-
1
-
-
0004270170
-
-
John Wiley and Sons, New York, NY
-
Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1992. Current protocols in molecular biology, vol.1 and 2. John Wiley and Sons, New York, NY.
-
(1992)
Current Protocols in Molecular Biology
, vol.1-2
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
2
-
-
0343528013
-
Generation of dominant selectable markers for resistance to pseudomonic acid by cloning and mutagenesis of the ileS gene from the archaeon Methanosarcina barkeri Fusaro
-
DOI 10.1128/JB.182.9.2611-2618.2000
-
Boccazzi, P., J. K. Zhang, and W. W. Metcalf. 2000. Generation of dominant selectable markers for resistance to pseudomonic acid by cloning and mutagenesis of the ileS gene from the archaeon Methanosarcina barkeri Fusaro. J. Bacteriol. 182:2611-2618. (Pubitemid 30212923)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.9
, pp. 2611-2618
-
-
Boccazzi, P.1
Zhang, J.K.2
Metcalf, W.W.3
-
3
-
-
0028097631
-
Pyruvate - A novel substrate for growth and methane formation in Methanosarcina barkeri
-
Bock, A. K., A. Kraft-Prieger, and P. Schonheit. 1994. Pyruvate - a novel substrate for growth and methane formation in Methanosarcina barkeri. Arch. Microbiol. 161:33-46.
-
(1994)
Arch. Microbiol.
, vol.161
, pp. 33-46
-
-
Bock, A.K.1
Kraft-Prieger, A.2
Schonheit, P.3
-
4
-
-
37749010878
-
Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A
-
Bose, A., and W. W. Metcalf. 2008. Distinct regulators control the expression of methanol methyltransferase isozymes in Methanosarcina acetivorans C2A. Mol. Microbiol. 67:649-661.
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 649-661
-
-
Bose, A.1
Metcalf, W.W.2
-
5
-
-
44349098671
-
Genetic analysis of the methanol- And methylamine-specific methyltransferase 2 genes of Methanosarcina acetivorans C2A
-
Bose, A., M. A. Pritchett, and W. W. Metcalf. 2008. Genetic analysis of the methanol- and methylamine-specific methyltransferase 2 genes of Methanosarcina acetivorans C2A. J. Bacteriol. 190:4017-4026.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 4017-4026
-
-
Bose, A.1
Pritchett, M.A.2
Metcalf, W.W.3
-
6
-
-
33749585561
-
Differential regulation of the three methanol methyltransferase isozymes in Methanosarcina acetivorans C2A
-
Bose, A., M. A. Pritchett, M. Rother, and W. W. Metcalf. 2006. Differential regulation of the three methanol methyltransferase isozymes in Methanosarcina acetivorans C2A. J. Bacteriol. 188:7274-7283.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 7274-7283
-
-
Bose, A.1
Pritchett, M.A.2
Rother, M.3
Metcalf, W.W.4
-
8
-
-
0035988323
-
The genome of Methanosarcina mazei: Evidence for lateral gene transfer between bacteria and archaea
-
Deppenmeier, U., A. Johann, T. Hartsch, R. Merkl, R. A. Schmitz, R. Martinez-Arias, A. Henne, A. Wiezer, S. Baumer, C. Jacobi, H. Bruggemann, T. Lienard, A. Christmann, M. Bomeke, S. Steckel, A. Bhattacharyya, A. Lykidis, R. Overbeek, H. P. Klenk, R. P. Gunsalus, H. J. Fritz, and G. Gottschalk. 2002. The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea. J. Mol. Microbiol. Biotechnol. 4:453-461.
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, pp. 453-461
-
-
Deppenmeier, U.1
Johann, A.2
Hartsch, T.3
Merkl, R.4
Schmitz, R.A.5
Martinez-Arias, R.6
Henne, A.7
Wiezer, A.8
Baumer, S.9
Jacobi, C.10
Bruggemann, H.11
Lienard, T.12
Christmann, A.13
Bomeke, M.14
Steckel, S.15
Bhattacharyya, A.16
Lykidis, A.17
Overbeek, R.18
Klenk, H.P.19
Gunsalus, R.P.20
Fritz, H.J.21
Gottschalk, G.22
more..
