Evaluation of diversity between different Spanish chicken breeds, a tester line, and a White Leghorn population based on microsatellite markers

Poultry Science

Volumn 88, Issue 12, 2009, Pages 2518-2525

  Davila S G ^a   Gil, M G ^a   Resino Talavan P ^a   Campo, J L ^a  

^a INIA   (Spain)

Author keywords

Chicken; Genetic diversity; Microsatellite marker; Phylogenetic tree; Spanish breed

Indexed keywords

AVES; PHASIANIDAE;

EID: 70449369722     PISSN: 00325791     EISSN: 15253171     Source Type: Journal    
DOI: 10.3382/ps.2009-00347     Document Type: Article

References (38)

1. Barker, J. S. F. 1994. A global protocol for determining genetic distance among domestic livestock breeds. Pages 501-508 in Proc. 5th World Congr. Genet. Appl. Livest. Prod., Guelph, Ontario, Canada. Univ. Guelph, Guelph, Ontario, Canada.
2. Berthouly, C., B. Bed Hom, M. Tixier-Boichard, C. F. Chen, Y. P. Lee, D. Laloë, H. Legros, E. Verrier, and X. Rognon. 2008. Using molecular markers and multivariate methods to study the genetic diversity of local European and Asian chicken breeds. Anim. Genet. 39:121-129.
3. Blackburn, H. D. 2006. The National Animal Germplasm Program: Challenges and opportunities for poultry genetic resources. Poult. Sci. 85:210-215.
4. Campo, J. L. 1991. Use of the sex-linked barring (B) gene for chick sexing on an eumelanotic columbian background. Poult. Sci. 70:1469-1473.
5. Campo, J. L. 1995. Comparative yolk cholesterol content in four Spanish breeds of hens, an F2 cross, and a White Leghorn population. Poult. Sci. 74:1061-1066.
6. Campo, J. L. 1998. Conservation and genetical study of Spanish chicken breeds. Pages 155-158 in Proc. 6th World Congr. Genet. Appl. Livest. Prod., Armidale, Australia. Univ. New England, Armidale, New South Wales, Australia.
7. Campo, J. L., M. G. Gil, and S. G. Dávila. 2002. El programa de conservación de las razas españolas de gallinas. Pages 183-191 in Proc. V Congr. Soc. Esp. Recur. Genét. Anim., Madrid, Spain. Editorial Punto, Madrid, Spain.
8. Campo, J. L., and J. J. Jurado. 1982. Evaluation of multiple trait selection in strains of layers. Pages 869-874 in Proc. 2nd World Congr. Genet. Appl. Livest. Prod., Madrid, Spain. Editorial Garsi, Madrid, Spain.
9. Campo, J. L., and F. Orozco. 1982. Conservation and genetical study of Spanish chicken breeds. Pages 83-93 in Proc. 2nd World Congr. Genet. Appl. Livest. Prod., Madrid, Spain. Editorial Garsi, Madrid, Spain.
10. Campo, J. L., and F. Orozco. 1986. Genetic basis of the Melanotic Prat phenotype. Br. Poult. Sci. 27:361-367.
11. Cornuet, J. M., S. Piry, G. Luikart, A. Estoup, and M. Solignac. 1999. New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153:1989-2000.
12. Frankham, R., J. D. Ballou, and D. A. Briscoe. 2002. Introduction to Conservation Genetics. Cambridge Univ. Press, Cambridge, UK.
13. Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices, version 2.9.3. http://www2.unil.ch/ popgen/softwares/fstat.htm Accessed May 26, 2009.
14. Hammond, K. 1994. Conservation of domestic animal diversity: Global overview. Pages 423-439 in Proc. 5th World Congr. Genet. Appl. Livest. Prod., Guelph, Ontario, Canada. Univ. Guelph, Guelph, Ontario, Canada.
15. Hillel, J., M. A. M. Groenen, M. Tixier-Boichard, A. B. Korol, L. David, V. M. Kirzhner, T. Burke, A. Barre-Dirie, R. P. Crooijmans, K. Elo, M. W. Feldman, P. J. Freidlin, A. Mäki-Tanila, M. Oortwijn, P. Thomson, A. Vignal, K. Wimmers, and S. Weigend. 2003. Biodiversity of 52 chicken populations assessed by microsatellite typing of DNA pools. Genet. Sel. Evol. 35:533-557.
16. Jamieson, A., and S. C. S. Taylor. 1997. Comparison of three probability formulae for parentage exclusion. Anim. Genet. 28:397-400.
17. Kalinowski, S. T., M. L. Taper, and T. C. Marshall. 2007. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16:1099-1106.
