Assessment of genetic diversity in Australian canola (Brassica napus L.) cultivars using SSR markers

Crop and Pasture Science

Volumn 60, Issue 12, 2009, Pages 1193-1201

  Wang, J ^a   Kaur, S ^b   Cogan, N O I ^b   Dobrowolski, M P ^a   Salisbury, P A ^b,d   Burton, W A ^b   Baillie, R ^b   Hand, M ^b   Hopkins, C ^b   Forster, J W ^b,c   Smith, K F ^b,c   Spangenberg, G ^b,c  

^a DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^b LA TROBE UNIVERSITY   (Australia)

^c LA TROBE UNIVERSITY   (Australia)

^d UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

AMOVA; Cluster; PCA; Rapeseed

Indexed keywords

CANOLA; CLUSTER ANALYSIS; CULTIVAR; DNA; GENETIC DIFFERENTIATION; GENETIC MARKER; GENOTYPE; MOLECULAR ANALYSIS; POLYMORPHISM; REPRODUCTIVE BEHAVIOR;

BRASSICA NAPUS; BRASSICA NAPUS VAR. NAPUS;

EID: 71049174890     PISSN: 18360947     EISSN: None     Source Type: Journal    
DOI: 10.1071/CP09165     Document Type: Article

References (22)

1. Becker HC, Engqvist GM, Karlsson B (1995) Comparison of rapeseed cultivars and resynthesized lines based on allozyme and RFLP markers. Theoretical and Applied Genetics 91, 62-67. doi: 10.1007/BF00220859
2. Burton WA, Ripley VL, Potts DA, Salisbury PA (2004) Assessment of genetic diversity in selected breeding lines and cultivars of canola quality Brassica juncea and their implications for canola breeding. Euphytica 136, 181-192. doi: 10.1023/B:EUPH.0000030672.56206.f0 (Pubitemid 38995196)
3. Chen S, Nelson MN, Ghamkhar K, Fu T, Cowling WA (2008) Divergent patterns of allelic diversity from similar origins: the case of oilseed rape (Brassica napus L.) in China and Australia. Genome 51, 1-10. doi: 10.1139/G07-095 (Pubitemid 351287664)
4. Cowling WA (2007) Genetic diversity in Australian canola and implications for crop breeding for changing future environments. Field Crops Research 104, 103-111. doi: 10.1016/j.fcr.2006.12.014 (Pubitemid 47380147)
5. Dice LR (1945) Measures of the amount of ecologic association between species. Ecology 26, 297-302. doi: 10.2307/1932409
6. Diers BW, Osborn TC (1994) Genetic diversity of oilseed Brassica napus germplasm based on restriction fragment length polymorphisms. Theoretical and Applied Genetics 88, 662-668. doi: 10.1007/BF01253968
7. Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction sites. Genetics 131, 479-491.
8. Hasan M, Seyis F, Badani A, Pons-Kühnemann J, Friedt W, Lühs W, Snowdon R (2006) Analysis of genetic diversity in the Brassica napus L. gene pool using SSR markers. Genetic Resources and Crop Evolution 53, 793-802. doi: 10.1007/s10722-004-5541-2
9. Huff DR, Peakall R, Smouse PE (1993) RAPD variation within and among natural populations of outcrossing buffalograss Buchloe dactyloides (Nutt.) Engelm. Theoretical and Applied Genetics 86, 927-934. doi: 10.1007/BF00211043
10. Kaur S, Cogan NOI, Ye G, Baillie RC, Hand ML, Ling AE, Mcgearey AK, Kaur J, Hopkins CJ, Todorovic M, Mountford H, Edwards D, Batley J, Burton W, Salisbury P, Gororo N, Marcroft S, Kearney G, Smith KF, Forster JW, Spangenberg GC (2009) Genetic map construction and QTL mapping of resistance to blackleg (Leptospheria maculans) disease in Australian canola (Brassica napus L.) cultivars. Theoretical and Applied Genetics, (available online). doi: 10.1007/s00122-009-1160-9
11. Lombard V, Baril CP, Dubreuil P, Blouet F, Zhang D (2000) Genetic relationships and fingerprinting of rapeseed cultivars by AFLP: consequences for varietal registration. Crop Science 40, 1417-1425.
12. Lowe A, Moule C, Trick M, Edwards K (2004) Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theoretical and Applied Genetics 108, 1103-1112. doi: 10.1007/s00122-003-1522-7 (Pubitemid 38549882)
13. Mailer RJ, Wratten N, Vonarx M (1997) Genetic diversity amongst Australian canola cultivars determined by randomly amplified polymorphic DNA. Australian Journal of Experimental Agriculture 37, 793-800. doi: 10.1071/EA97059
14. Peakall R, SmousePE (2006) Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288-295. doi: 10.1111/j.1471-8286.2005.01155.x (Pubitemid 43373825)
15. Piquemal J, Cinquin E, Couton F, Rondeau C, Seignoret E, Doucet I, Perret D, Villeger M-J, Vincourt P, Blanchard P (2005) Construction of an oilseed rape (Brassica napus L.) genetic map with SSR markers. Theoretical and Applied Genetics 111, 1514-1523. doi: 10.1007/s00122-005-0080-6 (Pubitemid 41618652)
16. Plieske J, Struss D (2001) Microsatellite markers for genome analysis in Brassica. I. Development in Brassica napus and abundance in Brassicaceae species. Theoretical and Applied Genetics 102, 689-694. doi: 10.1007/s001220051698 (Pubitemid 32375818)
17. Rohlf FJ (2002) 'NTSYS-PC: Numerical taxonomy and multivariate analysis system, Ver. 2.10z.' (Exeter Software: Setauket, NY)
18. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-425.
19. Salisbury P, Wratten N (1999) Brassica napus breeding. In 'Canola in Australia: The First 30 Years. 10th International Rapeseed Congress'. (EdsP Salisbury,TPotter,GMcDonald,AGreen) pp. 29-35. (Organising Committee of the 10th International Rapeseed Congress: Canberra, ACT)
20. Salisbury PA, Ballinger DJ, Wratten N, Plummer KM, Howlett BJ (1995) Blackleg disease on oilseed Brassica in Australia: a review. Australian Journal of Experimental Agriculture 35, 665-672. doi: 10.1071/EA9950665
21. Seyis F, Snowdon R, Luhs W, Friedt W (2003) Molecular characterization of novel resynthesized rapeseed (Brassica napus) lines and analysis of their genetic diversity in comparison with spring rapeseed cultivars. Plant Breeding 122, 473-478. doi: 10.1111/j.1439-0523.2003.00859.x (Pubitemid 38062049)
22. Tommasini L, Batley J, Arnold GM, Cooke RJ, Donini P, Lee D, Law JR, Lowe C, Moule C, Trick M, Edwards KJ (2003) The development of multiplex simple sequence repeat (SSR) markers to complement distinctness, uniformity and stability testing of rape (Brassica napus L.) varieties. Theoretical and Applied Genetics 106, 1091-1101. doi: 10.1007/s00122-002-1125-8