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Volumn 70, Issue 3, 2009, Pages 356-366

Links between methanotroph community composition and CH4 oxidation in a pine forest soil

Author keywords

Methane mono oxygenase; Methane oxidizing bacteria; Methanotroph; Nucleic acid; Phospholipid fatty acid; Stable isotope probing

Indexed keywords

CARBON; FATTY ACID; METHANE MONOOXYGENASE; STABLE ISOTOPE;

EID: 70449123858     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2009.00751.x     Document Type: Article
Times cited : (33)

References (55)
  • 2
    • 0034468710 scopus 로고    scopus 로고
    • Molecular characterization of methanotrophic isolates from freshwater lake sediment
    • Auman AJ, Stolyar S, Costello AM Lidstrom ME (2000) Molecular characterization of methanotrophic isolates from freshwater lake sediment. Appl Environ Microb 66 : 5259 5266.
    • (2000) Appl Environ Microb , vol.66 , pp. 5259-5266
    • Auman, A.J.1    Stolyar, S.2    Costello, A.M.3    Lidstrom, M.E.4
  • 3
    • 48249112161 scopus 로고    scopus 로고
    • Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SCZ
    • Baani M Liesack W (2008) Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SCZ. P Natl Acad Sci USA 105 : 10203 10208.
    • (2008) P Natl Acad Sci USA , vol.105 , pp. 10203-10208
    • Baani, M.1    Liesack, W.2
  • 4
    • 0347723718 scopus 로고    scopus 로고
    • Methane biogeochemistry and methanogen communities in two northern peatlands, New York State
    • Basiliko N, Yavitt JB, Dees PM Merkel SM (2003) Methane biogeochemistry and methanogen communities in two northern peatlands, New York State. Geomicrobiol J 20 : 563 577.
    • (2003) Geomicrobiol J , vol.20 , pp. 563-577
    • Basiliko, N.1    Yavitt, J.B.2    Dees, P.M.3    Merkel, S.M.4
  • 5
    • 16544362743 scopus 로고    scopus 로고
    • Roles of moss species and habitats in methane consumption potential in a northern peatland
    • Basiliko N, Knowles R Moore TR (2004) Roles of moss species and habitats in methane consumption potential in a northern peatland. Wetlands 24 : 178 185.
    • (2004) Wetlands , vol.24 , pp. 178-185
    • Basiliko, N.1    Knowles, R.2    Moore, T.R.3
  • 8
    • 0035458352 scopus 로고    scopus 로고
    • Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils
    • Bourne DG, McDonald IR Murrell JC (2001) Comparison of pmoA PCR primer sets as tools for investigating methanotroph diversity in three Danish soils. Appl Environ Microb 67 : 3802 3809.
    • (2001) Appl Environ Microb , vol.67 , pp. 3802-3809
    • Bourne, D.G.1    McDonald, I.R.2    Murrell, J.C.3
  • 10
    • 34249684326 scopus 로고    scopus 로고
    • Stable isotope probing with (15)N achieved by disentangling the effects of genome G+C content and isotope enrichment on DNA density
    • Buckley DH, Huangyutitham V, Hsu SF Nelson TA (2007) Stable isotope probing with (15)N achieved by disentangling the effects of genome G+C content and isotope enrichment on DNA density. Appl Environ Microb 73 : 3189 3195.
    • (2007) Appl Environ Microb , vol.73 , pp. 3189-3195
    • Buckley, D.H.1    Huangyutitham, V.2    Hsu, S.F.3    Nelson, T.A.4
  • 11
    • 0034636417 scopus 로고    scopus 로고
    • Detection and classification of atmospheric methane oxidizing bacteria in soil
    • Bull ID, Parekh NR, Hall GH, Ineson P Evershed RP (2000) Detection and classification of atmospheric methane oxidizing bacteria in soil. Nature 405 : 175 178.
    • (2000) Nature , vol.405 , pp. 175-178
    • Bull, I.D.1    Parekh, N.R.2    Hall, G.H.3    Ineson, P.4    Evershed, R.P.5
  • 12
    • 17644362722 scopus 로고    scopus 로고
    • 13C labelling of bacterial lipids in the characterisation of ambient methane-oxidising bacteria in soils
    • 13C labelling of bacterial lipids in the characterisation of ambient methane-oxidising bacteria in soils. Org Geochem 36 : 769 778.
    • (2005) Org Geochem , vol.36 , pp. 769-778
    • Crossman, Z.M.1    Ineson, P.2    Evershed, R.P.3
  • 13
    • 33646100764 scopus 로고    scopus 로고
    • Investigation of the effect of ammonium sulfate on populations of ambient methane oxidising bacteria by C-13-labelling and GC/C/IRMS analysis of phospholipid fatty acids
