메뉴 건너뛰기




Volumn 42, Issue 6, 2009, Pages 1046-1055

Two learning approaches for protein name extraction

Author keywords

Bigram language model; Information extraction; Protein name extraction; Rule learning; Statistical learning

Indexed keywords

BIGRAM LANGUAGE MODEL; INFORMATION EXTRACTION; PROTEIN NAME EXTRACTION; RULE LEARNING; STATISTICAL LEARNING;

EID: 70350569364     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2009.05.004     Document Type: Article
Times cited : (8)

References (38)
  • 1
    • 40049083982 scopus 로고    scopus 로고
    • Extracting interactions between proteins from the literature
    • Zhou D., and He Y. Extracting interactions between proteins from the literature. J Biomed Inform 41 2 (2008) 393-407
    • (2008) J Biomed Inform , vol.41 , Issue.2 , pp. 393-407
    • Zhou, D.1    He, Y.2
  • 2
    • 0036678776 scopus 로고    scopus 로고
    • Tagging gene and protein names in biomedical text
    • Tanabe L., and Wilbur W.J. Tagging gene and protein names in biomedical text. Bioinformatics 18 8 (2002) 1124-1132
    • (2002) Bioinformatics , vol.18 , Issue.8 , pp. 1124-1132
    • Tanabe, L.1    Wilbur, W.J.2
  • 3
    • 2442702846 scopus 로고    scopus 로고
    • Recognizing names in biomedical texts: a machine learning approach
    • Zhou G., Zhang J., Su J., Shen D., and Tan C. Recognizing names in biomedical texts: a machine learning approach. Bioinformatics 20 7 (2004) 1178-1190
    • (2004) Bioinformatics , vol.20 , Issue.7 , pp. 1178-1190
    • Zhou, G.1    Zhang, J.2    Su, J.3    Shen, D.4    Tan, C.5
  • 5
    • 8444226720 scopus 로고    scopus 로고
    • Term identification in the biomedical literature
    • Krauthammer M., and Nenadic G. Term identification in the biomedical literature. J Biomed Inform 37 6 (2004) 512-526
    • (2004) J Biomed Inform , vol.37 , Issue.6 , pp. 512-526
    • Krauthammer, M.1    Nenadic, G.2
  • 6
    • 0034707204 scopus 로고    scopus 로고
    • Using BLAST for identifying gene and protein names in journal articles
    • Krauthammer M., Rzhetsky A., Morozov P., and Friedman C. Using BLAST for identifying gene and protein names in journal articles. Gene 259 1-2 (2000) 245-252
    • (2000) Gene , vol.259 , Issue.1-2 , pp. 245-252
    • Krauthammer, M.1    Rzhetsky, A.2    Morozov, P.3    Friedman, C.4
  • 7
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul S., Madden T., Schaffer A., Zhang J., Zhang Z., Miller W., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 17 (1997) 3389-33402
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-33402
    • Altschul, S.1    Madden, T.2    Schaffer, A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6
  • 8
    • 8444232801 scopus 로고    scopus 로고
    • Improving the performance of dictionary-based approaches in protein name recognition
    • Tsuruoka Y., and Tsujii J. Improving the performance of dictionary-based approaches in protein name recognition. J Biomed Inform 37 6 (2004) 461-470
    • (2004) J Biomed Inform , vol.37 , Issue.6 , pp. 461-470
    • Tsuruoka, Y.1    Tsujii, J.2
  • 10
    • 34248198854 scopus 로고    scopus 로고
    • Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification
    • Schuemie M.J., Mons B., Weeber M., and Kors J.A. Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification. J Biomed Inform 40 3 (2007) 316-324
    • (2007) J Biomed Inform , vol.40 , Issue.3 , pp. 316-324
    • Schuemie, M.J.1    Mons, B.2    Weeber, M.3    Kors, J.A.4
  • 11
