Zoogloea caeni sp. nov., a floc-forming bacterium isolated from activated sludge

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 3, 2009, Pages 526-530

  Shao, Yongqi ^a   Chung, Bok Sil ^a,b   Lee, Seung Sik ^b   Park, Woojun ^c   Lee, Sang Suk ^d   Jeon, Che Ok ^a  

^a Chung Ang University   (South Korea)

^b Gyeongsang National University   (South Korea)

^c Korea University   (South Korea)

^d Sunchon National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; GENOMIC DNA; PHOSPHATIDYLETHANOLAMINE; RNA 16S; UBIQUINONE DERIVATIVE;

ACTIVATED SLUDGE; AEROBIC BACTERIUM; ARTICLE; BACTERIAL FLAGELLUM; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; GRAM NEGATIVE BACTERIUM; INCUBATION TEMPERATURE; KOREA; LIPID COMPOSITION; NEW SPECIES; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RHODOCYCLACEAE; RNA SEQUENCE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; TYPE STRAIN; ZOOGLOEA; ZOOGLOEA CAENI; ZOOGLOEA ORYZAE; ZOOGLOEA RESINIPHILA;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FLOCCULATION; GENES, RRNA; KOREA; MOLECULAR SEQUENCE DATA; NITROGEN FIXATION; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; SPECIES SPECIFICITY; WASTE DISPOSAL, FLUID; ZOOGLOEA;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; ZOOGLOEA; ZOOGLOEA RESINIPHILA;

EID: 70350692046     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65670-0     Document Type: Article

References (26)

1. Crabtree, K. & McCoy, E. (1967). Zoogloea ramigera Itzigsohn, identification and description. Request for an opinion as to the status of the generic name Zoogloea. Int J Syst Bacteriol 17, 1-10.
2. Dugan, P. R., Stoner. D. L. & Pickrum, H. M. (1992). The genus Zoogloea. In The Prokaryotes, 2nd edn, pp. 3952-3964. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
3. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
4. Felsenstein, J. (2002). PHYLIP (phylogeny inference package), version 3.6a. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
5. Gomori, G. (1955). Preparation of buffers for use in enzyme studies. Methods Enzymol 1, 138-146.
6. Hiraishi, A., Shin, Y. K. & Sugiyama, J. (1997). Proposal to reclassify Zoogloea ramigera IAM 12670 (P. R. Dugan 115) as Duganella zoogloeoides gen. nov., sp. nov. Int J Syst Bacteriol 47, 1249-1252.
7. Jeon, C. O., Lee, D. S. & Park, J. M. (2003). Microbial communities in activated sludge performing enhanced biological phosphorus removal in a sequencing batch reactor. Water Res 37, 2195-2205.
8. Jeon, C. O., Lim, J. M., Lee, J. M., Xu, L. H., Jiang, C. L. & Kim, C. J. (2005). Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55, 1891-1896.
9. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
10. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
11. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
12. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
13. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
14. Lu, S., Park, M., Ro, H.-S., Lee, D. S., Park, W. & Jeon, C. O. (2006). Analysis of microbial communities using culture-dependent and culture-independent approaches in an anaerobic/aerobic SBR reactor. J Microbiol 44, 155-161.
15. Mohn, W. W., Wilson, A. E., Bicho, P. & Moore, E. R. B. (1999). Physiological and phylogenetic diversity of bacteria growing on resin acids. Syst Appl Microbiol 22, 68-78.
16. Park M., Ryu, S. H., Vu, T. H., Ro, H. S., Yun, P. Y. & Jeon, C. O. (2007). Flavobacterium defluvii sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 57, 233-237.
17. Poly, F., Monrozier, L. J. & Bally, R. (2001). Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil. Res Microbiol 152, 95-103.
18. Rosselló-Mora, R. & Amann, R. (2001). The species concept for prokaryotes. FEMS Microbiol Rev 25, 39-67.
19. Ryu, S. H., Park, M., Jeon, Y., Lee, J. R., Park, W. & Jeon, C. O. (2007). Flavobacterium filum sp. nov., isolated from a wastewater treatment plant in Korea. Int J Syst Evol Microbiol 57, 2026-2030.
20. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
21. Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P. A., Kampfer, P., Maiden, M. C., Nesme, X., Rossello-Mora, R., Swings, J. & other authors (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
22. Stanier, R. Y., Palleroni, N. J. & Doudorhoff, M. (1966). The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43, 159-271.
23. Tamaoka, J. & Komagate, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
24. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
25. AL. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 214-219. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
26. Xie, C. H. & Yokota, A. (2006). Zoogloea oryzae sp. nov., a nitrogen-fixing bacterium isolated from rice paddy soil, and reclassification of the strain ATCC 19623 as Crabtreella saccharophila gen. nov., sp. nov. Int Syst Evol Microbiol 56, 619-624.