-
1
-
-
0035988323
-
The genome of Methanosarcina mazei: Evidence for lateral gene transfer between Bacteria and Archaea
-
Deppenmeier, U.; Johann, A.; Hartsch, T.; Merkl, R.; Schmitz, R. A.; Martinez-Arias, R.; Henne, A.; Wiezer, A.; Baumer, S.; Jacobi, C.; Bruggemann, H.; Lienard, T.; Christmann, A.; Bomeke, M.; Steckel, S.; Bhattacharyya, A.; Lykidis, A.; Overbeek, R.; Klenk, H. P.; Gunsalus, R. P.; Fritz, H. J.; Gottschalk, G. The genome of Methanosarcina mazei: evidence for lateral gene transfer between Bacteria and Archaea. J. Mol. Microbiol. Biotechnol. 2002, 4, (4), 453-461.
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, Issue.4
, pp. 453-461
-
-
Deppenmeier, U.1
Johann, A.2
Hartsch, T.3
Merkl, R.4
Schmitz, R.A.5
Martinez-Arias, R.6
Henne, A.7
Wiezer, A.8
Baumer, S.9
Jacobi, C.10
Bruggemann, H.11
Lienard, T.12
Christmann, A.13
Bomeke, M.14
Steckel, S.15
Bhattacharyya, A.16
Lykidis, A.17
Overbeek, R.18
Klenk, H.P.19
Gunsalus, R.P.20
Fritz, H.J.21
Gottschalk, G.22
more..
-
2
-
-
0036225678
-
The genome of M. acetivorans reveals extensive metabolic and physiological diversity
-
Galagan, J. E.; Nusbaum, C.; Roy, A.; Endrizzi, M. G.; Macdonald, P.; FitzHugh, W.; Calvo, S.; Engels, R.; Smirnov, S.; Atnoor, D.; Brown, A.; Allen, N.; Naylor, J.; Stange-Thomann, N.; DeArellano, K.; Johnson, R.; Linton, L.; McEwan, P.; McKernan, K.; Talamas, J.; Tirrell, A.; Ye, W.; Zimmer, A.; Barber, R. D.; Cann, I.; Graham, D. E.; Grahame, D. A.; Guss, A. M.; Hedderich, R.; Ingram-Smith, C.; Kuettner, H. C.; Krzycki, J. A.; Leigh, J. A.; Li, W.; Liu, J.; Mukhopadhyay, B.; Reeve, J. N.; Smith, K.; Springer, T. A.; Umayam, L. A.; White, O.; White, R. H.; de Macario, E. C.; Ferry, J. G.; Jarrell, K. F.; Jing, H.; Macario, A. J.; Paulsen, I.; Pritchett, M.; Sowers, K. R.; Swanson, R. V.; Zinder, S. H.; Lander, E.; Metcalf, W. W.; Birren, B. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res. 2002, 12, (4), 532-542.
-
(2002)
Genome Res.
, vol.12
, Issue.4
, pp. 532-542
-
-
Galagan, J.E.1
Nusbaum, C.2
Roy, A.3
Endrizzi, M.G.4
Macdonald, P.5
Fitzhugh, W.6
Calvo, S.7
Engels, R.8
Smirnov, S.9
Atnoor, D.10
Brown, A.11
Allen, N.12
Naylor, J.13
Stange-Thomann, N.14
Dearellano, K.15
Johnson, R.16
Linton, L.17
McEwan, P.18
McKernan, K.19
Talamas, J.20
Tirrell, A.21
Ye, W.22
Zimmer, A.23
Barber, R.D.24
Cann, I.25
Graham, D.E.26
Grahame, D.A.27
Guss, A.M.28
Hedderich, R.29
Ingram-Smith, C.30
Kuettner, H.C.31
Krzycki, J.A.32
Leigh, J.A.33
Li, W.34
Liu, J.35
Mukhopadhyay, B.36
Reeve, J.N.37
Smith, K.38
Springer, T.A.39
Umayam, L.A.40
White, O.41
White, R.H.42
De Macario, E.C.43
Ferry, J.G.44
Jarrell, K.F.45
Jing, H.46
Macario, A.J.47
Paulsen, I.48
Pritchett, M.49
Sowers, K.R.50
Swanson, R.V.51
Zinder, S.H.52
Lander, E.53
Metcalf, W.W.54
Birren, B.55
more..
-
3
-
-
0018127547
-
Growth and methanogenesis by Methanosarcina strain 227 on acetate and methanol
-
Smith, M. R.; Mah, R. A. Growth and methanogenesis by Methanosarcina strain 227 on acetate and methanol. Appl. Environ. Microbiol. 1978, 36, 870-879.