    • Crossman ZM, Wang ZP, Ineson P Evershed RP (2006) Investigation of the effect of ammonium sulfate on populations of ambient methane oxidising bacteria by C-13-labelling and GC/C/IRMS analysis of phospholipid fatty acids. Soil Biol Biochem 38 : 983 990.
    • (2006) Soil Biol Biochem , vol.38 , pp. 983-990
    • Crossman, Z.M.1    Wang, Z.P.2    Ineson, P.3    Evershed, R.P.4
  • 14
    • 19544364233 scopus 로고    scopus 로고
    • Methanotrophic bacteria of acidic Sphagnum peat bogs
    • Dedysh SN (2002) Methanotrophic bacteria of acidic Sphagnum peat bogs. Microbiology 71 : 638 650.
    • (2002) Microbiology , vol.71 , pp. 638-650
    • Dedysh, S.N.1
  • 16
    • 0036135121 scopus 로고    scopus 로고
    • A novel pmoA lineage represented by the acidophilic methanotrophic bacterium Methylocapsa acidophila B2
    • Dedysh SN, Horz HP, Dunfield PF Liesack W (2001) A novel pmoA lineage represented by the acidophilic methanotrophic bacterium Methylocapsa acidophila B2. Arch Microbiol 177 : 117 121.
    • (2001) Arch Microbiol , vol.177 , pp. 117-121
    • Dedysh, S.N.1    Horz, H.P.2    Dunfield, P.F.3    Liesack, W.4
  • 17
    • 21144452445 scopus 로고    scopus 로고
    • Methylocella species are facultatively methanotrophic
    • Dedysh SN, Knief C Dunfield PF (2005) Methylocella species are facultatively methanotrophic. J Bacteriol 187 : 4665 4670.
    • (2005) J Bacteriol , vol.187 , pp. 4665-4670
    • Dedysh, S.N.1    Knief, C.2    Dunfield, P.F.3
  • 19
    • 0022456145 scopus 로고
    • Phospholipid ester-linked fatty-acid biomarkers of acetate-oxidizing sulfate-reducers and other sulfide-forming bacteria
    • Dowling NJE, Widdel F White DC (1986) Phospholipid ester-linked fatty-acid biomarkers of acetate-oxidizing sulfate-reducers and other sulfide-forming bacteria. J Gen Microbiol 132 : 1815 1825.
    • (1986) J Gen Microbiol , vol.132 , pp. 1815-1825
    • Dowling, N.J.E.1    Widdel, F.2    White, D.C.3
  • 20
    • 19144372182 scopus 로고    scopus 로고
    • Stable isotope probing - Linking microbial identity to function
    • Dumont MG Murrell JC (2005) Stable isotope probing - linking microbial identity to function. Nat Rev Microbiol 3 : 499 504.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 499-504
    • Dumont, M.G.1    Murrell, J.C.2
  • 21
    • 0032987440 scopus 로고    scopus 로고
    • High-affinity methane oxidation by a soil enrichment culture containing a type II methanotroph
    • Dunfield PF, Liesack W, Henckel T, Knowles R Conrad R (1999) High-affinity methane oxidation by a soil enrichment culture containing a type II methanotroph. Appl Environ Microb 65 : 1009 1014.
    • (1999) Appl Environ Microb , vol.65 , pp. 1009-1014
    • Dunfield, P.F.1    Liesack, W.2    Henckel, T.3    Knowles, R.4    Conrad, R.5
  • 22
    • 36849030274 scopus 로고    scopus 로고
    • Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
    • Dunfield PF, Yuryev A, Senin P et al 2007) Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 450 : 879 882.
    • (2007) Nature , vol.450 , pp. 879-882
    • Dunfield, P.F.1    Yuryev, A.2    Senin, P.3    Al, E.4
  • 23
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny inference package (version 3.2)
    • Felsenstein J (1989) PHYLIP - phylogeny inference package (version 3.2). Cladistics 5 : 164 166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 24
    • 0025889744 scopus 로고
    • Microbial biomass measured as total lipid phosphate in soils of different organic content
    • Frostegård A, Tunlid A Bååth E (1991) Microbial biomass measured as total lipid phosphate in soils of different organic content. J Microbiol Meth 14 : 151 163.
    • (1991) J Microbiol Meth , vol.14 , pp. 151-163
    • Frostegård, A.1    Tunlid, A.2    Bååth, E.3
  • 25
    • 25144488994 scopus 로고    scopus 로고
    • Carbon dioxide and methane production potentials of peats from natural, harvested and restored sites, eastern Québec, Canada
    • Glatzel SN, Basiliko N Moore TR (2004) Carbon dioxide and methane production potentials of peats from natural, harvested and restored sites, eastern Québec, Canada. Wetlands 24 : 261 267.
    • (2004) Wetlands , vol.24 , pp. 261-267
    • Glatzel, S.N.1    Basiliko, N.2    Moore, T.R.3