18. Lee, E.-J., H. Mannen, M. Mizutani, and S. Tsuji. 2000. Genetic analysis of chicken lines by amplified fragment length polymorphism (AFLP). Anim. Sci. J. 71:231-238.
19. Nei, M., F. Tajima, and Y. Tateno. 1983. Accuracy of estimated phylogenetic trees from molecular data. J. Mol. Evol. 19:153-170.
20. Okumura, F., T. Shimogiri, K. Kawabe, S. Okamoto, M. Nishibori, Y. Yamamoto, and Y. Maeda. 2006. Gene constitution of SouthEast Asian native chickens, commercial chickens and jungle fowl using polymorphisms of four calpain genes. Anim. Sci. J. 77:188-195.
21. Osman, S. A.-M., M. Sekino, T. Kuwayama, K. Kinoshita, M. Nishibori, Y. Yamamoto, and M. Tsudzuki. 2006. Genetic variability and relationships of native Japanese chickens based on microsatellite DNA polymorphisms-Focusing on the natural monuments of Japan. Jpn. Poult. Sci. 43:12-22.
22. Ota, T. 1993. DISPAN: Genetic Distance and Phylogenetic Analysis. Penn. State Univ., University Park, PA.
23. Plotsky, Y., M. G. Kaiser, and S. J. Lamont. 1995. Genetic characterization of highly inbred chicken lines by two DNA methods: DNA fingerprinting and polymerase chain reaction using arbitrary primers. Anim. Genet. 26:163-170.
24. Ponsuksili, S., K. Wimmers, and P. Horst. 1996. Genetic variability in chickens using polymorphic microsatellite markers. Thai J. Agric. Sci. 29:571-580.
25. Romanov, M. N., and S. Weigend. 2001. Analysis of genetic relationships between various populations of domestic and jungle fowl using microsatellites markers. Poult. Sci. 80:1057-1063.
26. Saitou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
27. Siegel, P. B., A. Haberfeld, T. K. Mukherjee, L. C. Stallard, H. L. Marks, N. B. Anthony, and E. A. Dunnington. 1992. Jungle fowl-domestic fowl relationships: A use of DNA fingerprinting. World's Poult. Sci. J. 48:147-155.
28. Smyth, J. R., Jr. 1976. The inheritance of melanic pigmentation in the fowl. Pages 59-86 in Proc. 25th Poult. Breed. Roundtable., Kansas City, MO. Univ. Missouri, Kansas City.
29. Tadano, R., M. Sekino, M. Nishibori, and M. Tsudzuki. 2007. Microsatellite marker analysis for the genetic relationships among Japanese long-tailed chicken breeds. Poult. Sci. 86:460-469.
30. Takahashi, H., K. Nirasawa, Y. Nagamine, M. Tsuddzuki, and Y. Yamamoto. 1998. Genetic relationships among Japanese native breeds of chicken based on microsatellite DNA polymorphisms. J. Hered. 89:543-546.
31. Takezaki, N., and M. Nei. 1996. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144:389-399.
32. Tautz, D. 1989. Hypervariability of simple sequences as a general source for polymorphic DMA markers. Nucleic Acids Res. 17:6463-6471.
33. Twito, T., S. Weigend, S. Blum, Z. Granevitze, M. W. Feldman, R. Perl-Treves, U. Lavi, and J. Hillel. 2007. Biodiversity of 20 chicken breeds assessed by SNPs located in gene regions. Cytogenet. Genome Res. 117:319-326.
34. Wimmers, K., S. Ponsuksili, T. Hardge, A. Valle-Zarate, P. K. Mathur, and P. Horst. 2000. Genetic distinctness of African, Asian and South American local chickens. Anim. Genet. 31:159-165.
35. Ya-Bo, Y., W. Jin-Yu, D. M. Mekki, T. Qing-Ping, L. Hui-Fang, G. Rong, G. Qing-Lian, Z. Wen-Qi, and C. Kuan-Wei. 2006. Evaluation of genetic diversity and genetic distance between twelve Chinese indigenous chicken breeds based on microsatellite markers. Int. J. Poult. Sci. 5:550-556.
36. Yeh, F. C., R. Yang, and T. Boyle. 1999. POPGENE (version 1.31): Microsoft Windows-based freeware for population genetic analysis. Univ. Alberta, Edmonton, Canada.
37. Zhang, X., F. C. Leung, D. K. Chan, G. Yang, and C. Wu. 2002. Genetic diversity of Chinese native chicken breeds based on protein polymorphism, randomly amplified polymorphic DNA, and microsatellite polymorphism. Poult. Sci. 81:1463-1472.
38. Zhou, H., and S. J. Lamont. 1999. Genetic characterization of biodiversity in highly inbred chicken lines by microsatellite markers. Anim. Genet. 30:256-264.