Castellaniella ginsengisoli sp. nov., a β-glucosidase-producing bacterium

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 9, 2009, Pages 2191-2194

  Kim, Myung Kyum ^a,b   Srinivasan, Sathiyaraj ^a   Kim, Yeon Ju ^a   Yang, Deok Chun ^a  

^a Kyung Hee University   (South Korea)

^b Seoul Women University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BETA GLUCOSIDASE; GENOMIC DNA; RNA 16S; UBIQUINONE; FATTY ACID; RIBOSOME DNA; UBIQUINONE 8;

ALCALIGENES; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CASTELLANIELLA DEFRAGANS; CASTELLANIELLA DENITRIFICANS; CASTELLANIELLA GINSENGISOLI; CONTROLLED STUDY; DNA CONTENT; GENE SEQUENCE; GENETIC SIMILARITY; GENOTYPE; GRAM NEGATIVE BACTERIUM; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TAXONOMY; ALCALIGENACEAE; BACTERIUM IDENTIFICATION; BIOSYNTHESIS; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DNA BASE COMPOSITION; DNA SEQUENCE; ENZYMOLOGY; GENETICS; GINSENG; ISOLATION AND PURIFICATION; KOREA; LOCOMOTION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION;

ALCALIGENACEAE; BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; NEGIBACTERIA; PANAX GINSENG;

ALCALIGENACEAE; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BETA-GLUCOSIDASE; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; KOREA; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PANAX; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; UBIQUINONE;

EID: 70350512860     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.008300-0     Document Type: Article

References (25)

1. Auling, G., Busse, H.-J., Pilz, F., Webb, L., Kneifel, H. & Claus, D. (1991). Rapid differentiation, by polyamine analysis, of Xanthomonas strains from phytopathogenic pseudomonads and other members of the class Proteobacteria interacting with plants. Int J Syst Bacteriol 41, 223-228.
2. Buck, J. D. (1982). Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44, 992-993.
3. Busse, H.-J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
4. Cappuccino, J. G. & Sherman, N. (2002). Microbiology: a Laboratory Manual, 6th edn. Menlo Park, CA: Benjamin/Cummings.
5. Collins, M. D. & Jones, D. (1981). Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol Rev 45, 316-354.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Foss, S., Heyen, U. & Harder, J. (1998). Alcaligenes defragrans sp. nov., description of four strains isolated on alkenoic monoterpenes ((+)-menthene, α-pinene, 2-carene, and α-phellandrene) and nitrate. Syst Appl Microbiol 21, 237-244.
10. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
11. Kämpfer, P., Denger, K., Cook, A. M., Lee, S.-T., Jäckel, U., Denner, E. B. M. & Busse, H.-J. (2006). Castellaniella gen. nov., to accommodate the phylogenetic lineage of Alcaligenes defragrans, and proposal of Castellaniella defragrans gen. nov., comb. nov. and Castellaniella denitrificans sp. nov. Int J Syst Evol Microbiol 56, 815-819.
12. Kim, M. K., Im, W.-T., Ohta, H., Lee, M. & Lee, S.-T. (2005). Sphingopyxis granuli sp. nov., a β-glucosidase producing bacterium in the family Sphingomonadaceae in α-4 subclass of the Proteobacteria. J Microbiol 43, 152-157.
13. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
14. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
15. Liu, Q. M., Ten, L. N., Im, W. T. & Lee, S. T. (2008). Castellaniella caeni sp. nov., a denitrifying bacterium isolated from sludge of a leachate treatment plant. Int J Syst Evol Microbiol 58, 2141-2146.
16. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
17. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
18. Saitou, N. & Nei, M. (1987). The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
20. T. J Microbiol Biotechnol 6, 68-69.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
22. Stolz, A., Bürger, S., Kuhm, A., Kämpfer, P. & Busse, H.-J. (2005). Pusillimonas noertemannii gen. nov., sp. nov., a new member of the family Alcaligenaceae that degrades substituted salicylates. Int J Syst Evol Microbiol 55, 1077-1081.
23. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
24. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
25. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.