QTL mapping for agronomic and fibre traits using two interspecific chromosome substitution lines of Upland cotton

Plant Breeding

Volumn 128, Issue 6, 2009, Pages 671-679

  Luan, M ^a,b   Guo, X ^a   Zhang, Y ^a   Yao, J ^a   Chen, W ^a  

^a AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Chromosome substitution line; Cotton; QTL; Vield fibre quality

Indexed keywords

GOSSYPIUM BARBADENSE; GOSSYPIUM HIRSUTUM;

EID: 70649111457     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2009.01650.x     Document Type: Article

References (45)

1. Ashikari, M., H. Sakakibara, S. Lin, T. Yamamoto, T. Takashi, A. Nishimura, E. R. Angeles, Q. Qian, H. Kitano, and M. Matsuoka, 2005: Cytokinin oxidase regulates rice grain production. Science 309, 741-745.
2. Berke, T. G., P. S. Baenziger, and W. R. Morris, 1992a: Chromosomal location of wheat quantitative trait loci affecting agronomie performance, using reciprocal chromosome substitutions. Crop Sci. 32, 621-627.
3. Berke, T. G., P. S. Baenziger, and W. R. Morris, 1992b: Chromosomal location of wheat quantitative trait loci affecting stability of six traits, using reciprocal chromosome substitutions. Crop Sci. 32, 628-633.
4. Doerge, R. W., and G. A. Churchill, 1996: Permutation tests for multiple loci affecting a quantitative character. Genetics 142, 285-294.
5. Frelichowski, J. E., Jr, M. B. Palmer, D. Mains, J. P. Tomkins, R. G. Cantrell, D. M. Stelly, J. Yu, R. J. Kohel, and M. Ulloa, 2006: Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. Mol. Genet. Genomics 275, 479-491.
6. Guo, W., C. Cai, C. Wang, Z. Han, X. Song, K. Wang, X. Niu, C. Wang, K. Lu, B. Shi, and T. Zhang, 2007: A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics 176, 527-541. (Pubitemid 350021045)
7. 2 hybrids. Crop Sci. 42, 1841-1847.
8. Han, Z., C. Wang, X. Song, W. Guo, J. Guo, C. Li, X. Chen, and T. Zhang, 2006: Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theor. Appl. Genet. 112, 430-439.
9. He, D., Z. Lin, X. Zhang, Y. Nie, X. Guo, Y. Zhang, and W. Li, 2007: QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum × Gossypium harbadense. Euphytica 153, 181-197.
10. He, D. H., Z. X. Lin, X. L. Zhang, Y. X. Zhang, W. Li, Y. C. Nie, and. X. P. Guo, 2008: Dissection of genetic variance of fibre quality in advanced generations from an interspecific cross of Gossypium hirsutum and G. barbadense. Plant Breeding 127, 286-294.
11. Hua, J., Y. Xing, C. Xu, X. Sun, S. Yu, and. Q. Zhang, 2002: Genetic dissection of an elite rice hybrid revealed that heterozygotes are not always advantageous for performance. Genetics 162, 1885-1895.
12. Jenkins, J. N., J. C. McCarty, J. Wu, S. Saha, O. Gutierrez, R. Hayes, and D. M. Stelly, 2007: Genetic effects of thirteen Gossypium barbadense L. Chromosome Substitution Lines in topcrosses with Upland cotton cultivars: II. Fiber quality traits. Crop Sci. 47, 561-572.
13. Kohel, R. J., J. Yu, Y. H. Park, and G. R. Lazo, 2001: Molecular mapping and characterization of traits controlling fiber quality in cotton. Euphytica 121, 163-172. (Pubitemid 33023583)
14. Lacape, J. M., T. B. Nguyen, B. Courtois, J. L. Belot, M. Giband, J. P. Gourlot, G. Gawryziak, S. Roques, and B. Hau, 2005: QTL analysis of cotton fiber quality using multiple Gossypium hirsutum × Gossypium barbadense backcross generations. Crop Sci. 45, 123-140.
