Genetic markers associated with resistance to infectious hematopoietic necrosis in rainbow and steelhead trout (Oncorhynchus mykiss) backcrosses

Aquaculture

Volumn 241, Issue 1-4, 2004, Pages 93-115

  Rodriguez, M Fernanda ^a,b,d   LaPatra, Scott ^c   Williams, Scott ^c   Famula, Thomas ^a   May, Bernie ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c Research Division   (United States)

^d Natl Ctr Cool Cold Water Aquacult   (United States)

Author keywords

IHNV; Linkage map; Oncorhynchus mykiss; QTL; Rainbow trout; Steelhead

Indexed keywords

AQUACULTURE;

INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS; ONCORHYNCHUS; ONCORHYNCHUS MYKISS; SALMONIDAE;

EID: 7044220724     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2004.08.003     Document Type: Article

References (35)

1. F.W. Allendorf, and R.G. Danzmann Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologous in rainbow trout Genetics 145 1997 1083 1092
2. M. Cairney, J.B. Taggart, and B. Hoyheim Characterization of microsatellite and minisatellite loci in Atlantic salmon (Salmo salar L.) and cross-species amplification in other salmonids Mol. Ecol. 9 12 2000 2175 2178
3. Cordes, J.F., Blumberg, M.A., Gall, G.A.E., May, B., 2001. Genetic status of California golden trout populations in the headwaters of Golden Trout Creek. Report to the California Department of Fish and Game Threatened Trout Committee. September 2001, 34 pp.
4. J.J. Doyle, and J.L. Doyle A rapid DNA isolation procedure for small quantities of fresh leaf tipsier Phytil. Bull. 19 1987 11 15
5. P.M. Grewe, C.C. Krueger, C.F. Aquadro, E. Bermingham, H.L. Kincaid, and B. May Mitochondrial DNA variation among lake trout (Salvelinus namaycush) strains stocked into Lake Ontario Can. J. Fish. Aquat. Sci. 50 1993 2397 2403
6. K.R. Johnson, J.E. Wright, and B. May Linkage relationship reflecting ancestral tetraploidy in salmonid fish Genetics 116 1987 579 591
7. Khoo, S.K., 2000. Identification of quantitative loci (QTL) associated with infectious hematopoietic necrosis (IHN) virus resistance in rainbow trout (Oncorhynchus mykiss), using microsatellites and AFLP genetic markers. Ph.D. dissertation. Graduate School of the Tokyo University of Fisheries.
8. R. Lande, and R. Thompson Efficiency of marker-assisted selection in the improvement of quantitative traits Genetics 124 1990 743 756
9. E.S. Lander, and D. Botstein Mapping mendelian factors underlying quantitative traits using RFLP linkage map Genetics 121 1989 185 199
10. E.S. Lander, P. Green, J. Abrahamson, A. Barlow, M.J. Daly, S.E. Lincoln, and L. Newburg MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations Genomics 1 2 1987 174 181
11. S.E. LaPatra, K.A. Lauda, and G.R. Jones Antigenic variants of infectious hematopoietic necrosis virus and implications for vaccine development Dis. Aquat. Org. 20 1994 119 126
12. S.E. LaPatra, W.N. Batts, K. Overturf, G.R. Jones, W.D. Shewmaker, and J.R. Winton Negligible risk associated with the movement of processed rainbow trout from an infectious hematopoietic necrosis virus (IHNV) endemic area J. Fish Dis. 24 7 2001 399 408
13. B. May, M. Stoneking, and J.E. Wright Jr. Joint segregation of biochemical loci in Salmonidae: II. Linkage associations from a hybridized Salvelinus genome (S. namaycush x S. fontinalis) Genetics 95 3 1980 707
14. B. May, J.E. Wright Jr., and K.R. Johnson Joint segregation of biochemical loci in Salmonidae: III. Linkage associations in Salmonidae including data from rainbow trout (Salmo gairdneri) Biochem. Genet. 20 1â€"2 1982 29 40
15. S.K. McConnell, P. O'Reilly, L. Hamilton, J.M. Wright, and P. Bentzen Polymorphic microsatellite loci from Atlantic salmon (Salmo salari): genetic differentiation of North American and European populations Can. J. Fish. Aquat. Sci. 52 1995 1863 1872
16. D.B. Morris, K.R. Richard, and J.M. Wright Microsatellites from rainbow trout (Oncorhynchus mykiss) and their use for genetic study of salmonids Can. J. Fish. Aquat. Sci. 53 1996 120 126