-
9
-
-
0037167474
-
Genomic and proteomic analyses reveal multiple homologs of genes encoding enzymes of the methanol:coenzyme M methyltransferase system that are differentially expressed in methanol- and acetate-grown Methanosarcina thermophila
-
Ding, Y. H., S. P. Zhang, J. F. Tomb, and J. G. Ferry. 2002. Genomic and proteomic analyses reveal multiple homologs of genes encoding enzymes of the methanol:coenzyme M methyltransferase system that are differentially expressed in methanol- and acetate-grown Methanosarcina thermophila. FEMS Microbiol. Lett. 215:127-132.
-
(2002)
FEMS Microbiol. Lett.
, vol.215
, pp. 127-132
-
-
Ding, Y.H.1
Zhang, S.P.2
Tomb, J.F.3
Ferry, J.G.4
-
10
-
-
0036225678
-
The genome of M. acetivorans reveals extensive metabolic and physiological diversity
-
Galagan, J. E., C. Nusbaum, A. Roy, M. G. Endrizzi, P. Macdonald, W. FitzHugh, S. Calvo, R. Engels, S. Smirnov, D. Atnoor, A. Brown, N. Allen, J. Naylor, N. Stange-Thomann, K. DeArellano, R. Johnson, L. Linton, P. McEwan, K. McKernan, J. Talamas, A. Tirrell, W. Ye, A. Zimmer, R. D. Barber, I. Cann, D. E. Graham, D. A. Grahame, A. M. Guss, R. Hedderich, C. Ingram-Smith, H. C. Kuettner, J. A. Krzycki, J. A. Leigh, W. Li, J. Liu, B. Mukhopadhyay, J. N. Reeve, K. Smith, T. A. Springer, L. A. Umayam, O. White, R. H. White, E. Conway de Macario, J. G. Ferry, K. F. Jarrell, H. Jing, A. J. Macario, I. Paulsen, M. Pritchett, K. R. Sowers, R. V. Swanson, S. H. Zinder, E. Lander, W. W. Metcalf, and B. Birren. 2002. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res. 12:532-542.
-
(2002)
Genome Res.
, vol.12
, pp. 532-542
-
-
Galagan, J.E.1
Nusbaum, C.2
Roy, A.3
Endrizzi, M.G.4
Macdonald, P.5
Fitzhugh, W.6
Calvo, S.7
Engels, R.8
Smirnov, S.9
Atnoor, D.10
Brown, A.11
Allen, N.12
Naylor, J.13
Stange-Thomann, N.14
Dearellano, K.15
Johnson, R.16
Linton, L.17
McEwan, P.18
McKernan, K.19
Talamas, J.20
Tirrell, A.21
Ye, W.22
Zimmer, A.23
Barber, R.D.24
Cann, I.25
Graham, D.E.26
Grahame, D.A.27
Guss, A.M.28
Hedderich, R.29
Ingram-Smith, C.30
Kuettner, H.C.31
Krzycki, J.A.32
Leigh, J.A.33
Li, W.34
Liu, J.35
Mukhopadhyay, B.36
Reeve, J.N.37
Smith, K.38
Springer, T.A.39
Umayam, L.A.40
White, O.41
White, R.H.42
Conway De Macario, E.43
Ferry, J.G.44
Jarrell, K.F.45
Jing, H.46
Macario, A.J.47
Paulsen, I.48
Pritchett, M.49
Sowers, K.R.50
Swanson, R.V.51
Zinder, S.H.52
Lander, E.53
Metcalf, W.W.54
Birren, B.55
more..
-
11
-
-
57449120302
-
New methods for tightly regulated gene expression and highly efficient chromosomal integration of cloned genes for Methanosarcina species
-
Guss, A. M., M. Rother, J. K. Zhang, G. Kulkarni, and W. W. Metcalf. 2008. New methods for tightly regulated gene expression and highly efficient chromosomal integration of cloned genes for Methanosarcina species. Archaea 2:193-203.
