-
1
-
-
1542664516
-
A literature based method for identifying gene-disease connections
-
Adamic, L. A., Wilkinson, D., Huberman, B. A., & Adar, E. (2002). A literature based method for identifying gene-disease connections. In Proceedings of the IEEE computer society bioinformatics conference (CSB 2002) (pp. 109-117)
-
(2002)
Proceedings of the IEEE Computer Society Bioinformatics Conference (CSB 2002)
, pp. 109-117
-
-
Adamic, L.A.1
Wilkinson, D.2
Huberman, B.A.3
Adar, E.4
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research. 25(17):1997;3389-3402
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0037245984
-
Genbank
-
Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Wheeler D.L. Genbank. Nucleic Acids Research. 31(1):2003;23-27
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 23-27
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
9
-
-
11144221739
-
Exploiting syntax when detecting protein names in text
-
Franzén, K., Eriksson, G., Olsson, F., Asker, L., & Lidén, P. (2002). Exploiting syntax when detecting protein names in text. In Proceedings of workshop on natural language processing in biomedical applications (NLPBA 2002)
-
(2002)
Proceedings of Workshop on Natural Language Processing in Biomedical Applications (NLPBA 2002)
-
-
Franzén, K.1
Eriksson, G.2
Olsson, F.3
Asker, L.4
Lidén, P.5
-
10
-
-
0035236048
-
GENIES: A natural-language processing system for the extraction of molecular pathways from journal articles
-
Friedman C., Kra P., Yu H., Krauthammer M., Rzhetsky A. GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics. 17(Suppl. 1):2001;S74-S82
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Friedman, C.1
Kra, P.2
Yu, H.3
Krauthammer, M.4
Rzhetsky, A.5
-
12
-
-
0031633368
-
Toward information extraction: Identifying protein names from biological papers
-
Fukuda, K., Tsunoda, T., Tamura, A., & Takagi, T. (1998). Toward information extraction: identifying protein names from biological papers. In Proceedings of the pacific symposium on biocomputing (Vol. 3, pp. 705-716)
-
(1998)
Proceedings of the Pacific Symposium on Biocomputing
, vol.3
, pp. 705-716
-
-
Fukuda, K.1
Tsunoda, T.2
Tamura, A.3
Takagi, T.4
-
13
-
-
0000803388
-
The population frequencies of species and the estimation of population parameters
-
Good I.J. The population frequencies of species and the estimation of population parameters. Biometrika. 40:1953;237-264
-
(1953)
Biometrika
, vol.40
, pp. 237-264
-
-
Good, I.J.1
-
16
-
-
3943106585
-
Accomplishments and challenges in literature data mining for biology
-
Hirschman L., Park J.C., Tsujii J., Wong L., Wu C.H. Accomplishments and challenges in literature data mining for biology. Bioinformatics. 18(12):2002;1553-1561
-
(2002)
Bioinformatics
, vol.18
, Issue.12
, pp. 1553-1561
-
-
Hirschman, L.1
Park, J.C.2
Tsujii, J.3
Wong, L.4
Wu, C.H.5
-
17
-
-
85145262163
-
Tuning support vector machines for biomedical named entity recognition
-
Kazama, J., Makino, T., Ohta, Y., & Tsujii, J. (2002). Tuning support vector machines for biomedical named entity recognition. In Proceedings of ACL workshop on natural language processing in the biomedical domain (pp. 1-8)
-
(2002)
Proceedings of ACL Workshop on Natural Language Processing in the Biomedical Domain
, pp. 1-8
-
-
Kazama, J.1
Makino, T.2
Ohta, Y.3
Tsujii, J.4
-
18
-
-
0034707204
-
Using BLAST for identifying gene and protein names in journal articles
-
Krauthammer M., Rzhetsky A., Morozov P., Friedman C. Using BLAST for identifying gene and protein names in journal articles. GENE. (259):2001;245-252
-
(2001)
GENE
, Issue.259
, pp. 245-252
-
-
Krauthammer, M.1
Rzhetsky, A.2
Morozov, P.3
Friedman, C.4
-
20
-
-
0041627759
-
A biological named entity recognizer
-
Narayanaswamy, M., Ravikumar, K. E., & Shanker, V. K. (2003). A biological named entity recognizer. In Proceedings of the pacific symposium on biocomputing (Vol. 8, pp. 427-438)
-
Proceedings of the Pacific Symposium on Biocomputing
, vol.8
, pp. 427-438
-
-
Narayanaswamy, M.1
Ravikumar, K.E.2
Shanker, V.K.3
-
21
-
-
0001413266
-
Toward routine automatic pathway discovery from on-line scientific text abstracts
-
Ng, S., & Wong, M. (1999). Toward routine automatic pathway discovery from on-line scientific text abstracts. In Proceedings of genome informatics (Vol. 10, pp. 104-112)
-
(1999)
Proceedings of Genome Informatics
, vol.10
, pp. 104-112
-
-
Ng, S.1
Wong, M.2
-
23
-
-
0001619859
-
High-quality protein knowledge resource: SWISS-PROT and TrEMBL
-
O'Donovan C., Martin M.J., Gattiker A., Gasteiger E., Bairoch A., Apweiler R. High-quality protein knowledge resource: SWISS-PROT and TrEMBL. Brief Bioinform. 3(3):2002;275-284
-
(2002)
Brief Bioinform
