Development of biomarkers based on diet-dependent metabolic serotypes: Concerns and approaches for cohort and gender issues in serum metabolome studies

OMICS A Journal of Integrative Biology

Volumn 8, Issue 3, 2004, Pages 209-220

  Paolucci, Ugo ^a   Vigneau Callahan, Karen E ^b   Shi, Honglian ^a   Matson, Wayne R ^b   Kristal, Bruce S ^a,c  

^a BURKE MEDICAL RESEARCH INSTITUTE   (United States)

^b ESA Biosciences Inc   (United States)

^c WEILL CORNELL MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER;

ANIMAL EXPERIMENT; ARTICLE; BLOOD LEVEL; CANCER RISK; DIET RESTRICTION; DISEASE PREDISPOSITION; ENVIRONMENTAL FACTOR; FEMALE; GENDER; HYDROPHILICITY; MALE; METABOLISM; NONHUMAN; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; RAT; SEROTYPE; STATISTICAL ANALYSIS;

ANIMALS; BIOLOGICAL MARKERS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; COHORT STUDIES; DIET; ELECTROCHEMISTRY; FEMALE; MALE; METABOLISM; RATS; RATS, INBRED F344; SEX FACTORS;

ANIMALIA;

EID: 7044249739     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/omi.2004.8.209     Document Type: Article

References (23)

1. ERIKSSON, L., JOHANSSON E., KETTANEH-WOLD, N., et al. (2001). Multi- and Megavariate Analysis (Umea, Sweden, Umetrics).
2. FERNANDES, G., CHANDRASEKAR, B., TROYER, D.A., et al. (1995). Dietary lipids and calorie restriction affect mammary tumor incidence and gene expression in mouse mammary tumor virus/v-Ha-ras transgenic mice. Proc Natl Acad Sci USA 92, 6494-6498.
3. IWASAKI, K., GLEISTER, C.A., MASORO, E.J., et al. (1988). Influence of the restriction of individual dietary components on longevity and age-related disease of Fischer Rats: the fat component and the mineral component. J Gerontol 43, B13-B21.
4. KENNEDY, R.L., LEE, Y., VAN ROY, B., et al. (1998). Solving Data Mining Problems Through Pattern Recognition (Upper Saddle River, NJ, Prentice Hall).
5. KLURFELD, D.M., WEBER, M.M., and KRITCHEVSKY, D. (1987). Inhibition of chemically induced mammary and colon tumor promotion by caloric restriction in rats fed increased dietary fat. Cancer Res 47, 2759-2762.
6. KRISTAL, B.S., VIGNEAU-CALLAHAN, K.E., and MATSON, W.R. (1998). Simultaneous analysis of the majority of low-molecular-weight, redox-active compounds from mitochondria. Anal Biochem 263, 18-25.
7. KRISTAL, B.S., VIGNEAU-CALLAHAN, K.E., and MATSON, W.R. (2002): Simultaneous analysis of multiple redox-active metabolites from biological matrices. In Methods in Molecular Biology, Vol. 186: Oxidative Stress Biomarkers and Antioxidant Protocols. (Totowa, Humana Press), pp. 185-194.
8. KRISTAL, B.S., and YU, B.P. (1994). Aging and its modulation by dietary restriction. In Modulation of Aging Processes by Dietary Restriction, 1st ed. B.P. Yu, eds. (Boca Raton, FL, CRC Press), pp. 1-36.
9. KRITCHEVSKY, D., WEBER, M.M., and KLURFELD, D.M. (1984). Dietary fat versus caloric content in initiation and promotion of 7,12-dimethylbenz(a) anthracene-induced mammary tumorigenesis in rats. Cancer Res 44, 3174-3177.
10. MAEDA, H., GLEISER, C.A., MASORO, E.J., et al. (1985). Nutritional influences on aging of Fischer 344 rats: II. Pathology. J Gerontol 40, 671-688.
11. MANLY, B.F.J. (2000). Multivariate Statistical Methods (Boca Raton, FL, CRC Press).
12. MATSON, W.R., GAMACHE, P.H., BEAL, M.F., et al. (1987). EC array sensor concepts and data. Life Sci 41, 905-908.
13. MATSON, W.R., LANGIALS, P., VOLICER, L., et al. (1984). n-electrode three dimensional liquid chromatography with electrochemical detection for determination of neurotransmitters. Clin Chem 30, 1477-1488.
14. PAOLUCCI, U., VIGNEAU-CALLAHAN, K.E., SHI, H., et al. (2004). Development of biomarkers based on diet-dependent metabolic serotypes: characteristics of component-based models of metabolic serotypes. OMICS 8, 221-238.
15. SHI, H., VIGNEAU-CALLAHAN, K.E., MATSON, W.R., et al. (2002a). Attention to relative response across sequential electrodes improves quantitation of coulometric array. Anal Biochem 302, 239-245.
16. SHI, H., VIGNEAU-CALLAHAN, K.E., SHESTOPALOV, A.I., et al. (2002b). Characterization of diet-dependent metabolic serotypes: primary validation of male and female serotypes in independent cohorts of rats. J Nutr 132, 1039-1046.
17. SHI, H., VIGNEAU-CALLAHAN, K.E., SHESTOPALOV, A.I., et al. (2002c). Characterization of diet-dependent metabolic serotypes: proof of principle in female and male rats. J Nutr 132, 1031-1038.
18. SHI, H., PAOLUCCI, U., VIGNEAU-CALLAHAN, K.E., et al. (2004). Development of biomarkers based on diet-dependent metabolic serotypes: practical issues in development of expert system-based classification models in metabolomic studies. OMICS 8, 197-208.
19. SHIMOKAWA, I., HIGAMI, Y., YU, B.P., et al. (1996). Influence of dietary components on occurrence of and mortality due to neoplasms in male F344 rats. Aging Milano 8, 254-262.
20. VIGNEAU-CALLAHAN, K.E., SHESTOPALOV, A.I., MILBURY, P.E., et al. (2001). Characterization of diet-dependent metabolic serotypes: analytical and biological variability issues in rats. J Nutr 924S-932S.
21. WEINDRUCH, R., and WALFORD, R. (1988). The Retardation of Aging and Disease by Dietary Restriction (St. Louis, Charles C. Thomas).
22. WILLETT, W.C., DIETZ, W.H., and COLDITZ, G.A. (1999). Guidelines for healthy weight. N Engl J Med 341, 427-434.
23. YU, B.P. (1994). Modulation of Aging Processes by Dietary Restriction (Boca Raton, FL, CRC Press).