메뉴 건너뛰기




Volumn 5877 LNCS, Issue , 2009, Pages 45-54

Advancing the deoxyribozyme-based logic gate design process

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL ANALYSIS; COMPUTATIONAL PREDICTIONS; DEOXYRIBOZYMES; HIGH-THROUGHPUT; IN-SILICO; MODELING TOOL; MOLECULAR ARRAYS; MOLECULAR COMPUTATIONS; PREDICTIVE VALUES;

EID: 71449110564     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-10604-0_5     Document Type: Conference Paper
Times cited : (2)

References (18)
  • 1
    • 0028114541 scopus 로고
    • Molecular computation of solutions to combinatorial problems
    • Adleman, L.: Molecular computation of solutions to combinatorial problems. Sci. 266, 1021-1024 (1994)
    • (1994) Sci , vol.266 , pp. 1021-1024
    • Adleman, L.1
  • 2
    • 35248820719 scopus 로고    scopus 로고
    • Andronescu, M., Dees, D., Slaybaugh, L., Zhao, Y., Condon, A., Cohen, B., Skiena, S.: Algorithms for testing that sets of DNA words concatenate without secondary structure. In: Hagiya, M., Ohuchi, A. (eds.) DNA 2002. LNCS, 2568, pp. 182-195. Springer, Heidelberg (2003)
    • Andronescu, M., Dees, D., Slaybaugh, L., Zhao, Y., Condon, A., Cohen, B., Skiena, S.: Algorithms for testing that sets of DNA words concatenate without secondary structure. In: Hagiya, M., Ohuchi, A. (eds.) DNA 2002. LNCS, vol. 2568, pp. 182-195. Springer, Heidelberg (2003)
  • 3
    • 2642555548 scopus 로고    scopus 로고
    • An autonomous molecular computer for logical control of gene expression
    • Benenson, Y., Gil, B., Ben-Dor, U., Adar, R., Shapiro, E.: An autonomous molecular computer for logical control of gene expression. Nat. 429, 423-429 (2004)
    • (2004) Nat , vol.429 , pp. 423-429
    • Benenson, Y.1    Gil, B.2    Ben-Dor, U.3    Adar, R.4    Shapiro, E.5
  • 5
    • 2542514671 scopus 로고    scopus 로고
    • Paradigms for Computational Nucleic Acid Design
    • Dirks, R., Lin, M., Winfree, E., Pierce, N.: Paradigms for Computational Nucleic Acid Design. Nucl. Acids Res. 32(4), 1392-1403 (2004)
    • (2004) Nucl. Acids Res , vol.32 , Issue.4 , pp. 1392-1403
    • Dirks, R.1    Lin, M.2    Winfree, E.3    Pierce, N.4
  • 6
    • 33847609597 scopus 로고    scopus 로고
    • Thermodynamic Analysis of Interacting Nucleic Acid Strands
    • Dirks, R., Bois, J., Schaeffer, J., Winfree, E., Pierce, N.: Thermodynamic Analysis of Interacting Nucleic Acid Strands. SIAM 49(1), 65-88 (2007)
    • (2007) SIAM , vol.49 , Issue.1 , pp. 65-88
    • Dirks, R.1    Bois, J.2    Schaeffer, J.3    Winfree, E.4    Pierce, N.5
  • 7
    • 43749099405 scopus 로고    scopus 로고
    • Beyond energy minimization: Approaches to the kinetic folding of RNA
    • Flamm, C., Hofacker, I.: Beyond energy minimization: approaches to the kinetic folding of RNA. Chem. Mon. 139(4), 447-457 (2008)
    • (2008) Chem. Mon , vol.139 , Issue.4 , pp. 447-457
    • Flamm, C.1    Hofacker, I.2
  • 8
    • 0037439956 scopus 로고    scopus 로고
    • Motifs in Nucleic Acids: Molecular Mechanics Restraints for Base Pairing and Base Stacking
    • Harvey, S., Wang, C., Teletchea, S., Lavery, R.: Motifs in Nucleic Acids: Molecular Mechanics Restraints for Base Pairing and Base Stacking. Jour. Comp. Chem. 24(1), 1-9 (2003)
    • (2003) Jour. Comp. Chem , vol.24 , Issue.1 , pp. 1-9