15. Lander, E. S., and D. Botstein, 1989: Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121, 185-199.
16. Lander, E. S., P. Green, J. Abrahamson, A. Barlow, M. J. Daly, S. E. Lincoln, and I. Newburg, 1987: MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1, 174-181.
17. Li, Z. K., L. J. Luo, H. W. Mei, D. L. Wang, Q. Y. Shu, R. Tabien, D. B. Zhong, C. S. Ying, J. W. Stansel, G. S. Khush, and A. H. Paterson, 2001: Overdominant epistatic loci are the primary genetic basis of inbreeding depression and heterosis in rice. I. Biomass and grain yield. Genetics 158, 1737-1753.
18. Li, J. M., M. Thomson, and R. S. McCouch, 2004: Fine mapping of a grain weight quantitative trait locus in the pericentromeric region of rice chromosome 3. Genetics 168, 2187-2195.
19. Lin, Z. X., D. H. He, X. L. Zhang, Y. C. Nie, X. P. Guo, C. D. Feng, and J. Mc. D. Stewart, 2005: Linkage map construction and mapping QTLs for cotton fiber quality using SRAP, SSR and RAPD. Plant Breeding 124, 180-187.
20. Mckenzie, W. H., 1970: Fertility relationships among interspecific hybrid progenies of Gossypium. Crop Sci. 10, 571-574.
21. Nguyen, T. B., M. Giband, P. Brottier, A. M. Risterucci, and J. M. Lacape, 2004: Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor. Appl. Genet. 109, 167-175.
22. Park, Y. H., M. S. Alabady, M. Ulloa, B. Sickler, T. A. Willems, J. Yu, D. M. Stelly, R. J. Kohel, O. M. El-Shihy, and R. G. Cantrell, 2005: Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred line cotton population. Mol. Genet Genomics 274, 428-441.
23. Paterson, A. H., Y. Saranga, M. Menz, C. X. Jiang, and R. J. Wright, 2003: QTL analysis of genotype x environment interactions affecting cotton fiber quality. Theor. Appl. Genet. 106, 384-396.
24. Qin, H., W. Guo, Y. M. Zhang, and T. Zhang, 2008: QTL mapping of yield and fiber traits based on a four-way cross population in Gossypium hirsutum. L. Theor. Appl. Genet. 117, 883-894.
25. Ren, L., W. Guo, and T. Zhang, 2002: Identification of quantitative trait loci (QTLs) affecting yield and fiber properties in chromosome 16 in cotton using substitution line. Acta Bot. Sin. 44, 815-820.
26. Ren, Z. H., J. P. Gao, L. G. Li, X. L. Cai, W. Huang, D. Y. Chao, M. Z. Zhu, Z. Y. Wang, S. Luan, and H. X. Lin, 2005: A rice quantitative trait locus for salt tolerance encodes a sodium transporter. Nat. Genet. 37, 1141-1146.
27. Rong, J., C. Abbey, J. E. Bowers, C. L. Brubaker, C. Chang, P. W. Chee, T. A. Delmonte, X. Ding, J. J. Garza, B. S. Marler, C. Park, G. J. Pierce, K. M. Rainey, V. K. Rastogi, S. R. Schulze, N. L. Trolinder, J. F. Wendel, T. A. Wilkins, T. D. Williams-Coplin, R. A. Wing, R. J. Wright, X. Zhao, L. Zhu, and A. H. Paterson, 2004: A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics 166, 389-417. (Pubitemid 38364728)
28. Saha, S., J. Wu, J. N. Jenkins, J. C. Mccarty Jr, O. A. Gutierrez, D. M. Stelly, R. G. Percy, and D. A. Raska, 2004: Effect of chromosome substitutions from Gossypium barbadense L. 3-79 into G. hirsutum L. TM-1 on agronomic and fiber traits. J. Cot. Sci. 8, 162-169.
