Determination of the self-diffusion coefficient of intracellular water using PGSE NMR with variable gradient pulse length

Journal of Magnetic Resonance

Volumn 201, Issue 2, 2009, Pages 250-254

  Åslund, Ingrid ^a   Topgaard, Daniel ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

Cell water; PGSE; Self diffusion; Short gradient pulse approximation; Yeast

Indexed keywords

EFFECTIVE DIFFUSION; INTRACELLULAR WATER; LIVING CELL; MEAN-SQUARE DISPLACEMENT; PGSE; PLASMA MEMBRANES; PULSE LENGTH; PULSED GRADIENT SPIN ECHOS; SELF-DIFFUSION; SELF-DIFFUSION COEFFICIENTS; SHORT GRADIENT PULSE APPROXIMATION; SMALL SIZE; STANDARD METHOD; VARIABLE GRADIENT; WATER MOLECULE;

CELL MEMBRANES; DIFFUSION IN LIQUIDS; SULFUR COMPOUNDS; YEAST;

NUCLEAR MAGNETIC RESONANCE;

WATER;

ALGORITHM; ARTICLE; CHEMISTRY; DIFFUSION; INTRACELLULAR FLUID; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SACCHAROMYCES CEREVISIAE; SIGNAL PROCESSING;

ALGORITHMS; DIFFUSION; INTRACELLULAR FLUID; MAGNETIC RESONANCE SPECTROSCOPY; SACCHAROMYCES CEREVISIAE; SIGNAL PROCESSING, COMPUTER-ASSISTED; WATER;

EID: 70350617673     PISSN: 10907807     EISSN: 10960856     Source Type: Journal    
DOI: 10.1016/j.jmr.2009.09.006     Document Type: Article

References (46)

