Specific Arrangement of α-Helical Coiled Coils in the Core Domain of the Bacterial Flagellar Hook for the Universal Joint Function

Structure

Volumn 17, Issue 11, 2009, Pages 1485-1493

  Fujii, Takashi ^a,b   Kato, Takayuki ^a,b   Namba, Keiichi ^a,b  

^a JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

MICROBIO; PROTEINS

Indexed keywords

CYTOSKELETON PROTEIN; FLAGELLIN; POLYPEPTIDE; PROTEIN FLGE; UNCLASSIFIED DRUG;

ALPHA HELIX; ARTICLE; BACTERIAL FLAGELLUM; CONTROLLED STUDY; CRYOELECTRON MICROSCOPY; CYTOSKELETON; IMAGE ANALYSIS; IMAGE RECONSTRUCTION; MICROFILAMENT; MOLECULAR DYNAMICS; MOLECULAR IMAGING; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; STRUCTURE ACTIVITY RELATION; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING;

BACTERIAL PROTEINS; CRYOELECTRON MICROSCOPY; FLAGELLA; MODELS, MOLECULAR; MOLECULAR MOTOR PROTEINS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY;

BACTERIA (MICROORGANISMS);

EID: 70350719099     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2009.08.017     Document Type: Article

References (42)