29. Saha, S., J. N. Jenkins, J. Wu, J. C. McCarty Jr, O. A. Gutierrez, R. G. Percy, R. G. Cantrell, and D. M. Stelly, 2006: Effects of chromosome specific introgression in Upland cotton on fiber and agronomic traits. Genetics 172, 1-12.
30. Saha, S., J. N. Jenkins, J. Wu, J. C. McCarty Jr, and D. M., Stelly, 2008: Genetic analysis of agronomic and fibre traits using four interspecific chromosome substitution lines in cotton. Plant Breeding 127, 612-618.
31. SAS Institute Inc., 1999: SAS User's Guide, Release 8.01 Edition. SAS Institute Inc., Cary, NC
32. Shen, X., W. Guo, X. Zhu, Y. Yuan, J. Z. Yu, R. J. Kohel, and T. Zhang, 2005: Molecular mapping of QTLs for qualities in three diverse lines in Upland, cotton using SSR markers. Mol. Breed. 15, 169-181.
33. Shen, X., W. Guo, Q. Lu, X. Zhu, Y. Yuan, and T. Zhang, 2007: Genetic mapping of quantitative trait loci for fiber quality and yield trait by RIL approach in Upland cotton. Euphytica 155, 371-380. (Pubitemid 46632335)
34. Song, G. L., R. X. Cui, K. B. Wang, L. P. Guo, S. H. Li, and C. Y. Wang, 1998: A rapid improved CTAB method for extraction of cotton genomic DNA. Acta Gossypii Sin. 10, 273-275.
35. Stelly, D. M., S. Saha, D. A. Raska, J. N. Jenkins, J. C McCarty, and O. A. Gutierrez, 2005: Registration of 17 germplasm lines of upland cotton (Gossypium hirsutum), each with a different pair of G. barbadense chromosome or chromosome arms substituted for the respective G. hirsutum chromosome or chromosome arms. Crop Sci. 45, 2663-2665.
36. Stephens, S. G., 1949: The cytogenetics of speciation in Gossypium. 1. Selective elimination of the donor parent genotype in interspecific backerosses. Genetics 34, 627-637.
37. Ulloa,M.,andW.R.MeredithJr,2000: GeneticlinkagemapandQTLanalysisofgronomicandfiberqualitytraitsinanintraspecific population.J.CottonSci.4,161-170.(Pubitemid38908020)
38. Ulloa, M., S. Saha, J. N. Jenkins, W. R. Meredith Jr, J. C. McCarty Jr, and D. M. Stelly, 2005: Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap. J. Hered. 96, 132-144.
39. Wang, S., C. J. Basten, and Z. B. Zeng, 2003: Windows QTL Cartographer 2.0. Department of Statistics, North Carolina State University, Raleigh, NC
40. Wang, B., W. Guo, X. Zhu, Y. Wu, N. Huang, and T. Zhang, 2006: QTL mapping of fiber quality in an elite hybrid derived-RIL population of upland cotton. Euphytica 152, 367-378.
41. Wang, B., W. Guo, X. Zhu, Y. Wu, N. Huang, and T. Zhang, 2007: QTL mapping of yield and yield components for elite hybrid derived-RILs in Upland cotton. J. Genet. Genomics 34, 35-45.
42. Wu, J., J. N. Jenkins, J. C. McCarty, S. Saha, and D. M. Stelly, 2006: An additive-dominance model to determine chromosomal effects in chromosome substitution lines and other gemplasms. Theor. Appl. Genet. 112, 391-399.
43. Wu, J., J. N. Jenkins, J. C. McCarty, S. Saha, and R. Percy, 2008: Genetic association of lint yield with its components in cotton chromosome substitution lines. Euphytica 164, 199-207.
44. Yu, J., S. Yu, C. Lu, W. Wang, S. Fan, M. Song, Z. Lin, X. Zhang, and J. Zhang, 2007: High-density linkage map of cultivated allotetraploid cotton based, on SSR, TRAP, SRAP and AFLP markers. J. Integr. Plant Biol. 47, 1382-1390.
45. Zhang, J., Y. T. Wu, and W. Z. Guo, 2000: Fast screening of microsatellite markers in cotton with PAGE/Silver staining. Acta Gossypii Sin. 12, 267-269.