-
(1978)
Appl. Environ. Microbiol.
, vol.36
, pp. 870-879
-
-
Smith, M.R.1
Mah, R.A.2
-
4
-
-
0345194051
-
Utilization of trimethylamine and other N-methyl compounds for growth and methane formation by Methanosarcina barkeri
-
Hippe, H.; Caspari, D.; Fiebig, K.; Gottschalk, G., Utilization of trimethylamine and other N-methyl compounds for growth and methane formation by Methanosarcina barkeri. Proc. Natl. Acad. Sci. U.S.A. 1979, 76, 494-498.
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, pp. 494-498
-
-
Hippe, H.1
Caspari, D.2
Fiebig, K.3
Gottschalk, G.4
-
5
-
-
0001477145
-
Methanosarcina acetivorans sp. nov., an acetotrophic methane-producing bacterium isolated from marine sediments
-
Sowers, K. R.; Baron, S. F.; Ferry, J. G. Methanosarcina acetivorans sp. nov., an acetotrophic methane-producing bacterium isolated from marine sediments. Appl. Environ. Microbiol. 1984, 47, 971-978.
-
(1984)
Appl. Environ. Microbiol.
, vol.47
, pp. 971-978
-
-
Sowers, K.R.1
Baron, S.F.2
Ferry, J.G.3
-
6
-
-
0027433047
-
Transcriptional regulation of the carbon monoxide dehydrogenase gene (cdhA) in Methanosarcina thermophila
-
Sowers, K. R.; Thai, T. T.; Gunsalus, R. P. Transcriptional regulation of the carbon monoxide dehydrogenase gene (cdhA) in Methanosarcina thermophila. J. Biol. Chem. 1993, 268, 23172-23178.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 23172-23178
-
-
Sowers, K.R.1
Thai, T.T.2
Gunsalus, R.P.3
-
7
-
-
0028922177
-
Transcriptional regulation of the phosphotransacetylase-encoding and acetate kinase-encoding genes (pta and ack) from Methanosarcina thermophila
-
Singh-Wissmann, K.; Ferry, J. G. Transcriptional regulation of the phosphotransacetylase-encoding and acetate kinase-encoding genes (pta and ack) from Methanosarcina thermophila. J. Bacteriol. 1995, 177, 1699-1702.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1699-1702
-
-
Singh-Wissmann, K.1
Ferry, J.G.2
-
8
-
-
0025213114
-
Protein content and enzyme activities in methanol- and acetate-grown Methanosarcina thermophila
-
Jablonski, P. E.; DiMarco, A. A.; Bobik, T. A.; Cabell, M. C.; Ferry, J. G. Protein content and enzyme activities in methanol- and acetate-grown Methanosarcina thermophila. J. Bacteriol. 1990, 172, 1271-1275.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 1271-1275
-
-
Jablonski, P.E.1
DiMarco, A.A.2
Bobik, T.A.3
Cabell, M.C.4
Ferry, J.G.5
-
9
-
-
0037167474
-
Genomic and proteomic analyses reveal multiple homologues of genes encoding enzymes of the methanol: Coenzyme M methyltransferase system that are differentially expressed in methanol- and acetate-grown Methanosarcina thermophila
-
Ding, Y. H.; Zhang, S. P.; Tomb, J. F.; Ferry, J. G. Genomic and proteomic analyses reveal multiple homologues of genes encoding enzymes of the methanol: coenzyme M methyltransferase system that are differentially expressed in methanol- and acetate-grown Methanosarcina thermophila. FEMS Microbiol. Lett. 2002, 215(1), 127-132.
-
(2002)
FEMS Microbiol. Lett.
, vol.215
, Issue.1
, pp. 127-132
-
-
Ding, Y.H.1
Zhang, S.P.2
Tomb, J.F.3
Ferry, J.G.4
-
10
-
-
0034633401
-
2) control on the expression of flagella in the hyperthermophilic strictly hydrogenotrophic methanarchaeaon Methanococcus jannaschii
-
2) control on the expression of flagella in the hyperthermophilic strictly hydrogenotrophic methanarchaeaon Methanococcus jannaschii. Proc. Natl. Acad. Sci. U.S.A. 2000, 97(21), 11522-11527.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, Issue.21
, pp. 11522-11527
-
-
Mukhopadhyay, B.1
Johnson, E.F.2
Wolfe, R.S.3
-
11
-
-
3142596395
-
A proteomic determination of cold adaptation in the antarctic archaeon, Methanococcoides burtonii
-
Goodchild, A.; Saunders: N. F. W.; Ertan, H.; Raftery, M.; Guilhaus, M.; Curmi, P. M. G.; Cavicchioli, R. A proteomic determination of cold adaptation in the antarctic archaeon, Methanococcoides burtonii. Mol. Microbiol. 2004, 53, 309-321.
