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Volumn , Issue , 2008, Pages 519-525

Using base pairing probabilities for MiRNA recognition

Author keywords

[No Author keywords available]

Indexed keywords

BASE-PAIRING; BIOLOGICAL POINTS;

EID: 70449501058     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/SYNASC.2008.66     Document Type: Conference Paper
Times cited : (2)

References (35)
  • 1
    • 70449478297 scopus 로고    scopus 로고
    • http://www.r-project.org/.
  • 4
    • 3843089328 scopus 로고    scopus 로고
    • Detection of 91 potential conserved plant micro RNAs in arabidopsis thaliana and oryza sativa identifies important target genes
    • E. Bonnet, J. Wuyts, P. Rouzé, and Y. Van de Peer. Detection of 91 potential conserved plant micro RNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. Proc Natl Acad Sci U S A, 101(31):11511-11516, 2004.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , Issue.31 , pp. 11511-11516
    • Bonnet, E.1    Wuyts, J.2    Rouzé, P.3    Van De Peer, Y.4
  • 5
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • L. Breiman. Bagging predictors. Machine Learning, 24(2):123-140, 1996.
    • (1996) Machine Learning , vol.24 , Issue.2 , pp. 123-140
    • Breiman, L.1
  • 6
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • L. Breiman. Random Forests. Machine Learning, 45(1):5-32, 2001.
    • (2001) Machine Learning , vol.45 , Issue.1 , pp. 5-32
    • Breiman, L.1
  • 8
    • 34249753618 scopus 로고
    • Support-vector networks
    • C. Cortes and V. Vapnik. Support-vector networks. Machine Learning, 20(3):273-297, 1995.
    • (1995) Machine Learning , vol.20 , Issue.3 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 10
    • 33747876113 scopus 로고    scopus 로고
    • Micro RNA-cancer connection: The beginning of a new tale
    • G. A. Cǎlin and C. M. Croce. Micro RNA-cancer connection: The beginning of a new tale. Cancer Res, 66(15):7390-7394, 2006.
    • (2006) Cancer Res , vol.66 , Issue.15 , pp. 7390-7394
    • Cǎlin, G.A.1    Croce, C.M.2
  • 11
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in caenorhabditis elegans
    • DOI 10.1038/35888
    • A. Fire, S. Xu, M. Montgomery, S. Kostas, S. Driver, and C. Mello. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature, 391(6669):806-811, 1998. (Pubitemid 28099681)
    • (1998) Nature , vol.391 , Issue.6669 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 15
    • 33846650507 scopus 로고    scopus 로고
    • Reliable prediction of drosha processing sites improves micro RNA gene prediction
    • S. Helvik, O. J. Snøve, and P. Sætrom. Reliable prediction of Drosha processing sites improves micro RNA gene prediction. Bioinformatics, 23(2):142-149, 2007.
    • (2007) Bioinformatics , vol.23 , Issue.2 , pp. 142-149
    • Helvik, S.1    Snøve, O.J.2    Sætrom, P.3
  • 16
    • 33747871855 scopus 로고    scopus 로고
    • Hairpins in a haystack: Recognizing micro RNA precursors in comparative genomics data
    • July
    • J. Hertel and P. F. Stadler. Hairpins in a haystack: recognizing micro RNA precursors in comparative genomics data. Bioinformatics, 22(14):e197- e202, July 2006.
    • (2006) Bioinformatics , vol.22 , Issue.14 , pp. 197-202
    • Hertel, J.1    Stadler, P.F.2
  • 17
    • 0043123153 scopus 로고    scopus 로고
    • The vienna RNA secondary structure server
    • I. L. Hofacker. The Vienna RNA secondary structure server. Nucleic Acids Res, 31(13):3429-3431, 2003.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3429-3431
    • Hofacker, I.L.1
  • 19
    • 0038825783 scopus 로고    scopus 로고
    • Computational identification of drosophila micro RNA genes
    • E. C. Lai, P. Tomancak, R. W. Williams, and G. M. Rubin. Computational identification of Drosophila micro RNA genes. Genome Biology, 4(7), 2003.
    • (2003) Genome Biology , vol.4 , Issue.7
    • Lai, E.C.1    Tomancak, P.2    Williams, R.W.3    Rubin, G.M.4
  • 21
    • 0025264854 scopus 로고
    • The equilibrium partition function and base pair binding probabilities for RNA secondary structures
    • J. S. McCaskill. The equilibrium partition function and base pair binding probabilities for RNA secondary structures. Biopolymers, 29:1105-1119, 1990.
    • (1990) Biopolymers , vol.29 , pp. 1105-1119
    • McCaskill, J.S.1
  • 23
    • 21844477027 scopus 로고    scopus 로고
    • Human micro RNA prediction through a probabilistic co-learning model of sequence and structure
    • J.-W. Nam, K.-R. Shin, J. Han, Y. Lee, V. N. Kim, and B.-T. Zhang. Human micro RNA prediction through a probabilistic co-learning model of sequence and structure. Nucleic Acids Research, 33(11):3570-3581, 2005.
    • (2005) Nucleic Acids Research , vol.33 , Issue.11 , pp. 3570-3581
    • Nam, J.-W.1    Shin, K.-R.2    Han, J.3    Lee, Y.4    Kim, V.N.5    Zhang, B.-T.6
  • 24
    • 0001359591 scopus 로고
    • Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans
    • C. Napoli, C. Lemieux, and R. Jorgensen. Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans. Plant Cell, 2(4):279-289, 1990.
    • (1990) Plant Cell , vol.2 , Issue.4 , pp. 279-289
    • Napoli, C.1    Lemieux, C.2    Jorgensen, R.3
  • 25
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • S. B. Needleman and C. D. Wunsch. A general method applicable to the search for similarities in the amino acid sequence of two proteins. Journal of Molecular Biology, 48(3):443-453, 1970.
    • (1970) Journal of Molecular Biology , vol.48 , Issue.3 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 26
    • 34447309058 scopus 로고    scopus 로고
    • De novo SVM classification of precursor micro RNAs from genomic pseudo hairpins using global and intrinsic folding measures
    • K. L. S. Ng and S. Mishra. De novo SVM classification of precursor micro RNAs from genomic pseudo hairpins using global and intrinsic folding measures. Bioinformatics, 23(11):1321-1330, 2007.
    • (2007) Bioinformatics , vol.23 , Issue.11 , pp. 1321-1330
    • Ng, K.L.S.1    Mishra, S.2
  • 27
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI genecentered resources
    • K. D. Pruitt and D. R. Maglott. RefSeq and LocusLink: NCBI genecentered resources. Nucleic Acids Research, 29(1):137-140, 2001.
    • (2001) Nucleic Acids Research , vol.29 , Issue.1 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 28
    • 0032280519 scopus 로고    scopus 로고
    • Boosting the margin: A new explanation for the effectiveness of voting methods
    • R. E. Schapire, Y. Freund, P. Bartlett, and W. S. Lee. Boosting the margin: A new explanation for the effectiveness of voting methods. The Annals of Statistics, 26(5):1651-1686, 1998.
    • (1998) The Annals of Statistics , vol.26 , Issue.5 , pp. 1651-1686
    • Schapire, R.E.1    Freund, Y.2    Bartlett, P.3    Lee, W.S.4
  • 30
    • 43049115363 scopus 로고    scopus 로고
    • A novel representation of RNA secondary structure based on element-contact graphs
    • W. Shu, X. Bo, Z. Zheng, and S. Wang. A novel representation of RNA secondary structure based on element-contact graphs. BMC Bioinformatics, 9(1):188, 2008.
    • (2008) BMC Bioinformatics , vol.9 , Issue.1 , pp. 188
    • Shu, W.1    Bo, X.2    Zheng, Z.3    Wang, S.4
  • 31
    • 46249127789 scopus 로고    scopus 로고
    • Micro RNA prediction with a novel ranking algorithm based on random walks
    • Y. Xu, X. Zhou, and W. Zhang. Micro RNA prediction with a novel ranking algorithm based on random walks. Bioinformatics, 24(13), 2008.
    • (2008) Bioinformatics , vol.24 , Issue.13
    • Xu, Y.1    Zhou, X.2    Zhang, W.3
  • 32
    • 30344447264 scopus 로고    scopus 로고
    • Classification of real and pseudo micro RNA precursors using local structure-sequence features and support vector machine
    • C. Xue, F. Li, T. He, G. Liu, Y. Li, and X. Zhang. Classification of real and pseudo micro RNA precursors using local structure-sequence features and support vector machine. BMC Bioinformatics, 6(310), 2005.
    • (2005) BMC Bioinformatics , vol.6 , Issue.310
    • Xue, C.1    Li, F.2    He, T.3    Liu, G.4    Li, Y.5    Zhang, X.6
  • 33
    • 33745594057 scopus 로고    scopus 로고
    • Combining multi-species genomic data for micro RNA identification using a naive bayes classifier machine learning for identification of micro RNA genes
    • M. Yousef, M. Nebozhyn, H. Shatkay, S. Kanterakis, L. Showe, and M. Showe. Combining multi-species genomic data for micro RNA identification using a Naive Bayes classifier machine learning for identification of micro RNA genes. Bioinformatics, 22(11):1325-1334, 2006.
    • (2006) Bioinformatics , vol.22 , Issue.11 , pp. 1325-1334
    • Yousef, M.1    Nebozhyn, M.2    Shatkay, H.3    Kanterakis, S.4    Showe, L.5    Showe, M.6
  • 34
    • 34547430648 scopus 로고    scopus 로고
    • Exploring essential attributes for detecting micro RNA precursors from background sequences
    • M. M. Dalkilic, S. Kim, and J. Yang, editors, 4316 of Lecture Notes in Computer Science, Springer
    • Y. Zheng, W. Hsu, M.-L. Lee, and L. Wong. Exploring essential attributes for detecting micro RNA precursors from background sequences. In M. M. Dalkilic, S. Kim, and J. Yang, editors, 2006 VDMB Workshop on Data Mining in Bioinformatics, volume 4316 of Lecture Notes in Computer Science, pages 131-145. Springer, 2006.
    • (2006) 2006 VDMB Workshop on Data Mining in Bioinformatics , pp. 131-145
    • Zheng, Y.1    Hsu, W.2    Lee, M.-L.3    Wong, L.4
  • 35
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • M. Zuker and P. Stiegler. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Research, 9(1):133-148, 1981.
    • (1981) Nucleic Acids Research , vol.9 , Issue.1 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.