  • 26
    • 0034468557 scopus 로고    scopus 로고
    • Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA and rRNA-based microbial community composition
    • Griffiths RI, Whiteley AS, O'Donnell AG Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA and rRNA-based microbial community composition. Appl Environ Microb 66 : 5488 5491.
    • (2000) Appl Environ Microb , vol.66 , pp. 5488-5491
    • Griffiths, R.I.1    Whiteley, A.S.2    O'Donnell, A.G.3    Bailey, M.J.4
  • 27
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41 : 95 98.
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 30
    • 0028791540 scopus 로고
    • Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related
    • Holmes AJ, Costello A, Lidstrom ME Murrell JC (1995) Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol Lett 132 : 203 208.
    • (1995) FEMS Microbiol Lett , vol.132 , pp. 203-208
    • Holmes, A.J.1    Costello, A.2    Lidstrom, M.E.3    Murrell, J.C.4
  • 34
    • 23944469356 scopus 로고    scopus 로고
    • Response and adaptation of methanotrophic bacteria to low methane concentrations
    • Knief C Dunfield PF (2005) Response and adaptation of methanotrophic bacteria to low methane concentrations. Environ Microbiol 7 : 1307 1317.
    • (2005) Environ Microbiol , vol.7 , pp. 1307-1317
    • Knief, C.1    Dunfield, P.F.2
  • 35
    • 0242405670 scopus 로고    scopus 로고
    • Diversity and activity of methanotrophic bacteria in different upland soils
    • Knief C, Lipski A Dunfield PF (2003) Diversity and activity of methanotrophic bacteria in different upland soils. Appl Environ Microb 69 : 6703 6714.
    • (2003) Appl Environ Microb , vol.69 , pp. 6703-6714
    • Knief, C.1    Lipski, A.2    Dunfield, P.F.3
  • 36
    • 33144468700 scopus 로고    scopus 로고
    • The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration
    • Knief C, Kolb S, Bodelier PLE, Lipski A Dunfield PF (2006) The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration. Environ Microbiol 8 : 321 333.
    • (2006) Environ Microbiol , vol.8 , pp. 321-333
    • Knief, C.1    Kolb, S.2    Bodelier, P.L.E.3    Lipski, A.4    Dunfield, P.F.5
  • 37
    • 0038221311 scopus 로고    scopus 로고
    • Quantitative detection of methanotrophs in soil by novel pmoA targeted real-time PCR assays
    • Kolb S, Knief C, Stubner S Conrad R (2003) Quantitative detection of methanotrophs in soil by novel pmoA targeted real-time PCR assays. Appl Environ Microb 69 : 2423 2429.
    • (2003) Appl Environ Microb , vol.69 , pp. 2423-2429
    • Kolb, S.1    Knief, C.2    Stubner, S.3    Conrad, R.4
  • 38
    • 0842266321 scopus 로고    scopus 로고
    • Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil
    • Lueders T, Wagner B, Claus P Friedrich MW (2004) Stable isotope probing of rRNA and DNA reveals a dynamic methylotroph community and trophic interactions with fungi and protozoa in oxic rice field soil. Environ Microbiol 6 : 60 72.
    • (2004) Environ Microbiol , vol.6 , pp. 60-72
    • Lueders, T.1    Wagner, B.2    Claus, P.3    Friedrich, M.W.4
  • 39
    • 17844366280 scopus 로고    scopus 로고
    • Identifying microorganisms responsible for ecologically significant biogeochemical processes
    • Madsen EL (2005) Identifying microorganisms responsible for ecologically significant biogeochemical processes. Nat Rev Microbiol 3 : 439 446.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 439-446
    • Madsen, E.L.1
  • 40
    • 33745144975 scopus 로고    scopus 로고
    • Estimating high-affinity methanotrophic bacterial biomass, growth, and turnover in soil by phospholipid fatty acid C-13 labeling
    • Maxfield PJ, Hornibrook ERC Evershed RP (2006) Estimating high-affinity methanotrophic bacterial biomass, growth, and turnover in soil by phospholipid fatty acid C-13 labeling. Appl Environ Microb 72 : 3901 3907.
    • (2006) Appl Environ Microb , vol.72 , pp. 3901-3907
    • Maxfield, P.J.1    Hornibrook, E.R.C.2    Evershed, R.P.3
  • 41
    • 44849118465 scopus 로고    scopus 로고
    • Acute impact of agriculture on high-affinity methanotrophic bacterial populations
    • Maxfield PJ, Hornibrook ERC Evershed RP (2008) Acute impact of agriculture on high-affinity methanotrophic bacterial populations. Environ Microbiol 7 : 1917 1924.