1. Asakura S. Polymerization of flagellin and polymorphism of flagella. Adv. Biophys. 1 (1970) 99-155
2. Aizawa S.-I., Dean G.E., Jones C.J., Macnab R.M., and Yamaguchi S. Purification and characterization of the flagellar hook-basal body complex of Salmonella typhimurium. J. Bacteriol. 161 (1985) 836-849
3. Berg H.C. The rotary motor of bacterial flagella. Annu. Rev. Biochem. 72 (2003) 19-54
4. Berg H.C., and Anderson R.A. Bacteria swim by rotating their flagellar filaments. Nature 245 (1973) 380-382
5. Calladine C.R. Construction of bacterial flagella. Nature 255 (1975) 121-124
6. Calladine C.R. Change of waveform in bacterial flagella: the role of mechanics at the molecular level. J. Mol. Biol. 118 (1978) 457-479
7. Chen J.Z., Fürst J., Chapman M.S., and Grigorieff N. Low resolution structure refinement in electron microscopy. J. Struct. Biol. 144 (2003) 144-151
8. DePamphilis M.L., and Adler J. Purification of intact flagella from Escherichia coli and Bacillus subtilis. J. Bacteriol. 105 (1971) 376-383
9. DePamphilis M.L., and Adler J. Fine structure and isolation of the hook-basal body complex of flagella from Escherichia coli and Bacillus subtilis. J. Bacteriol. 105 (1971) 384-395
10. Egelman E.H. A robust algorithm for the reconstruction of helical filaments using single-particle methods. Ultramicroscopy 85 (2000) 225-234
11. Frank J., Radermacher M., Penczek P., Zhu J., Li Y., Ladjadj M., and Leith A. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 116 (1996) 190-199
12. Fujiyoshi Y., Mizusaki T., Morikawa K., Yamagishi H., Aoki Y., Kihara H., and Harada Y. Development of a superfluid helium stage for high-resolution electron microscopy. Ultramicroscopy 38 (1991) 241-251
13. Hirano T., Yamaguchi S., Oosawa K., and Aizawa S.-I. Roles of FliK and FlhB in the determination of flagellar hook length in Salmonella typhimurium. J. Bacteriol. 176 (1994) 5439-5449
14. Homma M., DeRosier D.J., and Macnab R.M. Flagellar hook and hook-associated proteins of Salmonella typhimurium and their relationship to other axial components of the flagellum. J. Mol. Biol. 213 (1990) 819-832
15. Hoshikawa H., and Kamiya R. Elastic properties of bacterial flagellar filaments II. Determination of the modulus of rigidity. Biophys. Chem. 22 (1985) 159-166
16. Kagawa H., Aizawa S.-I., and Asakura S. Transformations in isolated polyhooks. J. Mol. Biol. 129 (1979) 333-336
17. Kamiya R., Asakura S., Wakabayashi K., and Namba K. Transition of bacterial flagella from helical to straight forms with different subunit arrangements. J. Mol. Biol. 131 (1979) 725-742
18. Kato T., Goodman R.P., Erben C.M., Turberfield A.J., and Namba K. High-resolution structural analysis of a DNA nanostructure by cryoEM. Nano Lett. 9 (2009) 2747-2750
19. Kato S., Okamoto M., and Asakura S. Polymorphic transition of the flagellar polyhook from Escherichia coli and Salmonella typhimurium. J. Mol. Biol. 173 (1984) 463-476
20. Kojima S., and Blair D.F. The bacterial flagellar motor: structure and function of a complex molecular machine. Int. Rev. Cytol. 233 (2004) 93-134
21. Ludtke S.J., Baldwin P.R., and Chiu W. EMAN: semiautomated software for high-resolution single-particle reconstruction. J. Struct. Biol. 128 (1999) 82-97
22. Macnab R.M. How bacteria assemble flagella. Annu. Rev. Microbiol. 57 (2003) 77-100
23. Macnab R.M., and Ornston M.K. Normal-to-curly flagellar transitions and their role in bacterial tumbling. Stabilization of an alternative quaternary structure by mechanical force. J. Mol. Biol. 112 (1977) 1-30
24. Mimori-Kiyosue Y., Vonderviszt F., and Namba K. Locations of terminal segments of flagellin in the filament structure and their roles in polymerization and polymorphism. J. Mol. Biol. 270 (1997) 222-237
25. Minamino T., Imada K., and Namba K. Molecular motors of the bacterial flagella. Curr. Opin. Struct. Biol. 18 (2008) 693-701
26. Mindell J.A., and Grigorieff N. Accurate determination of local defocus and specimen tilt in electron microscopy. J. Struct. Biol. 142 (2003) 334-347
27. Namba K., and Vonderviszt F. Molecular architecture of bacterial flagellum. Q. Rev. Biophys. 30 (1997) 1-65
28. Sachse C., Chen J.Z., Coureux P., Stroupe M.E., Fandrich M., and Grigorieff N. High-resolution electron microscopy of helical specimens: a fresh look at tobacco mosaic virus. J. Mol. Biol. 371 (2007) 812-835
29. Saijo-Hamano Y., Uchida N., Namba K., and Oosawa K. In vitro characterization of FlgB, FlgC, FlgF, FlgG, and FliE, flagellar basal body proteins of Salmonella. J. Mol. Biol. 339 (2004) 423-435
30. Samatey F.A., Matsunami H., Imada K., Nagashima S., Shaikh T.R., Thomas D.R., Chen J.Z., DeRosier D.J., Kitao A., and Namba K. Structure of the bacterial flagellar hook and implication for the molecular universal joint mechanism. Nature 431 (2004) 1062-1068
31. Shaikh T.R., Thomas D.R., Chen J.Z., Samatey F.A., Matsunami H., Imada K., Namba K., and DeRosier D.J. A partial atomic structure for the flagellar hook of Salmonella typhimurium. Proc. Natl. Acad. Sci. USA 102 (2005) 1023-1028
32. Silverman M., and Simon M. Flagellar rotation and the mechanism of bacterialmotility. Nature 249 (1974) 73-74
33. Sowa Y., and Berry R.M. Bacterial flagellar motor. Q. Rev. Biophys. 41 (2008) 103-132
34. Stagg S.M., Lander G.C., Quispe J., Voss N.R., Cheng A., Bradlow H., Bradlow S., Carragher B., and Potter C.S. A test-bed for optimizing high-resolution single particle reconstructions. J. Struct. Biol. 163 (2008) 29-39
35. Trabuco L.G., Villa E., Mitra K., Frank J., and Schulten K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 16 (2008) 673-683
36. Turner L., Ryu W.S., and Berg H.C. Real-time imaging of fluorescent flagellar filaments. J. Bacteriol. 182 (2000) 2793-2801
37. Wagenknecht T., DeRosier D.J., Shapiro L., and Weissborn A. Three-dimensional reconstruction of the flagellar hook from Caulobacter crescentus. J. Mol. Biol. 151 (1981) 439-465
38. Yonekura K., Maki-Yonekura S., and Namba K. Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy. Nature 424 (2003) 643-650
39. Yonekura K., Braunfeld M.B., Maki-Yonekura S., and Agard D.A. Electron energy filtering significantly improves amplitude contrast of frozen-hydrated protein at 300kV. J. Struct. Biol. 156 (2006) 524-536
40. Yu X., Jin L., and Zhou Z.H. 3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy. Nature 453 (2008) 415-419
41. Zhang X., Settembre E., Xu C., Dormitzer P.R., Bellamy R., Harrison S.C., and Grigorieff N. Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction. Proc. Natl. Acad. Sci. USA 105 (2008) 1867-1872
42. Zhou Z.H. Towards atomic resolution structural determination by single-particle cryo-electron microscopy. Curr. Opin. Struct. Biol. 18 (2008) 218-228