1. Tehei M., Franzetti B., Wood K., Gabel F., Fabiani E., Jasnin M., Zamponi M., Oesterhelt D., Zaccai G., Ginzburg M., and Ginzburg B.-Z. Neutron scattering reveals extremely slow cell water in a Dead Sea organism. Proc. Natl. Acad. Sci. USA 104 (2007) 766-771
2. Persson E., and Halle B. Cell water dynamics on multiple time scales. Proc. Natl. Acad. Sci. USA 105 (2008) 6266-6271
3. Stejskal E.O., and Tanner J.E. Spin diffusion measurements: spin echoes in the presence of a time-dependent field gradient. J. Chem. Phys. 42 (1965) 288-292
4. Callaghan P.T. Principles of Nuclear Magnetic Resonance Microscopy (1991), Clarendon Press, Oxford
5. Price W.S. Pulsed-field gradient nuclear magnetic resonance as a tool for studying translational diffusion: Part 1. Basic theory. Concepts Magn. Reson. 9 (1997) 299-336
6. Grebenkov D.S. NMR survey of reflected Brownian motion. Rev. Mod. Phys. 79 (2007) 1077-1137
7. Topgaard D. Probing biological tissue microstructure with magnetic resonance diffusion techniques. Curr. Opin. Colloid Interface Sci. 11 (2006) 7-12
8. Murday J.S., and Cotts R.M. Self-diffusion coefficient of liquid lithium. J. Chem. Phys. 48 (1968) 4938-4945
9. Tanner J.E., and Stejskal E.O. Restricted self-diffusion of protons in colloidal systems by the pulsed-gradient, spin-echo method. J. Chem. Phys. 49 (1968) 1768-1777
10. Cory D.G., and Garroway A.N. Measurement of translational displacement probabilities by NMR - an indicator of compartmentation. Magn. Reson. Med. 14 (1990) 435-444
11. Topgaard D., and Söderman O. Experimental determination of pore size and shape using q-space NMR microscopy in the long diffusion-time limit. Magn. Reson. Imaging 21 (2003) 69-76
12. Tanner J.E. Intracellular diffusion of water. Arch. Biochem. Biophys. 224 (1983) 416-428
13. Heink W., Kärger J., Fleischer G., and Rauchfuß J. PFG NMR self-diffusion measurements with large field gradients. J. Magn. Reson. A 114 (1995) 101-104
14. Kärger J., and Heink W. The propagator representation of molecular transport in microporous crystallites. J. Magn. Reson. 51 (1983) 1-7
15. Mitra P.P., Sen P.N., Schwartz L.M., and Le Doussal P. Diffusion propagator as a probe of porous media. Phys. Rev. Lett. 68 (1992) 3555-3558
16. Linse P., and Söderman O. The validity of the short-gradient-pulse approximation in NMR studies of restricted diffusion, simulations of molecules diffusing between planes, in cylinders and spheres. J. Magn. Reson. A 116 (1995) 77-86
17. Malmborg C., Topgaard D., and Söderman O. NMR diffusometry and the short gradient pulse approximation. J. Magn. Reson. 169 (2004) 85-91
18. Price W.S., Stilbs P., and Söderman O. Determination of pore space shape and size in porous systems using NMR diffusometry. Beyond the short gradient pulse approximation. J. Magn. Reson. 160 (2003) 139-143
19. Mager W.H., and Winderickx J. Yeast as a model for medical and medicinal research. Trends Pharmacol. Sci. 26 (2005) 265-273
20. Menacho-Marquez M., and Murguia J.R. Yeast on drugs: Saccharomyces cerevisiae as a tool for anticancer drug research. Clin. Transl. Oncol. 9 (2007) 221-228
21. Neuman C.H. Spin echo of spins diffusing in a bounded medium. J. Chem. Phys. 60 (1974) 4508-4511
22. Balinov B., Jönsson B., Linse P., and Söderman O. The NMR self-diffusion method applied to restricted diffusion. Simulation of echo attenuation from molecules in spheres and between planes. J. Magn. Reson. A 104 (1993) 17-25
23. van Gelderen P., DesPres D., van Zijl P.C.M., and Moonen C.T.W. Evaluation of restricted diffusion in cylinders. Phosphocreatine in rabbit leg muscle. J. Magn. Reson. B 103 (1994) 255-260
24. Caprihan A., Wang L.Z., and Fukushima E. A multiple-narrow-pulse approximation for restricted diffusion in a time-varying field gradient. J. Magn. Reson. A 118 (1996) 94-102
25. Callaghan P.T. A simple matrix formalism for spin echo analysis of restricted diffusion under generalized gradient waveforms. J. Magn. Reson. 129 (1997) 74-84
26. Codd S.L., and Callaghan P.T. Spin echo analysis of restricted diffusion under generalized gradient waveforms: planar, cylindrical, spherical pores with wall relaxivity. J. Magn. Reson. 137 (1999) 358-372
27. Barzykin A.V. Theory of spin echo in restricted geometries under a step-wise gradient pulse sequence. J. Magn. Reson. 139 (1999) 342-353
28. Mitra P.P., and Halperin B.I. Effects of finite gradient-pulse widths in pulsed-field-gradient diffusion measurements. J. Magn. Reson. A 113 (1995) 94-101
29. Malmborg C., Sjöbeck M., Brockstedt S., Englund E., Söderman O., and Topgaard D. Mapping the intracellular fraction of water by varying the gradient pulse length in q-space diffusion MRI. J. Magn. Reson. 180 (2006) 280-285
30. Åslund I., Cabaleiro-Lago C., Söderman O., and Topgaard D. Diffusion NMR for determining the homogeneous length scale in lamellar phases. J. Phys. Chem. B 112 (2008) 2782-2794
31. Press W.H., Teukolsky S.A., Vetterling W.T., and Flannery B.P. Numerical Recipes: The Art of Scientific Computing (2007), Cambridge University Press, New York
32. Åslund I., Nowacka A., Nilsson M., and Topgaard D. Filter-exchange PGSE NMR determination of cell membrane permeability. J. Magn. Reson. 200 (2009) 291-295
33. Alper J.S., and Gelb R.I. Standard errors and confidence intervals in nonlinear regression: comparison of Monte Carlo and parametric statistics. J. Phys. Chem. 94 (1990) 4747-4751
34. Andrasko J. Measurement of membrane permeability to slowly penetrating molecules by a pulse gradient NMR method. J. Magn. Reson. 21 (1976) 479-484
35. Labadie C., Lee J.-H., Vetek G., and Springer Jr. C.S. Relaxographic imaging. J. Magn. Reson. B 105 (1994) 99-112
36. Silva M.D., Helmer K.G., Lee J.-H., Han S.S., Springer Jr. C.S., and Sotak C.H. Deconvolution of compartmental water diffusion coefficients in yeast-cell suspensions using combined T1 and diffusion measurements. J. Magn. Reson. 156 (2002) 52-63
37. 1H NMR PFG measurements. Phys. Chem. Chem. Phys. 2 (2000) 4740-4742
38. Price W.S., Ide H., and Arata Y. Self-diffusion of supercooled water to 238 K using PGSE NMR diffusion measurements. J. Phys. Chem. A 103 (1999) 448-450
39. Hrabe J., Hrabetova S., and Segeth K. A model of the effective diffusion and tortuosity in the extracellular space of the brain. Biophys. J. 87 (2004) 1606-1617
40. Jönsson B., Wennerström H., Nilsson P.G., and Linse P. Self-diffusion of small molecules in colloidal systems. Colloid Polym. Sci. 264 (1986) 77-88
41. Osumi M. The ultrastructure of yeast: cell wall structure and formation. Micron 29 (1998) 207-233
42. Lipke P.N., and Ovalle R. Cell wall architecture in yeast: new structure and new challenges. J. Bacteriol. 180 (1998) 3735-3740
43. Fulton A. How crowded is the cytoplasm?. Cell 30 (1982) 345-347
44. Medalia O., Weber I., Frangakis A.S., Nicastro D., Gerisch G., and Baumeister W. Macromolecular architecture in eukaryotic cells visualized by cryoeloctron tomography. Science 298 (2002) 1209-1213
45. 17O spin relaxation in deeply supercooled solutions. Biophys. J. 95 (2008) 2951-2963
46. Stadler A.M., Embs J.P., Digel I., Artmann G.M., Unruh T., Büldt G., and Zaccai G. Cytoplasmic water and hydration layer dynamics in human red blood cells. J. Am. Chem. Soc. 130 (2008) 16852-16853