메뉴 건너뛰기




Volumn 25, Issue 22, 2009, Pages 2969-2974

Improving peptide identification with single-stage mass spectrum peaks

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; DATA MINING; LEARNING ALGORITHM; MASS SPECTROMETRY; MATHEMATICAL ANALYSIS; PEPTIDE ANALYSIS; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEOMICS;

EID: 70449371147     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp501     Document Type: Article
Times cited : (5)

References (20)
  • 1
    • 51449083131 scopus 로고    scopus 로고
    • Multi-spectra peptide sequencing and its applications to multistage mass spectrometry
    • Bandeira,N. et al. (2008) Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. Bioinformatics, 24, i416-i423.
    • (2008) Bioinformatics , vol.24
    • Bandeira, N.1
  • 2
    • 3142702204 scopus 로고    scopus 로고
    • Tandem: Matching proteins with tandem mass spectra
    • Craig,R. and Beavis,R.C. (2004) Tandem: Matching proteins with tandem mass spectra. Bioinformatics, 20, 1466-1467.
    • (2004) Bioinformatics , vol.20 , pp. 1466-1467
    • Craig, R.1    Beavis, R.C.2
  • 3
    • 84933493212 scopus 로고
    • Multiple criteria decision making, multiattribute utility theory: The next ten years
    • Dyer,J.S. et al. (1992) Multiple criteria decision making, multiattribute utility theory: The next ten years. Manage. Sci., 38, 645-654.
    • (1992) Manage. Sci , vol.38 , pp. 645-654
    • Dyer, J.S.1
  • 4
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng,J.K. et al. (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom., 5, 976-989.
    • (1994) J. Am. Soc. Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1
  • 5
    • 66749129629 scopus 로고    scopus 로고
    • A ranking-based scoring function for peptide-spectrum matches
    • Frank,A. (2009) A ranking-based scoring function for peptide-spectrum matches. J. Proteome Res., 8, 2241-2252.
    • (2009) J. Proteome Res , vol.8 , pp. 2241-2252
    • Frank, A.1
  • 6
    • 62149121444 scopus 로고    scopus 로고
    • Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data
    • Jaitly,N. et al. (2009) Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data. BMC Bioinformatics, 10, 87.
    • (2009) BMC Bioinformatics , vol.10 , pp. 87
    • Jaitly, N.1
  • 7
    • 35748972060 scopus 로고    scopus 로고
    • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    • Kall,L. et al. (2007) Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat. Methods, 4, 923-925.
    • (2007) Nat. Methods , vol.4 , pp. 923-925
    • Kall, L.1
  • 8
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller,A. et al. (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem., 74, 5383-5392.
    • (2002) Anal. Chem , vol.74 , pp. 5383-5392
    • Keller, A.1
  • 9
    • 34548041670 scopus 로고    scopus 로고
    • Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions
    • Klammer,A.A. et al. (2007) Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions. Anal. Chem., 79, 6111-6118.
    • (2007) Anal. Chem , vol.79 , pp. 6111-6118
    • Klammer, A.A.1
  • 10
    • 46249088907 scopus 로고    scopus 로고
    • Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification
    • Klammer,A.A. et al. (2008) Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification. Bioinformatics 24, i348-i356.
    • (2008) Bioinformatics , vol.24
    • Klammer, A.A.1
  • 11
    • 38649094868 scopus 로고    scopus 로고
    • The standard protein mix database: A diverse dataset to assist in the production of improved peptide and protein identification software tools
    • Klimek,J. et al. (2008) The standard protein mix database: A diverse dataset to assist in the production of improved peptide and protein identification software tools. J. Proteome Res., 7, 96-103.
    • (2008) J. Proteome Res , vol.7 , pp. 96-103
    • Klimek, J.1
  • 12
    • 47249097013 scopus 로고    scopus 로고
    • Lin,Y. et al. (2008) A fragmentation event model for peptide identification by mass spectrometry. In Vingron,M. and Wong,L. (eds) Proceedings of the 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2008), Singapore, 4955 of LNBI. Springer, pp. 154-166.
    • Lin,Y. et al. (2008) A fragmentation event model for peptide identification by mass spectrometry. In Vingron,M. and Wong,L. (eds) Proceedings of the 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2008), Singapore, Vol. 4955 of LNBI. Springer, pp. 154-166.
  • 13
    • 41449095461 scopus 로고    scopus 로고
    • Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data
    • Lu,B. et al. (2008) Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data. Anal. Chem., 80, 2018-2025.
    • (2008) Anal. Chem , vol.80 , pp. 2018-2025
    • Lu, B.1
  • 14
    • 0036828724 scopus 로고    scopus 로고
    • Probability-based validation of protein identifications using a modified SEQUEST algorithm
    • MacCoss,M.J. et al. (2002) Probability-based validation of protein identifications using a modified SEQUEST algorithm. Anal. Chem., 74, 5593-5599.
    • (2002) Anal. Chem , vol.74 , pp. 5593-5599
    • MacCoss, M.J.1
  • 15
    • 34548136221 scopus 로고    scopus 로고
    • VIPER: An advanced software package to support highthroughput LC-MS peptide identification
    • Monroe,M.E. et al. (2007) VIPER: An advanced software package to support highthroughput LC-MS peptide identification. Bioinformatics 23, 2021-2023.
    • (2007) Bioinformatics , vol.23 , pp. 2021-2023
    • Monroe, M.E.1
  • 16
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii,A.I. et al. (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem., 75, 4646-4658.
    • (2003) Anal. Chem , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1
  • 17
    • 46249114017 scopus 로고    scopus 로고
    • Rapid and accurate peptide identification from tandem mass spectra
    • Park,C.Y. et al. (2008) Rapid and accurate peptide identification from tandem mass spectra. J. Proteome Res., 7, 3022-3027.
    • (2008) J. Proteome Res , vol.7 , pp. 3022-3027
    • Park, C.Y.1
  • 18
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins,D.N. et al. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20, 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1
  • 19
    • 39049088086 scopus 로고    scopus 로고
    • Investigating MS2/MS3 matching statistics: A model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence
    • Ulintz,P.J. et al. (2008) Investigating MS2/MS3 matching statistics: A model for coupling consecutive stage mass spectrometry data for increased peptide identification confidence. Mol. Cell. Proteomics, 7, 71-87.
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 71-87
    • Ulintz, P.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.