-
(2008)
Archaea
, vol.2
, pp. 193-203
-
-
Guss, A.M.1
Rother, M.2
Zhang, J.K.3
Kulkarni, G.4
Metcalf, W.W.5
-
12
-
-
0029671414
-
Methylcobalamin:coenzyme M methyltransferase isoenzymes MtaA and MtbA from Methanosarcina barkeri: Cloning, sequencing and differential transcription of the encoding genes, and functional overexpression of the mtaA gene in Escherichia coli
-
Harms, U., and R. K. Thauer. 1996. Methylcobalamin: coenzyme M methyltransferase isoenzymes MtaA and MtbA from Methanosarcina barkeri. Cloning, sequencing and differential transcription of the encoding genes, and functional overexpression of the mtaA gene in Escherichia coli. Eur. J. Biochem. 235:653-659. (Pubitemid 126423624)
-
(1996)
European Journal of Biochemistry
, vol.235
, Issue.3
, pp. 653-659
-
-
Harms, U.1
Thauer, R.K.2
-
13
-
-
20044381310
-
DNA microarray analysis of Methanosarcina mazei Gö1 reveals adaptation to different methanogenic substrates
-
Hovey, R., S. Lentes, A. Ehrenreich, K. Salmon, K. Saba, G. Gottschalk, R. P. Gunsalus, and U. Deppenmeier. 2005. DNA microarray analysis of Methanosarcina mazei Gö1 reveals adaptation to different methanogenic substrates. Mol. Genet. Genomics 273:225-239.
-
(2005)
Mol. Genet. Genomics
, vol.273
, pp. 225-239
-
-
Hovey, R.1
Lentes, S.2
Ehrenreich, A.3
Salmon, K.4
Saba, K.5
Gottschalk, G.6
Gunsalus, R.P.7
Deppenmeier, U.8
-
14
-
-
0001780722
-
Conversion of methanol and methylamines to methane and carbon dioxide
-
J. G. Ferry (ed.), Chapman & Hall, New York, NY
-
Keltjens, J. T., and G. D. Vogels. 1993. Conversion of methanol and methylamines to methane and carbon dioxide. In J. G. Ferry (ed.), Methanogenesis. Chapman & Hall, New York, NY.
-
(1993)
Methanogenesis
-
-
Keltjens, J.T.1
Vogels, G.D.2
-
15
-
-
33847369414
-
Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol
-
Li, L., Q. Li, L. Rohlin, U. Kim, K. Salmon, T. Rejtar, R. P. Gunsalus, B. L. Karger, and J. G. Ferry. 2007. Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. J. Proteome Res. 6:759-771.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 759-771
-
-
Li, L.1
Li, Q.2
Rohlin, L.3
Kim, U.4
Salmon, K.5
Rejtar, T.6
Gunsalus, R.P.7
Karger, B.L.8
Ferry, J.G.9
-
16
-
-
14844306724
-
Proteome of Methanosarcina acetivorans. Part II: Comparison of protein levels in acetate-and methanol-grown cells
-
Li, Q., L. Li, T. Rejtar, B. L. Karger, and J. G. Ferry. 2005. Proteome of Methanosarcina acetivorans. Part II: comparison of protein levels in acetate-and methanol-grown cells. J. Proteome Res. 4:129-135.
-
(2005)
J. Proteome Res.
, vol.4
, pp. 129-135
-
-
Li, Q.1
Li, L.2
Rejtar, T.3
Karger, B.L.4
Ferry, J.G.5
-
17
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu, P., C. Vogel, R. Wang, X. Yao, and E. M. Marcotte. 2007. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol. 25:117-124.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
18
-
-
33751081532
-
The Methanosarcina barkeri genome: Comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes
-
Maeder, D. L., I. Anderson, T. S. Brettin, D. C. Bruce, P. Gilna, C. S. Han, A. Lapidus, W. W. Metcalf, E. Saunders, R. Tapia, and K. R. Sowers. 2006. The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes. J. Bacteriol. 188:7922-7931.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 7922-7931
-
-
Maeder, D.L.1
Anderson, I.2
Brettin, T.S.3
Bruce, D.C.4
Gilna, P.5
Han, C.S.6
Lapidus, A.7
Metcalf, W.W.8
Saunders, E.9
Tapia, R.10
Sowers, K.R.11
-
19
-
-
0030900723
-
A genetic system for Archaea of the genus Methanosarcina: Liposome-mediated transformation and construction of shuttle vectors
-
Metcalf, W. W., J. K. Zhang, E. Apolinario, K. R. Sowers, and R. S. Wolfe. 1997. A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors. Proc. Natl. Acad. Sci. USA 94:2626-2631.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 2626-2631
-
-
Metcalf, W.W.1
Zhang, J.K.2
Apolinario, E.3
Sowers, K.R.4
Wolfe, R.S.5
-
20
-
-
0345676547
-
An anaerobic, intra-chamber incubator for growth of Methanosarcina spp. on methanol-containing solid media
-
Metcalf, W. W., J. K. Zhang, and R. S. Wolfe. 1998. An anaerobic, intra-chamber incubator for growth of Methanosarcina spp. on methanol-containing solid media. Appl. Environ. Microbiol. 64:768-770.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 768-770
-
-
Metcalf, W.W.1
Zhang, J.K.2
Wolfe, R.S.3
-
21
-
-
0023892552
-
A novel suicide vector and its use in construction of insertion mutations: Osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR
-
Miller, V. L., and J. J. Mekalanos. 1988. A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR. J. Bacteriol. 170:2575-2583.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 2575-2583
-
-
Miller, V.L.1
Mekalanos, J.J.2
-
22
-
-
0021252308
-
Association of hydrogen metabolism with unitrophic or mixotrophic growth of Methanosarcina barkeri on carbon monoxide
-
O'Brien, J. M., R. H. Wolkin, T. T. Moench, J. B. Morgan, and J. G. Zeikus. 1984. Association of hydrogen metabolism with unitrophic or mixotrophic growth of Methanosarcina barkeri on carbon monoxide. J. Bacteriol. 158:373-375.