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 309-321
-
-
Goodchild, A.1
Saunders, N.F.W.2
Ertan, H.3
Raftery, M.4
Guilhaus, M.5
Curmi, P.M.G.6
Cavicchioli, R.7
-
12
-
-
14844326682
-
The proteome of Methanosarcina acetivorans. Part I, an expanded view of the biology of the cell
-
Li, Q.; Li, L.; Rejtar, T.; Karger, B. L.; Ferry, J. G. The proteome of Methanosarcina acetivorans. Part I, an expanded view of the biology of the cell. J. Proteome Res. 2004, 4, 112-128.
-
(2004)
J. Proteome Res.
, vol.4
, pp. 112-128
-
-
Li, Q.1
Li, L.2
Rejtar, T.3
Karger, B.L.4
Ferry, J.G.5
-
13
-
-
0041589301
-
Proteomic consequences of a human mitochondrial tRNA mutation beyond the frame of mitochondrial translation
-
Tryoen-Toth, P.; Richert, S.; Sohm, B.; Mine, M.; Marsac, C.; Van Dorsselaer, A.; Leize, E.; Florentz, C. Proteomic consequences of a human mitochondrial tRNA mutation beyond the frame of mitochondrial translation. J. Biol. Chem. 2003, 278(27), 24314-24323.
-
(2003)
J. Biol. Chem.
, vol.278
, Issue.27
, pp. 24314-24323
-
-
Tryoen-Toth, P.1
Richert, S.2
Sohm, B.3
Mine, M.4
Marsac, C.5
Van Dorsselaer, A.6
Leize, E.7
Florentz, C.8
-
14
-
-
14844330416
-
-
http://www.tigr.org.
-
-
-
-
16
-
-
0242280092
-
O ATP synthase comprising nine subunits from the hyperthermophile Methanococcus jannaschii
-
O ATP synthase comprising nine subunits from the hyperthermophile Methanococcus jannaschii. Extremophiles 2003, 7(3), 249-257.
-
(2003)
Extremophiles
, vol.7
, Issue.3
, pp. 249-257
-
-
Lingl, A.1
Huber, H.2
Stetter, K.O.3
Mayer, F.4
Kellermann, J.5
Muller, V.6
-
17
-
-
0034019423
-
In situ reverse transcription-PCR for monitoring gene expression in individual Methanosarcina mazei S-6 cells
-
Lange, M.; Tolker-Nielsen, T.; Molin, S.; Ahring, B. K. In situ reverse transcription-PCR for monitoring gene expression in individual Methanosarcina mazei S-6 cells. Appl Environ Microbiol 2000, 66(5), 1796-1800.
-
(2000)
Appl Environ Microbiol
, vol.66
, Issue.5
, pp. 1796-1800
-
-
Lange, M.1
Tolker-Nielsen, T.2
Molin, S.3
Ahring, B.K.4
-
18
-
-
0037045396
-
Effect of heat stress on promoter binding by transcription factors in the cytosol of the archaeon Methanosarcina mazeii
-
De Biase, A.; Macario, A. J.; Conway de Macario, E. Effect of heat stress on promoter binding by transcription factors in the cytosol of the archaeon Methanosarcina mazeii. Gene 2002, 282(1-2), 189-197.
-
(2002)
Gene
, vol.282
, Issue.1-2
, pp. 189-197
-
-
De Biase, A.1
Macario, A.J.2
Conway De Macario, E.3
-
19
-
-
0028909379
-
Archaeal grpE: Transcription in two different morphologic stages of Methanosarcina mazei and comparison with dnaK and dnaJ
-
Conway De Macario, E.; Clarens, M.; Macario, A. J. Archaeal grpE: transcription in two different morphologic stages of Methanosarcina mazei and comparison with dnaK and dnaJ. J. Bacteriol. 1995, 177(3), 544-550.
