Nine new microsatellite loci for the roundnose grenadier (Coryphaenoides rupestris) with four showing cross-amplifiCation in the shortbeard grenadier (C. brevibarbis)

Conservation Genetics

Volumn 10, Issue 5, 2009, Pages 1421-1424

  White, Thomas A ^a   Stamford, Joanne ^a   Hoelzel, A Rus ^a  

^a DURHAM UNIVERSITY   (United Kingdom)

Author keywords

Coryphaenoides brevibarbis; Coryphaenoides rupestris; Dinucleotide; Microsatellites; Roundnose grenadier; Shortbeard grenadier; Tetranucleotide

Indexed keywords

ALLELE; FISH; GENETIC ANALYSIS; HETEROGENEITY; MARINE ECOSYSTEM; POLYMORPHISM;

CORYPHAENOIDES BREVIBARBIS; CORYPHAENOIDES RUPESTRIS; NEZUMIA BREVIBARBATA;

EID: 70350554417     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-008-9751-6     Document Type: Article

References (11)

1. Amos W, Hoffmann JI, Frodsham A, Zhang L, Best S, Hill AVS (2007) Automated binning of microsatellite alleles: problems and solutions. Mol Ecol Notes 7:10-14. doi:10.1111/j.1471-8286.2006.01560.x.
2. Atkinson DB (1995) The biology and fishery of roundnose grenadier (C.rupestris Gunnerus, 1765) in the North-West Atlantic. In: Hopper AG (ed) Deep-water Fisheries of the North Atlantic Oceanic Slope. Kluwer, Netherlands, pp 51-112.
3. Cohen D, Inda I, Iwamato T, Scialabba N (1990) FAO species catalogue. FAO Fish Synop 25:442.
4. Devine JA, Baker KD, Haedrich RL (2006) Deep-sea fishes qualify as endangered. Nature 439:660. doi:10.1038/439029a.
5. Fischer D, Bachmann K (1998) Microsatellite enrichment in organisms with large genomes (Allium cepa L.). Biotechniques 24:796-802.
6. Goudet J (1995) FSTAT (Version 1.2): a computer program to calculate F-statistics. J Hered 86:485-486.
7. Haedrich RL, Merrett NR (1988) Summary atlas of deep living demersal fish in the north Atlantic. J Nat Hist 22:1325-1362. doi:10.1080/00222938800770811.
8. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
9. Koslow JA, Boehlert GW, Gordon JDM, Haedrich RL, Lorance P, Parin N (2000) Continental slope and deep-sea fisheries: implications for a fragile ecosystem. ICES J Mar Sci 57:548-557. doi:10.1006/jmsc.2000.0722.
10. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular Biology. Humana Press, Totowa, pp 365-386.
11. van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535-538. doi:10.1111/j.1471-8286.2004.00684.x.