, vol.3
, Issue.3
, pp. 275-284
-
-
O'Donovan, C.1
Martin, M.J.2
Gattiker, A.3
Gasteiger, E.4
Bairoch, A.5
Apweiler, R.6
-
24
-
-
1542280156
-
The GENIA corpus: An annotated research abstract corpus in molecular biology domain
-
Ohta, T., Tateisi, Y., Kim, J., Mima, H., & Tsujii, J. (2002). The GENIA corpus: an annotated research abstract corpus in molecular biology domain. In Proceedings of the human language technology conference (pp. 73-77)
-
(2002)
Proceedings of the Human Language Technology Conference
, pp. 73-77
-
-
Ohta, T.1
Tateisi, Y.2
Kim, J.3
Mima, H.4
Tsujii, J.5
-
25
-
-
8444236771
-
Notions of correctness when evaluating protein name taggers
-
Olsson, F., Eriksson, G., Franzén, K., Asker, L., & Lidén, P. (2002). Notions of correctness when evaluating protein name taggers. In Proceedings of the 19th international conference on computational linguistics (pp. 765-771)
-
(2002)
Proceedings of the 19th International Conference on Computational Linguistics
, pp. 765-771
-
-
Olsson, F.1
Eriksson, G.2
Franzén, K.3
Asker, L.4
Lidén, P.5
-
26
-
-
18244362340
-
A multi-level text mining method to extract biological relationships
-
Palakal, M., Stephens, M., Mukhopadhyay, S., Raje, R., & Rhodes, S. (2002). A multi-level text mining method to extract biological relationships. In Proceedings of the IEEE computer society bioinformatics conference (CSB 2002) (pp. 97-108)
-
(2002)
Proceedings of the IEEE Computer Society Bioinformatics Conference (CSB 2002)
, pp. 97-108
-
-
Palakal, M.1
Stephens, M.2
Mukhopadhyay, S.3
Raje, R.4
Rhodes, S.5
-
27
-
-
0002353623
-
Detecting gene symbols and names in biological texts: A first step toward pertinent information extraction
-
Proux, D., Rechenmann, F., & Julliard, L. (1998). Detecting gene symbols and names in biological texts: a first step toward pertinent information extraction. In Proceedings of genome informatics (Vol. 9, pp. 72-80)
-
(1998)
Proceedings of Genome Informatics
, vol.9
, pp. 72-80
-
-
Proux, D.1
Rechenmann, F.2
Julliard, L.3
-
29
-
-
0002284942
-
Identifying the interaction between genes and gene products based on frequently seen verbs in MEDLINE abstracts
-
Sekimizu, T., Park, H. S., & Tsujii, J. (1998). Identifying the interaction between genes and gene products based on frequently seen verbs in MEDLINE abstracts. In Proceedings of genome informatics (Vol. 9, pp. 62-71)
-
(1998)
Proceedings of Genome Informatics
, vol.9
, pp. 62-71
-
-
Sekimizu, T.1
Park, H.S.2
Tsujii, J.3
-
30
-
-
0036678776
-
Tagging gene and protein names in biomedical text
-
Tanabe L., Wilbur J. Tagging gene and protein names in biomedical text. Bioinformatics. 18(8):2002;1124-1132
-
(2002)
Bioinformatics
, vol.18
, Issue.8
, pp. 1124-1132
-
-
Tanabe, L.1
Wilbur, J.2
-
31
-
-
0033657262
-
Automatic extraction of protein interactions from scientific abstracts
-
Thomas, J., Milward, D., Ouzounis, C., Pulman, S., & Carroll, M. (2000). Automatic extraction of protein interactions from scientific abstracts. In Proceedings of the pacific symposium on biocomputing (Vol. 5, pp. 538-549)
-
(2000)
Proceedings of the Pacific Symposium on Biocomputing
, vol.5
, pp. 538-549
-
-
Thomas, J.1
Milward, D.2
Ouzounis, C.3
Pulman, S.4
Carroll, M.5
-
32
-
-
0026187945
-
The zero-frequency problem: Estimating the probabilities of novel events in adaptive text compression
-
Witten I.H., Bell T.C. The zero-frequency problem: estimating the probabilities of novel events in adaptive text compression. IEEE Transactions on Information Theory. 37(4):1991;1085-1094
-
(1991)
IEEE Transactions on Information Theory
, vol.37
, Issue.4
, pp. 1085-1094
-
-
Witten, I.H.1
Bell, T.C.2
-
33
-
-
18444400543
-
The protein information resource: An integrated public resource of functional annotation of proteins
-
Wu C.H., Huang H., Arminski L., Castro-Alvear J., Chen Y., Hu Z., Ledley R.S., Lewis K.C., Mewes H., Orcutt B.C., Suzek B.E., Tsugita A., Vinayaka C.R., Yeh L.L., Zhang J., Barker W.C. The protein information resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Research. 30(1):2002;35-37
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 35-37
-
-
Wu, C.H.1
Huang, H.2
Arminski, L.3
Castro-Alvear, J.4
Chen, Y.5
Hu, Z.6
Ledley, R.S.7
Lewis, K.C.8
Mewes, H.9
Orcutt, B.C.10
Suzek, B.E.11
Tsugita, A.12
Vinayaka, C.R.13
Yeh, L.L.14
Zhang, J.15
Barker, W.C.16
-
34
-
-
0034062878
-
PNAD-CSS: A workbench for constructing a protein name abbreviation dictionary
-
Yoshida M., Fukuda K., Takagi T. PNAD-CSS: a workbench for constructing a protein name abbreviation dictionary. Bioinformatics. 16(2):2000;169-175
-
(2000)
Bioinformatics
, vol.16
, Issue.2
, pp. 169-175
-
-
Yoshida, M.1
Fukuda, K.2
Takagi, T.3
|