Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 10, 2009, Pages 2476-2481

  Ivanova, Elena P ^a,b   Christen, Richard ^c   Bizet, Chantal ^d   Clermont, Dominique ^d   Motreff, Laurence ^d   Bouchier, Christiane ^d   Zhukova, Natalia V ^e   Crawford, Russell J ^a   Kiprianova, Elena A ^f  

^a SWINBURNE UNIVERSITY OF TECHNOLOGY   (Australia)

^b RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

^c UNIVERSITÉ CÔTE D'AZUR   (France)

^d INSTITUT PASTEUR   (France)

^e INSTITUTE OF BIOLOGY AND SOIL SCIENCE   (Russian Federation)

^f ZABOLOTNY INSTITUTE OF MICROBIOLOGY AND VIROLOGY   (Ukraine)

Author keywords

[No Author keywords available]

Indexed keywords

AGAR; BACTERIAL DNA; BACTERIAL RNA; DNA; ESCULIN; GELATIN; LEVAN; PHLOROGLUCINOL DERIVATIVE; POLYSORBATE 80; RNA 16S; STARCH; SUCROSE;

AGRICULTURAL SPECIES; ANTIMICROBIAL ACTIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; DENITRIFYING BACTERIUM; DNA BINDING; DNA CONTENT; DNA DNA HYBRIDIZATION; GRAM NEGATIVE BACTERIUM; INCUBATION TEMPERATURE; LIPID COMPOSITION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PIGMENTATION; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS BRASSICACEARUM NEOAURANTIACA; PSEUDOMONAS CORRUGATA; PSEUDOMONAS KILONENSIS; PSEUDOMONAS MEDITERRANEA; PSEUDOMONAS SENSU; PSEUDOMONAS THIVERVALENSIS; RHIZOSPHERE; RNA SEQUENCE; SAPROTROPH; SOIL MICROFLORA; SUBSPECIES; TYPE STRAIN;

BASE COMPOSITION; CROPS, AGRICULTURAL; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PIGMENTATION; PLANT ROOTS; PSEUDOMONAS; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); FILICOPHYTA; NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS BRASSICACEARUM; PSEUDOMONAS CORRUGATA; PSEUDOMONAS KILONENSIS; PSEUDOMONAS MEDITERRANEA; PSEUDOMONAS THIVERVALENSIS;

EID: 70350714177     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.009654-0     Document Type: Article

References (28)

1. Achouak, W., Sutra, L., Heulin, T., Meyer, J. M., Fromin, N., Degraeve, S., Christen, R. & Gardan, L. (2000). Pseudomonas brassicacearum sp. nov. and Pseudomonas thivervalensis sp. nov., two root-associated bacteria isolated from Brassica napus and Arabidopsis thaliana. Int J Syst Evol Microbiol 50, 9-18.
2. Ait Tayeb, L., Ageron, E., Grimont, F. & Grimont, P. A. (2005). Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates. Res Microbiol 156, 763-773.
3. Anzai, Y., Kim, H., Park, J.-Y., Wakabayashi, H. & Oyaizu, H. (2000). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50, 1563-1589.
4. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805.
5. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
6. Catara, V., Sutra, L., Morineau, A., Achouak, W., Christen, R. & Gardan, L. (2002). Phenotypic and genomic evidence for the revision of Pseudomonas corrugata and proposal of Pseudomonas mediterranea sp. nov. Int J Syst Evol Microbiol 52, 1749-1758.
7. Chevenet, F., Brun, C., Bañuls, A. L., Jacq, B. & Christen, R. (2006). TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics 7, 439.
8. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
9. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
10. Galtier, N., Gouy, M. & Gautier, C. (1996). SeaView and PHYLO_WIN, two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12, 543-548.
11. Gascuel, O. (1997). BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14, 685-695.
12. Guindon, S. & Gascuel, O. (2003). A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
13. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram negative bacteria. J Bacteriol 66, 24-26.
14. King, E. O., Ward, M. K. & Raney, D. E. (1954). Two simple media for the demonstration of pyocyanin and fluorescein. J Lab Clin Med 44, 301-307.
15. Kiprianova, E. A., Levanova, G. F., Novova, E. V., Smirnov, V. V. & Garagulia, A. D. (1985). Taxonomic study of Pseudomonas aurantiaca Nakhimovskaya, 1948 and the proposal of a neotype strain of this species. Mikrobiologiia 54, 434-440 (in Russian).
16. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL_X version 2.0. Bioinformatics 23, 2947-2948.
17. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
18. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
19. Moore, E. R. B., Mau, M., Arnscherdt, A., Bottger, E. C., Hutson, R. A., Collins, M. D., Van De Peer, Y., De Wachter, R. & Timmis, K. N. (1996). The determination and comparison of the 16S rRNA gene sequence of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships. Syst Appl Microbiol 19, 478-492.
20. AL. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 141-199. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
21. AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part B, pp. 323-379. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
22. Peix, A., Valverde, A., Rivas, R., Igual, J. M., Ramírez-Bahena, M.-H., Mateos, P. F., Santa-Regina, I., Rodríguez-Barrueco, C., Martínez-Molina, E. & Velázquez, E. (2007). Reclassification of Pseudomonas aurantiaca as a synonym of Pseudomonas chlororaphis and proposal of three subspecies, P. chlororaphis subsp. chlororaphis subsp. nov., P. chlororaphis subsp. aureofaciens subsp. nov., comb. nov. and P. chlororaphis subsp. aurantiaca subsp. nov., comb. nov. Int J Syst Evol Microbiol 57, 1286-1290.
23. Sikorski, J., Stackebrandt, E. & Wackernagel, W. (2001). Pseudomonas kilonensis sp. nov., a bacterium isolated from agricultural soil. Int J Syst Evol Microbiol 51, 1549-1555.
24. Smirnov, V. V. & Kiprianova, E. A. (1990). Bacteria of the Genus Pseudomonas. Kiev: Naukova Dumka (in Russian).
25. Stanier, R. Y., Palleroni, N. J. & Doudoroff, M. (1966). The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43, 159-271.
26. Svetashev, V. I., Vysotskii, M. V., Ivanova, E. P. & Mikhailov, V. V. (1995). Cellular fatty acid of Alteromonas species. Syst Appl Microbiol 18, 37-43.
27. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
28. Yamamoto, S., Kasai, H., Arnold, D. L., Jackson, R. W., Vivian, A. & Harayama, S. (2000). Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146, 2385-2394.