    • (2008) Environ Microbiol , vol.7 , pp. 1917-1924
    • Maxfield, P.J.1    Hornibrook, E.R.C.2    Evershed, R.P.3
  • 43
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal ED Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microb 59 : 695 700.
    • (1993) Appl Environ Microb , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.D.2    Uitterlinden, A.G.3
  • 44
    • 34248137874 scopus 로고    scopus 로고
    • Methodological considerations for the use of stable isotope probing in microbial ecology
    • Neufeld JD, Dumont MG, Vohra J Murrell JC (2006) Methodological considerations for the use of stable isotope probing in microbial ecology. Microb Ecol 53 : 435 442.
    • (2006) Microb Ecol , vol.53 , pp. 435-442
    • Neufeld, J.D.1    Dumont, M.G.2    Vohra, J.3    Murrell, J.C.4
  • 46
    • 40249115825 scopus 로고    scopus 로고
    • Marine methylotrophs revealed by stable-isotope probing, whole genome amplification and metagenomics
    • Neufeld JD, Chen Y, Dumont MG Murrell JC (2008) Marine methylotrophs revealed by stable-isotope probing, whole genome amplification and metagenomics. Environ Microbiol 74 : 1526 1535.
    • (2008) Environ Microbiol , vol.74 , pp. 1526-1535
    • Neufeld, J.D.1    Chen, Y.2    Dumont, M.G.3    Murrell, J.C.4
  • 47
    • 33745844508 scopus 로고    scopus 로고
    • Distribution of methanotrophs in managed and highly disturbed watersheds
    • Ogram A, Castro H, Stanley E, Chen W Prenger J (2006) Distribution of methanotrophs in managed and highly disturbed watersheds. Ecol Indic 6 : 631 643.
    • (2006) Ecol Indic , vol.6 , pp. 631-643
    • Ogram, A.1    Castro, H.2    Stanley, E.3    Chen, W.4    Prenger, J.5
  • 49
    • 33744806666 scopus 로고    scopus 로고
    • Choice of methods for soil microbial community analysis: PLFA maximizes power compared to CLPP and PCR-based approaches
    • Ramsey PW, Rillig MC, Feris KP, Holben WE Gannon JE (2006) Choice of methods for soil microbial community analysis: PLFA maximizes power compared to CLPP and PCR-based approaches. Pedobiologia 50 : 275 280.
    • (2006) Pedobiologia , vol.50 , pp. 275-280
    • Ramsey, P.W.1    Rillig, M.C.2    Feris, K.P.3    Holben, W.E.4    Gannon, J.E.5
  • 50
    • 5644294575 scopus 로고    scopus 로고
    • Methane oxidation in temperate soils: Effects of inorganic N
    • Reay DS Nedwell DB (2004) Methane oxidation in temperate soils: effects of inorganic N. Soil Biol Biochem 36 : 2059 2065.
    • (2004) Soil Biol Biochem , vol.36 , pp. 2059-2065
    • Reay, D.S.1    Nedwell, D.B.2
  • 51
    • 32044448694 scopus 로고    scopus 로고
    • First genome data from uncultured upland soil cluster alpha methanotrophs provide further evidence for a close phylogenetic relationship to Methylocapsa acidiphila B2 and for high-affinity methanotrophy involving particulate methane monooxygenase
    • Ricke P, Kube M, Nakagawa S, Erkel C, Reinhardt R Liesack W (2005) First genome data from uncultured upland soil cluster alpha methanotrophs provide further evidence for a close phylogenetic relationship to Methylocapsa acidiphila B2 and for high-affinity methanotrophy involving particulate methane monooxygenase. Appl Environ Microb 71 : 7472 7482.
    • (2005) Appl Environ Microb , vol.71 , pp. 7472-7482
    • Ricke, P.1    Kube, M.2    Nakagawa, S.3    Erkel, C.4    Reinhardt, R.5    Liesack, W.6
  • 54
    • 70449098216 scopus 로고    scopus 로고
    • Weather Network. Statistics: Prince George, BC, Canada (1961-1990). Available at. (accessed 22 January 2008).
    • Weather Network. Statistics: Prince George, BC, Canada (1961-1990). Available at (accessed 22 January 2008).
  • 55
    • 0032946688 scopus 로고    scopus 로고
    • Fatty acid patterns of phospholipids and lipopolysaccharides in the characterization of microbial communities in soil: A review
    • Zelles L (1999) Fatty acid patterns of phospholipids and lipopolysaccharides in the characterization of microbial communities in soil: a review. Biol Fertil Soils 29 : 111 129.
    • (1999) Biol Fertil Soils , vol.29 , pp. 111-129
    • Zelles, L.1


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