    • 4944229711 scopus 로고    scopus 로고
    • Genia corpus: a semantically annotated corpus for bio-textmining
    • Kim J.-D., Ohta T., Tateisi Y., and Tsujii J. Genia corpus: a semantically annotated corpus for bio-textmining. Bioinformatics 19 Suppl. 1 (2003) 180-182
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 1 , pp. 180-182
    • Kim, J.-D.1    Ohta, T.2    Tateisi, Y.3    Tsujii, J.4
  • 12
    • 0031633368 scopus 로고    scopus 로고
    • Toward information extraction: identifying protein names from biological papers
    • Fukuda K., Tsunoda T., Tamura A., and Takagi T. Toward information extraction: identifying protein names from biological papers. Pac Symp Biocomput (1998) 707-718
    • (1998) Pac Symp Biocomput , pp. 707-718
    • Fukuda, K.1    Tsunoda, T.2    Tamura, A.3    Takagi, T.4
  • 14
    • 0037250015 scopus 로고    scopus 로고
    • Protein structures and information extraction from biological texts: the PASTA system
    • Demetriou G., Gaizauskas R., Artymiuk P., and Willett P. Protein structures and information extraction from biological texts: the PASTA system. Bioinformatics 19 1 (2003) 135-143
    • (2003) Bioinformatics , vol.19 , Issue.1 , pp. 135-143
    • Demetriou, G.1    Gaizauskas, R.2    Artymiuk, P.3    Willett, P.4
  • 15
    • 0033643234 scopus 로고    scopus 로고
    • Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures
    • Humphreys K., Demetriou G., and Gaizauskas R. Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures. Pac Symp Biocomput (2000) 502-513
    • (2000) Pac Symp Biocomput , pp. 502-513
    • Humphreys, K.1    Demetriou, G.2    Gaizauskas, R.3
  • 16
    • 11144227464 scopus 로고    scopus 로고
    • An approach to protein name extraction using heuristics and a dictionary
    • Seki K., and Mostafa J. An approach to protein name extraction using heuristics and a dictionary. Am Soc Inf Sci Technol Annu Conf (2003) 71-77
    • (2003) Am Soc Inf Sci Technol Annu Conf , pp. 71-77
    • Seki, K.1    Mostafa, J.2
  • 17
    • 16244423656 scopus 로고    scopus 로고
    • Comparative experiments on learning information extractors for proteins and their interactions
    • Bunescu R., Ge R., Kate R.J., Marcotte E.M., Mooney R.J., Ramani A.K., and Wong Y.W. Comparative experiments on learning information extractors for proteins and their interactions. Artif Intell Med 33 2 (2005) 139-155
    • (2005) Artif Intell Med , vol.33 , Issue.2 , pp. 139-155
    • Bunescu, R.1    Ge, R.2    Kate, R.J.3    Marcotte, E.M.4    Mooney, R.J.5    Ramani, A.K.6    Wong, Y.W.7
  • 21
    • 84867919822 scopus 로고
    • Transformation-based error-driven learning and natural language processing: a case study in part-of-speech tagging
    • Brill E. Transformation-based error-driven learning and natural language processing: a case study in part-of-speech tagging. Comput Linguist 21 4 (1995) 543-565
    • (1995) Comput Linguist , vol.21 , Issue.4 , pp. 543-565
    • Brill, E.1
  • 23
    • 0002652285 scopus 로고    scopus 로고
    • A maximum entropy approach to natural language processing
    • Berger A.L., Della Pietra S.A., and Della Pietra V.J. A maximum entropy approach to natural language processing. Comput Linguist 22 1 (1996) 39-71
    • (1996) Comput Linguist , vol.22 , Issue.1 , pp. 39-71
    • Berger, A.L.1    Della Pietra, S.A.2    Della Pietra, V.J.3
  • 26
    • 16244362685 scopus 로고    scopus 로고
    • Bio-medical entity extraction using support vector machines