    • Harvey, S.1    Wang, C.2    Teletchea, S.3    Lavery, R.4
  • 9
    • 33645602294 scopus 로고    scopus 로고
    • Heitsch, C., Condon, A., Hoos, H.: From RNA Secondary Structure to Coding Theory: A Combinatorial Approach. In: Hagiya, M., Ohuchi, A. (eds.) DNA 2002. LNCS, 2568, pp. 215-228. Springer, Heidelberg (2003)
    • Heitsch, C., Condon, A., Hoos, H.: From RNA Secondary Structure to Coding Theory: A Combinatorial Approach. In: Hagiya, M., Ohuchi, A. (eds.) DNA 2002. LNCS, vol. 2568, pp. 215-228. Springer, Heidelberg (2003)
  • 10
    • 0001962564 scopus 로고    scopus 로고
    • The Molecular Modeling Toolkit: A New Approach to Molecular Simulations
    • Hinsen, K.: The Molecular Modeling Toolkit: A New Approach to Molecular Simulations. Jour. Comp. Chem. 21(2), 79-85 (2000)
    • (2000) Jour. Comp. Chem , vol.21 , Issue.2 , pp. 79-85
    • Hinsen, K.1
  • 11
    • 85142206620 scopus 로고    scopus 로고
    • Hoops, S., Sahle, S., Gauges, R., Lee, C., Pahle, J., Simus, N., Singhal, M., Xu, L., Mendes, P., Kummer, U.: COPASI - A Complex Pathway SImulator. Bionfrmtcs. 22, 3067-3074 (2006)
    • Hoops, S., Sahle, S., Gauges, R., Lee, C., Pahle, J., Simus, N., Singhal, M., Xu, L., Mendes, P., Kummer, U.: COPASI - A Complex Pathway SImulator. Bionfrmtcs. 22, 3067-3074 (2006)
  • 13
    • 33846127486 scopus 로고    scopus 로고
    • Macdonald, J., Yang, L., Sutovic, M., Lederman, H., Pendri, K., Lu, W., Andrews, B., Stefanovic, D., Stojanovic, M.: Medium Scale Integration of Molecular Logic Gates in an Automaton. Nano. Ltrs. 6(11), 2598-2603 (2006)
    • Macdonald, J., Yang, L., Sutovic, M., Lederman, H., Pendri, K., Lu, W., Andrews, B., Stefanovic, D., Stojanovic, M.: Medium Scale Integration of Molecular Logic Gates in an Automaton. Nano. Ltrs. 6(11), 2598-2603 (2006)
  • 14
    • 23144440350 scopus 로고    scopus 로고
    • DINAMelt web server for nucleic acid melting prediction
    • Markham, N., Zuker, M.: DINAMelt web server for nucleic acid melting prediction. Nucl. Acids Res. 33, W577-W581 (2005)
    • (2005) Nucl. Acids Res , vol.33
    • Markham, N.1    Zuker, M.2
  • 15
    • 0042360338 scopus 로고    scopus 로고
    • A deoxyribozyme-based molecular automaton
    • Stojanovic, M., Stefanovic, D.: A deoxyribozyme-based molecular automaton. Nat. Biotech. 21(9), 1069-1074
    • Nat. Biotech , vol.21 , Issue.9 , pp. 1069-1074
    • Stojanovic, M.1    Stefanovic, D.2
  • 16
    • 23144463133 scopus 로고    scopus 로고
    • Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots
    • Xayaphoummine, T., Bucher, T., Isambert, H.: Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots. Nucl. Acids Res. 33, 605-610 (2005)
    • (2005) Nucl. Acids Res , vol.33 , pp. 605-610
    • Xayaphoummine, T.1    Bucher, T.2    Isambert, H.3
  • 17
    • 0042121256 scopus 로고    scopus 로고
    • Mfold Web Server for Nucleic Acid Folding and Hybridization Prediction
    • Zuker, M.: Mfold Web Server for Nucleic Acid Folding and Hybridization Prediction. Nucl. Acids Res. 31(13), 3406-3415
    • Nucl. Acids Res , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 18
    • 71449099447 scopus 로고    scopus 로고
    • National Select Agent Registry
    • National Select Agent Registry, http://www.selectagents.gov


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.