-
(1995)
J. Bacteriol.
, vol.177
, Issue.3
, pp. 544-550
-
-
Conway De Macario, E.1
Clarens, M.2
Macario, A.J.3
-
20
-
-
0034681155
-
NifS-directed assembly of a transient [2Fe-2S] cluster within the NifU protein
-
Yuvaniyama, P.; Agar, J. N.; Cash, V. L.; Johnson, M. K.; Dean, D. R. NifS-directed assembly of a transient [2Fe-2S] cluster within the NifU protein. Proc. Natl. Acad. Sci. U.S.A. 2000, 97(2), 599-604.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, Issue.2
, pp. 599-604
-
-
Yuvaniyama, P.1
Agar, J.N.2
Cash, V.L.3
Johnson, M.K.4
Dean, D.R.5
-
21
-
-
0037397764
-
Formation of iron-sulfur clusters in bacteria: An emerging field in bioinorganic chemistry
-
Frazzon, J.; Dean, D. R. Formation of iron-sulfur clusters in bacteria: an emerging field in bioinorganic chemistry. Curr. Opin. Chem. Biol. 2003, 7(2), 166-173.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, Issue.2
, pp. 166-173
-
-
Frazzon, J.1
Dean, D.R.2
-
22
-
-
0030047955
-
Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227
-
Chien, Y. T.; Zinder, S. H. Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227. J. Bacteriol. 1996, 178, 143-148.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 143-148
-
-
Chien, Y.T.1
Zinder, S.H.2
-
23
-
-
0033988272
-
Acetylserine sulfhydrylase from Methanosarcina thermophila
-
Borup, B.; Ferry, J. G. O.-Acetylserine sulfhydrylase from Methanosarcina thermophila. J. Bacteriol. 2000, 182(1), 45-50.
-
(2000)
J. Bacteriol.
, vol.182
, Issue.1
, pp. 45-50
-
-
Borup, B.1
Ferry, J.G.O.2
-
24
-
-
0034663994
-
Cysteine biosynthesis in the Archaea: Methanosarcina thermophila utilizes O-acetylserine sulfhydrylase
-
Borup, B.; Ferry, J. G. Cysteine biosynthesis in the Archaea: Methanosarcina thermophila utilizes O-acetylserine sulfhydrylase. FEMS Microbiol. Lett. 2000, 189, 205-210.
-
(2000)
FEMS Microbiol. Lett.
, vol.189
, pp. 205-210
-
-
Borup, B.1
Ferry, J.G.2
-
25
-
-
0342514827
-
Cysteine biosynthesis in the archaeon Methanosarcina barkeri by acquired bacterial genes?
-
Kitabatake, M.; So, M. W.; Tumbula, D. L.; Soll, D. Cysteine biosynthesis in the archaeon Methanosarcina barkeri by acquired bacterial genes? J. Bacteriol. 2000, 182(1), 143-145.
-
(2000)
J. Bacteriol.
, vol.182
, Issue.1
, pp. 143-145
-
-
Kitabatake, M.1
So, M.W.2
Tumbula, D.L.3
Soll, D.4
-
26
-
-
0034614443
-
Reaction of the desulfoferrodoxin from Desulfoarculus baarsii with superoxide anion. Evidence for a superoxide reductase activity
-
Lombard, M.; Fontecave, M.; Touati, D.; Niviere, V. Reaction of the desulfoferrodoxin from Desulfoarculus baarsii with superoxide anion. Evidence for a superoxide reductase activity. J. Biol. Chem. 2000, 275(1), 115-121.
-
(2000)
J. Biol. Chem.
, vol.275
, Issue.1
, pp. 115-121
-
-
Lombard, M.1
Fontecave, M.2
Touati, D.3
Niviere, V.4
-
27
-
-
0035119328
-
Five-gene cluster in Clostridium thermoaceticum consisting of two divergent operons encoding rubredoxin oxidoreductase-rubredoxin and rubrerythrin-type A flavoprotein-high-molecular-weight rubredoxin
-
Das, A.; Coulter, E. D.; Kurtz, D. M.; Ljungdahl, L. G. Five-gene cluster in Clostridium thermoaceticum consisting of two divergent operons encoding rubredoxin oxidoreductase-rubredoxin and rubrerythrin-type A flavoprotein-high-molecular-weight rubredoxin. J. Bacteriol. 2001, 183(5), 1560-1567.
-
(2001)
J. Bacteriol.
, vol.183
, Issue.5
, pp. 1560-1567
-
-
Das, A.1
Coulter, E.D.2
Kurtz, D.M.3
Ljungdahl, L.G.4
-
28
-
-
0346340119
-
Oxygen and anaerobes
-
Ljungdahl, L. G., Adams, M. W., Barton, L. L., Ferry, J. G., Johnson, M. K., Eds.; Springer-Verlag: New York
-
Kurtz, D. M. Oxygen and anaerobes. In Biochemistry and Physiology of Anaerobic Bacteria; Ljungdahl, L. G., Adams, M. W., Barton, L. L., Ferry, J. G., Johnson, M. K., Eds.; Springer-Verlag: New York, 2003; pp 128-142.