-
(1984)
J. Bacteriol.
, vol.158
, pp. 373-375
-
-
O'Brien, J.M.1
Wolkin, R.H.2
Moench, T.T.3
Morgan, J.B.4
Zeikus, J.G.5
-
23
-
-
0028949735
-
The relationship between eukaryotic translation and mRNA stability. a short upstream open reading frame strongly inhibits translational initiation and greatly accelerates mRNA degradation in the yeast Saccharomyces cerevisiae
-
Oliveira, C. C., and J. E. McCarthy. 1995. The relationship between eukaryotic translation and mRNA stability. A short upstream open reading frame strongly inhibits translational initiation and greatly accelerates mRNA degradation in the yeast Saccharomyces cerevisiae. J. Biol. Chem. 270:8936-8943.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 8936-8943
-
-
Oliveira, C.C.1
McCarthy, J.E.2
-
24
-
-
19944424477
-
Genetic, physiological and biochemical characterization of multiple methanol methyltransferase isozymes in Methanosarcina acetivorans C2A
-
Pritchett, M. A., and W. W. Metcalf. 2005. Genetic, physiological and biochemical characterization of multiple methanol methyltransferase isozymes in Methanosarcina acetivorans C2A. Mol. Microbiol. 56:1183-1194.
-
(2005)
Mol. Microbiol.
, vol.56
, pp. 1183-1194
-
-
Pritchett, M.A.1
Metcalf, W.W.2
-
25
-
-
1642364959
-
Development of a markerless genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic archaea
-
Pritchett, M. A., J. K. Zhang, and W. W. Metcalf. 2004. Development of a markerless genetic exchange method for Methanosarcina acetivorans C2A and its use in construction of new genetic tools for methanogenic archaea. Appl. Environ. Microbiol. 70:1425-1433.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1425-1433
-
-
Pritchett, M.A.1
Zhang, J.K.2
Metcalf, W.W.3
-
26
-
-
0027952572
-
Influence of translational efficiency on the stability of the mRNA for ribosomal protein S20 in Escherichia coli
-
Rapaport, L. R., and G. A. Mackie. 1994. Influence of translational efficiency on the stability of the mRNA for ribosomal protein S20 in Escherichia coli. J. Bacteriol. 176:992-998.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 992-998
-
-
Rapaport, L.R.1
Mackie, G.A.2
-
27
-
-
0031024751
-
Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Purification, properties and encoding genes of the corrinoid protein MT1
-
Sauer, K., U. Harms, and R. K. Thauer. 1997. Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Purification, properties and encoding genes of the corrinoid protein MT1. Eur. J. Biochem. 243:670-677.
-
(1997)
Eur. J. Biochem.
, vol.243
, pp. 670-677
-
-
Sauer, K.1
Harms, U.2
Thauer, R.K.3
-
28
-
-
0033135588
-
Methanol:coenzymeMmethyltransferase from Methanosarcina barkeri - Substitution of the corrinoid harbouring subunit MtaC by free cob(I)alamin
-
Sauer, K., and R. K. Thauer. 1999. Methanol:coenzymeMmethyltransferase from Methanosarcina barkeri - substitution of the corrinoid harbouring subunit MtaC by free cob(I)alamin. Eur. J. Biochem. 261:674-681.
