelbein J, Benfey PN. Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science 2008, 320(5878):942-945. 10.1126/science.1153795, 18436742., http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS3216
-
(2008)
Science
, vol.320
, Issue.5878
, pp. 942-945
-
-
Dinneny, J.R.1
Long, T.A.2
Wang, J.Y.3
Jung, J.W.4
Mace, D.5
Pointer, S.6
Barron, C.7
Brady, S.M.8
Schiefelbein, J.9
Benfey, P.N.10
-
32
-
-
0011581750
-
-
C++ In-Depth Series, New York, USA: Addison-Wesley Publishing Co
-
Siek JG, Lee LQ, Lumsdaine A. The Boost Graph Library: User Guide and Reference Manual 2002, C++ In-Depth Series, New York, USA: Addison-Wesley Publishing Co.
-
(2002)
The Boost Graph Library: User Guide and Reference Manual
-
-
Siek, J.G.1
Lee, L.Q.2
Lumsdaine, A.3
|