    • Takeuchi K., and Collier N. Bio-medical entity extraction using support vector machines. Artif Intell Med 33 2 (2005) 125-137
    • (2005) Artif Intell Med , vol.33 , Issue.2 , pp. 125-137
    • Takeuchi, K.1    Collier, N.2
  • 27
    • 29144501213 scopus 로고    scopus 로고
    • High-recall protein entity recognition using a dictionary
    • Kou Z., Cohen W.W., and Murphy R.F. High-recall protein entity recognition using a dictionary. Bioinformatics 21 1 (2005) 266-273
    • (2005) Bioinformatics , vol.21 , Issue.1 , pp. 266-273
    • Kou, Z.1    Cohen, W.W.2    Murphy, R.F.3
  • 28
    • 9544222527 scopus 로고    scopus 로고
    • Protein names precisely peeled off free text
    • Mika S., and Rost B. Protein names precisely peeled off free text. Bioinformatics 20 1 (2004) 241-247
    • (2004) Bioinformatics , vol.20 , Issue.1 , pp. 241-247
    • Mika, S.1    Rost, B.2
  • 29
    • 8444241489 scopus 로고    scopus 로고
    • Enhancing performance of protein and gene name recognizers with filtering and integration strategies
    • Hou W., and Chen H. Enhancing performance of protein and gene name recognizers with filtering and integration strategies. J Biomed Inform 37 6 (2004) 448-460
    • (2004) J Biomed Inform , vol.37 , Issue.6 , pp. 448-460
    • Hou, W.1    Chen, H.2
  • 32
    • 0042626106 scopus 로고    scopus 로고
    • Automatically identifying gene/protein terms in MEDLINE abstracts
    • Yu H., Hatzivassiloglou V., Rzhetsky A., and Wilbur W.J. Automatically identifying gene/protein terms in MEDLINE abstracts. J Biomed Inform 35 5-6 (2002) 322-330
    • (2002) J Biomed Inform , vol.35 , Issue.5-6 , pp. 322-330
    • Yu, H.1    Hatzivassiloglou, V.2    Rzhetsky, A.3    Wilbur, W.J.4
  • 33
    • 11144244027 scopus 로고    scopus 로고
    • A hybrid approach to protein name identification in biomedical texts
    • Seki K., and Mostafa J. A hybrid approach to protein name identification in biomedical texts. Inform Proc Manag 41 4 (2005) 723-743
    • (2005) Inform Proc Manag , vol.41 , Issue.4 , pp. 723-743
    • Seki, K.1    Mostafa, J.2
  • 35
    • 0028576341 scopus 로고
    • Some advances in transformation-based part of speech tagging
    • American Association for Artificial Intelligence;
    • Brill E. Some advances in transformation-based part of speech tagging. In: Proceedings of the twelfth national conference on artificial intelligence, vol. 1. American Association for Artificial Intelligence; 1994. p. 722-27.
    • (1994) Proceedings of the twelfth national conference on artificial intelligence , vol.1 , pp. 722-727
    • Brill, E.1
  • 36
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • [and 623-56]
    • Shannon C.E. A mathematical theory of communication. Bell Sys Tech J 27 (1948) 379-423 [and 623-56]
    • (1948) Bell Sys Tech J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 37
    • 33745683944 scopus 로고    scopus 로고
    • Generalizing predicates with string arguments
    • Cicekli I., and Cicekli N.K. Generalizing predicates with string arguments. Appl Intell 25 1 (2006) 23-36
    • (2006) Appl Intell , vol.25 , Issue.1 , pp. 23-36
    • Cicekli, I.1    Cicekli, N.K.2
  • 38
    • 84953486351 scopus 로고
    • Good-turing smoothing without tears
    • Gale W., and Sampson G. Good-turing smoothing without tears. J Quant Linguist 2 (1995) 217-237
    • (1995) J Quant Linguist , vol.2 , pp. 217-237
    • Gale, W.1    Sampson, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.