-
(1999)
Eur. J. Biochem.
, vol.261
, pp. 674-681
-
-
Sauer, K.1
Thauer, R.K.2
-
29
-
-
0032079887
-
Methanol:coenzyme M methyltransferase from Methanosarcina barkeri - identification of the active-site histidine in the corrinoid-harboring subunit MtaC by site-directed mutagenesis
-
Sauer, K., and R. K. Thauer. 1998. Methanol:coenzyme M methyltransferase from Methanosarcina barkeri - identification of the active-site histidine in the corrinoid-harboring subunit MtaC by site-directed mutagenesis. Eur. J. Biochem. 253:698-705.
-
(1998)
Eur. J. Biochem.
, vol.253
, pp. 698-705
-
-
Sauer, K.1
Thauer, R.K.2
-
30
-
-
0027504911
-
Disaggregation of Methanosarcina spp. and growth as single cells at elevated osmolarity
-
Sowers, K. R., J. E. Boone, and R. P. Gunsalus. 1993. Disaggregation of Methanosarcina spp. and growth as single cells at elevated osmolarity. Appl. Environ. Microbiol. 59:3832-3839.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 3832-3839
-
-
Sowers, K.R.1
Boone, J.E.2
Gunsalus, R.P.3
-
31
-
-
0020772847
-
Methyltransferases involved in methanol conversion by Methanosarcina barkeri
-
van der Meijden, P., H. J. Heythuysen, A. Pouwels, F. Houwen, C. van der Drift, and G. D. Vogels. 1983. Methyltransferases involved in methanol conversion by Methanosarcina barkeri. Arch. Microbiol. 134:238-242.
-
(1983)
Arch. Microbiol.
, vol.134
, pp. 238-242
-
-
Van Der Meijden, P.1
Heythuysen, H.J.2
Pouwels, A.3
Houwen, F.4
Van Der Drift, C.5
Vogels, G.D.6
-
32
-
-
0020623011
-
Activation and inactivation of methanol: 2-mercaptoethanesulfonic acid methyltransferase from Methanosarcina barkeri
-
van der Meijden, P., H. J. Heythuysen, H. T. Sliepenbeek, F. P. Houwen, C. van der Drift, and G. D. Vogels. 1983. Activation and inactivation of methanol: 2-mercaptoethanesulfonic acid methyltransferase from Methanosarcina barkeri. J. Bacteriol. 153:6-11.
-
(1983)
J. Bacteriol.
, vol.153
, pp. 6-11
-
-
Van Der Meijden, P.1
Heythuysen, H.J.2
Sliepenbeek, H.T.3
Houwen, F.P.4
Van Der Drift, C.5
Vogels, G.D.6
-
33
-
-
0021066544
-
Involvement of corrinoids in the methylation M (2-mercaptoethane-sulfonic acid) by methanol and enzymes from Methanosarcina barkeri
-
van der Meijden, P., L. P. J. M. Jansen, C. van der Drift, and G. D. Vogels. 1983. Involvement of corrinoids in the methylation M (2-mercaptoethane-sulfonic acid) by methanol and enzymes from Methanosarcina barkeri. FEMS Microbiol. Lett. 19:247-251.
-
(1983)
FEMS Microbiol. Lett.
, vol.19
, pp. 247-251
-
-
Van Der Meijden, P.1
Jansen, L.P.J.M.2
Van Der Drift, C.3
Vogels, G.D.4
-
34
-
-
0022552850
-
Novel regulatory mutants of the phosphate regulon in Escherichia coli K-12
-
Wanner, B. L. 1986. Novel regulatory mutants of the phosphate regulon in Escherichia coli K-12. J. Mol. Biol. 191:39-58.
-
(1986)
J. Mol. Biol.
, vol.191
, pp. 39-58
-
-
Wanner, B.L.1
-
36
-
-
0017036833
-
Titanium (III) citrate as a nontoxic oxidation-reduction buffering system for the culture of obligate anaerobes
-
Zehnder, A. J., and K. Wuhrmann. 1976. Titanium (III) citrate as a nontoxic oxidation-reduction buffering system for the culture of obligate anaerobes. Science 194:1165-1166.
-
(1976)
Science
, vol.194
, pp. 1165-1166
-
-
Zehnder, A.J.1
Wuhrmann, K.2
|