Analysis of diversity amongst widely distributed and endemic Atalantia (family Rutaceae) species from Western Ghats of India

Physiology and Molecular Biology of Plants

Volumn 15, Issue 3, 2009, Pages 211-224

  Ranade, S A ^a   Nair, K N ^a   Srivastava, Anuj P ^a,b   Pushpangadan, P ^a,c  

^a CSIR NATIONAL BOTANICAL RESEARCH INSTITUTE   (India)

^b Australian National University   (Australia)

^c AMITY UNIVERSITY   (India)

Author keywords

AMOVA; Atalantia; Diversity; PCA; Rutaceae; SPAR methods; Western Ghats

Indexed keywords

ATALANTIA; ATALANTIA MONOPHYLLA; ATALANTIA RACEMOSA; RUTACEAE;

EID: 70350702884     PISSN: 09715894     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12298-009-0025-7     Document Type: Article

References (44)

1. Araujo EF de, Queiroz LP de and Machado MA (2003). What is Citrus? Taxonomic implications from a study of cp-DNA evolution in the tribe Citreae (Rutaceae subfamily Aurantioideae). Organisms Diversity and Evolution, 3: 55-62.
2. Berger SL and Kimmel AR (1987). Guide to molecular cloning methods. Methods in Enzymology, 152: 435-437.
3. Bhattacharya E, Dandin SB and Ranade SA (2005) Single Primer Amplification Reaction methods reveal exotic and indigenous mulberry varieties are similarly diverse. J. Biosci., 30: 669-677.
4. Bhattacharya E and Ranade SA (2001). RAPD and DAMD profile differences amongst mulberry varieties. BMC Plant Biology, 1: 3. http://www.biomedcentral.com/content/pdf/1471-2229-1-3.pdf (Last Accessed on 14 December 2008).
5. Birmeta G, Nybom H and Bekele E (2004). Distinction between wild and cultivated enset (Ensete ventricosum) gene pools in Ethiopia using RAPD markers. Hereditas, 140: 139-48.
6. Chase WM, Morton CM and Kallunki AJ (1999). Phylogenetic relationships of Rutaceae: A cladistic analysis of the subfamilies using evidence from RBC L and ATP B sequence variation. American Journal of Botany, 86: 1191-1199.
7. Domínguez CA, Abarca CA, Eguiarte LE and Molina-Freaner F (2005). Local genetic differentiation among populations of the mass-flowering tropical shrub Erythroxylum havanense (Erythroxylaceae). New Phytologist, 166: 663.
8. Fan XX, Shen L, Zhang X, Chen XY and Fu CX (2004) Assessing genetic diversity of Ginkgo biloba L. (Ginkgoaceae) populations from China by RAPD markers. Biochemical Genetics, 42: 269-278.
9. Fu C, Qiu Y and Kong H (2003). RAPD analysis for genetic diversity in Changium smyrnioides (Apiaceae), an endangered plant. Botanical Bulletin of Academia Sinica, 44: 13-18.
10. Ge X-J, Yu Y, Yuan Y-M, Huang H-W and Yan C (2005). Genetic diversity and geographic differentiation in endangered Ammopiptanthus (Leguminosae) populations in desert regions of Northwest China as revealed by ISSR Analysis. Annals of Botany, 95: 843-851.
11. Heath DD, Iwana GK and Delvin RH (1993). PCR primed with VNTR core sequences yield species specific patterns and hypervariable probes. Nucleic Acids Research, 21: 5782-5785.
12. Herrero R, Asins MJ, Pina JA, Carbonell AE and Navarro L (1996). Genetic diversity in the orange subfamily Aurantioideae. II. Genetic relationships among genera and species. Theoretical and Applied Genetics, 93: 1327-1334.
13. Jaccard P (1901). Etude comparative de la distribution florale dans une portion des Alpes et des Jura. Bulletin de Societe des Vaudoise Sciences Naturale, 37: 547-579.
14. Kumar S, Kanwal R, and Khare P (2009). Flavones and acridones from Atalantia wightii. Indian Journal of Chemistry B, 48B: 291-294.
15. Lorenz M, Partensky F, Borner T and Hess WR (1995). Sequencing of RAPD fragments amplified from the genome of the prokaryote Prochlorococcus marinus (Prochlorophyta). Biochememistry and Molecular Biology International, 36: 705-713.
16. Mittermeier R A, Gil P R, Hoffmann M, Pilgrim J, Brooks T, Mittermeier CG, Lamoreux J and Da Fonseca GAB (2004). Hotspots Revisited: Earth's Biologically Richest and Most Endangered Terrestrial Ecoregions, CEMEX Books on Nature.
17. Morton C M, Grant M and Blackmore S (2003) Phylogenetic relationships of the Aurantioideae inferred from chloroplast DNA sequence data. American Journal of Botany, 90: 1463-1469.
18. Nair K N and Nayar M P (1997). Rutaceae. In: The Flora of India, (Eds. Hajra PK, Nair VJ and Daniel P), Botanical Survey of India, Calcutta, Vol 4: 259-408.
19. Narzary D, Mahar KS, Rana TS and Ranade SA (2009). Analysis of genetic diversity among wild pomegranates in Western Himalayas, using PCR methods. Scientia Horticulturae, 121: 237-242.
20. Nei M (1973). Analysis of gene diversity in subdivided populations. Proceedings of National Academy of Sciences (USA), 70: 3321-3323.
21. Page RDM (2001). TreeView (Win32) ver. 1.6.5. http://taxonomy.zoology.gla.ac.uk/rod/treeview.html (Last Accessed on 14 December 2008).