17. R.J. Nelson, and T.D. Beacham Isolation and cross species amplification of microsatellite loci useful for study of Pacific salmon Anim. Genet., Jun 30 3 1999 228 229
18. K.M. Nichols, W.P. Young, R.G. Danzmann, B.D. Robison, C. Rexroad, M. Noakes, R.B. Phillips, P. Bentzen, I. Spies, K. Knudsen, F.W. Allendorf, B.M. Cunningham, J. Brunelli, H. Zhang, S. Ristow, R. Drew, K.H. Brown, P.A. Wheeler, and G.H. Thorgaard A consolidated linkage map for rainbow trout (Oncorhyncus mykiss) Anim. Genet. 34 2003 102 115
19. J.B. Olsen, P. Bentzen, and J.E. Seeb Characterization of seven microsatellite loci derived from pink salmon Mol. Ecol. 7 8 1998 1087 1089
20. Y. Palti, J.E. Parsons, and G.H. Thogaard Identification of candidate DNA markers associated with IHN virus resistance in backcrosses of rainbow (Oncorhynchus mykiss) and cutthroat trout (O. clarki) Aquaculture 173 1999 81 94
21. Y. Palti, K.M. Nichols, K.I. Waller, J.E. Parsons, and G.H. Thogaard Association between DNA polymorphisms tightly linked to MHC class II genes and IHN virus resistance in backcrosses of rainbow and cutthroat trout Aquaculture 194 2001 283 289
22. C.E. Rexroad III, R.L. Coleman, A.L. Gustafson, W.K. Hershberger, and J. Killefer Development of rainbow trout microsatellite markers from repeat enriched libraries Mar. Biotechnol. 4 1 2002 12 16
23. C.E. Rexroad III, R.L. Coleman, W.K. Hershberger, and J. Killefer Thirty-eight polymorphic microsatellite markers for mapping in rainbow trout J. Anim. Sci. 80 2 2002 541 542
24. J.A. Rodzen, J.A. Agresti, G. Tranah, and B. May Agarose overlays allow simplified staining of polyacrylamide gels BioTechniques 25 4 1998 584
25. M.A. Saghai-Maroof, K.M. Soliman, R.A. Jorgensen, and R.W. Allard Ribosomal DNA spacer-length polymorphisms in barley, Mendelian inheritance, chromosomal location, and population dynamics Proc. Natl. Acad. Sci. U. S. A. 81 1984 8014 8018
26. T. Sakamoto, N. Okamoto, and Y. Ikeda Dinucleotide repeat polymorphism of rainbow trout, FGT3 J. Anim. Sci. 72 1994 2766
27. T. Sakamoto, N. Okamoto, Y. Ikeda, Y. Nakamura, and T. Sato Dinucleotide-repeat polymorphism in DNA of rainbow trout and its application in fisheries science J. Fish Biol. 44 1994 1093 1096
28. T. Sakamoto, R.G. Danzmann, K. Gharbi, P. Howard, A. Ozaki, S.K. Khoo, R.A. Woram, N. Okamoto, M.M. Ferguson, L. Holm, R. Guyomard, and B. Hoyheim A microsatellite-based map for rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates Genetics 155 2000 1331 1345
29. K.T. Scribner, J.R. Gust, and R.L. Fields Isolation and characterization of novel salmon microsatellite loci: cross-species amplification and population genetic applications Can. J. Fish. Aquat. Sci. 53 1996 833 841
30. M.P. Small, T.D. Beacham, R.E. Withler, and R.J. Nelson Discriminating coho salmon (Oncorhynchus kisutch) populations within the Fraser River, British Columbia, using microsatellite DNA markers Mol. Ecol. 7 1998 141 155
31. P. Vos, R. Hodgers, M. Bleeker, M. Reijans, T. van de Lee, M. Homes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau AFLP, a new technique for DNA fingerprinting Nucleic Acids Res. 23 1995 4407 4414
32. K.E. Williamson, J.F. Cordes, and B. May Charaterization of microsatellite loci in chinook salmon (Oncorhynchus tshawytscha) and cross-species amplification in other salmonids Mol. Ecol. Notes 2 2002 17 19
33. J.E. Wright Jr., B. May, M. Stoneking, and G.M. Lee Pseudolinkage of the duplicate loci for supernatant aspartate aminotransferase in brook trout, Salvelinus fontinalis J. Heredity 71 4 1980 223 228
34. J.E. Wright Jr., K. Johnson, A. Hollister, and B. May Meiotic models to explain classical linkage, pseudolinkage, and chromosome pairing in tetraploid derivative salmonids genomes M.C. Rattazzi J.G. Scandalios G.S. Whitt Isozymes: Current Topics in Biological and Medical Research 1983 Alan R. Liss New York 239 260
35. W.P. Young, P.A. Wheeler, V.H. Coryell, P. Keim, and G.H. Thorgaard A detailed linkage map of rainbow trout produced using double haploids Genetics 148 1998 839 850