-
(2003)
Biochemistry and Physiology of Anaerobic Bacteria
, pp. 128-142
-
-
Kurtz, D.M.1
-
29
-
-
0032102174
-
A family of flavoproteins in the domains Archaea and Bacteria
-
Wasserfallen, A.; Ragettli, S.; Jouanneau, Y.; Leisinger, T. A family of flavoproteins in the domains Archaea and Bacteria. Eur. J. Biochem. 1998, 254(2), 325-332.
-
(1998)
Eur. J. Biochem.
, vol.254
, Issue.2
, pp. 325-332
-
-
Wasserfallen, A.1
Ragettli, S.2
Jouanneau, Y.3
Leisinger, T.4
-
30
-
-
0347622759
-
Flavin mononucleotide-binding flavoprotein family in the domain Archaea
-
Ding, Y. H.; Ferry, J. G. Flavin mononucleotide-binding flavoprotein family in the domain Archaea. J. Bacteriol. 2004, 186, (1), 90-97.
-
(2004)
J. Bacteriol.
, vol.186
, Issue.1
, pp. 90-97
-
-
Ding, Y.H.1
Ferry, J.G.2
-
31
-
-
0034987011
-
General stress response of Bacillus subtilis and other bacteria
-
Hecker, M.; Volker, U. General stress response of Bacillus subtilis and other bacteria. Adv. Microb. Physiol. 2001, 44, 35-91.
-
(2001)
Adv. Microb. Physiol.
, vol.44
, pp. 35-91
-
-
Hecker, M.1
Volker, U.2
-
32
-
-
0038013951
-
The bacterial universal stress protein: Function and regulation
-
Kvint, K.; Nachin, L.; Diez, A.; Nystrom, T. The bacterial universal stress protein: function and regulation. Curr. Opin. Microbiol. 2003, 6(2), 140-145.
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, Issue.2
, pp. 140-145
-
-
Kvint, K.1
Nachin, L.2
Diez, A.3
Nystrom, T.4
-
33
-
-
0032431024
-
Structure-based assignment of the biochemical function of a hypothetical protein: A test case of structural genomics
-
Zarembinski, T. I.; Hung, L. W.; Mueller-Dieckmann, H. J.; Kim, K. K.; Yokota, H.; Kim, R.; Kim, S. H. Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics. Proc. Natl. Acad. Sci. U.S.A. 1998, 95(26), 15189-15193.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, Issue.26
, pp. 15189-15193
-
-
Zarembinski, T.I.1
Hung, L.W.2
Mueller-Dieckmann, H.J.3
Kim, K.K.4
Yokota, H.5
Kim, R.6
Kim, S.H.7
-
34
-
-
0042243691
-
Universal stress proteins and Mycobacterium tuberculosis
-
O'Toole, R.; Williams, H. D. Universal stress proteins and Mycobacterium tuberculosis. Res. Microbiol. 2003, 154(6), 387-392.
-
(2003)
Res. Microbiol.
, vol.154
, Issue.6
, pp. 387-392
-
-
O'Toole, R.1
Williams, H.D.2
-
35
-
-
0029784331
-
Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: Gene sequence, enzyme purification, and protein characterization
-
de Souza, M. L.; Sadowsky, M. J.; Wackett, L. P. Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: gene sequence, enzyme purification, and protein characterization. J. Bacteriol. 1996, 178(16), 4894-4900.
-
(1996)
J. Bacteriol.
, vol.178
, Issue.16
, pp. 4894-4900
-
-
De Souza, M.L.1
Sadowsky, M.J.2
Wackett, L.P.3
-
36
-
-
0037064015
-
Subunit exchange, conformational stability, and chaperone-like function of the small heat shock protein 16.5 from Methanococcus jannaschii
-
Bova, M. P.; Huang, Q. L.; Ding, L. L.; Horwitz, J. Subunit exchange, conformational stability, and chaperone-like function of the small heat shock protein 16.5 from Methanococcus jannaschii. J. Biol. Chem. 2002, 277(41), 38468-38475.
-
(2002)
J. Biol. Chem.
, vol.277
, Issue.41
, pp. 38468-38475
-
-
Bova, M.P.1
Huang, Q.L.2
Ding, L.L.3
Horwitz, J.4
|