22. Parsons BJ, Newbury HJ, Jackson MT and Ford-Lloyd BV (1997). Contrasting genetic diversity relationships are revealed in rice (Oryza sativa L.) using different marker types. Molecular Breeding, 3: 115-125.
23. Pavlicek A, Hrda S and Flegr J (1999). FreeTree - Freeware program for construction of phylogenetic trees on the basis of distance data and bootstrapping/jackknife analysis of the tree robustness. Application in the RAPD analysis of the genus Frenkelia. Folia Biologica (Praha.), 45: 97-99. http://www.natur.cuni.cz/~flegr/programs/freetree.htm (Last Accessed on 14 December 2008).
24. Peakall R and Smouse PE (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6: 288-295. (http://www.anu.edu.au/BoZo/GenAlEx) (Last Accessed on 14 December 2008).
25. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey SV and Rafalski A (1996). The utility of RFLP, RAPD, AFLP and SSRP (microsatellite) markers for germplasm analysis. Molecular Breeding, 2: 225-238.
26. Ranade SA and Farooqui N (2002). Assessment of profile variations amongst provenances of neem using single-primer-amplification reaction (SPAR) methods. Molecular Biology Today, 3: 1-10. http://www.horizonpress.com/mbt/v/v3/01.pdf (Last Accessed on 14 December 2008).
27. Ranade SA, Verma A, Gupta M and Kumar N (2002). RAPD profile analysis of betel vine cultivars. Biologia Plantarum, 45: 523-527.
28. Ranade SA, Srivastava AP, Rana TS, Srivastava J and Tuli R (2008). Easy assessment of diversity in Jatropha curcas L. plants using two Single Primer Amplification Reaction (SPAR) methods. Biomass and Bioenergy, 32: 533-540.
29. Ranade SA, Rana TS and Narzary D (2009). SPAR profiles and genetic diversity amongst pomegranate (Punica granatum L.) genotypes. Physiology and Molecular Biology of Plants, 15: 61-70.
30. Saxena S, Chandra R, Srivastava AP, Mishra M, Pathak RK and Ranade SA (2005). Analysis of genetic diversity among papaya cultivars using Single Primer Amplification Reaction (SPAR) methods. Journal of Horticultural Science and Biotechnology, 80: 291-296.
31. Schneider S, Roessli D and Excoffier L (2000). Arlequin: A software for population genetics data analysis. Ver. 2.001. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Switzerland. http://lgb.unige.ch/arlequin/software (Last Accessed on 14 December 2008).
32. Shannon CE and Weaver W (1949). The mathematical theory of communication. Univ. of Illinois Press, Urbana.
33. Srivastava AP, Chandra R, Saxena S, Rajan S, Ranade SA and Prasad V (2007). A PCR-based assessment of genetic diversity, and parentage analysis among commercial mango cultivars and hybrids. Journal of Horticultural Science and Biotechnology, 82: 951-959.
34. Stone BC (1985) Rutaceae. In: A revised handbook to the flora of Ceylon ((Eds. Dassanayake MD and Fosberg FR) Amerind, New Delhi, Vol 5: 176-406.
35. Swingle WT and Reece P (1967). The botany of Citrus and its wild relatives of the orange subfamily (Family Rutaceae subfamily Aurantioideae). In: The Citrus Industry (Eds. Reulther W, Webber HJ & Batchelor, LD,) vol 1: 190-430. Atalantia pp 315-326.
36. The wealth of India (2000). First Supplement Series (Raw Material), National Institute of Science Communication, CSIR New Delhi, Vol 1: 478-479.
37. Verma A, Kumar N and Ranade SA (2004). Genetic diversity amongst landraces of a dioecious vegetatively propagated plant, betel vine (Piper betle L.). Journal of Biosciences, 29: 319-328.
38. Wang Z-S, An S-Q, Liu H, Leng X, Zheng J-W and Liu YH (2005). Genetic Structure of the Endangered Plant Neolitsea sericea (Lauraceae) from the Zhoushan Archipelago Using RAPD Markers. Annals of Botany, 95: 305-313.
39. Welsh J and McClelland M (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research, 18: 7213-7218.
40. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA and Tingey SV (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18: 6531-6535.
41. Xie G-W, Wang D-L, Yuan Y-M and Ge X-J (2005). Population genetic structure of Monimopetalum chinense (Celastraceae), an endangered endemic species of Eastern China. Annals of Botany, 95: 773-777.
42. Yeh FC, Yang R-C and Boyle T (1997). POPGENE - A Microsoft Windows-based freeware for population genetic analysis, ver. 1.31 (32 bit). http://www.ualberta.ca/~fyeh (Last Accessed on 14 December 2008).
43. Zhou Z, Bebeli PJ, Somers DJ and Gustafson JP (1997). Direct amplification of minisatellite- region DNA with VNTR core sequences in the genus Oryza. Theoretical and Applied Genetics, 95: 942-949.
44. Zietkiewicz E, Rafalski A and Labuda D (1994). Genome fingerprinting by simple sequence repeats (SSR)-anchored PCR amplification. Genomics, 20: 176-183.