Initial excited-state structural dynamics of uracil from resonance Raman spectroscopy are different from those of thymine (5-methyluracil)

Journal of Physical Chemistry B

Volumn 113, Issue 43, 2009, Pages 14336-14342

  Yarasi, Soujanya ^a   Ng, Susan ^a   Loppnow, Glen R ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION; EXCITED STATES; HYDROCARBONS; HYDROGEN; NUCLEIC ACIDS; RAMAN SCATTERING; RAMAN SPECTROSCOPY; RESONANCE; RNA; STRUCTURAL DYNAMICS;

A-CARBON; AQUEOUS SOLUTIONS; AT-WAVELENGTH; BOND LENGTHENING; ENERGY ABSORPTION BAND; IN-PLANE; METHYL GROUP; NUCLEOBASES; PHOTOPRODUCTS; PYRAMIDALIZATION; RESONANCE RAMAN; RESONANCE RAMAN EXCITATION PROFILES; RESONANCE RAMAN SPECTROSCOPY; STRETCHING MODES; STRUCTURAL CHANGE; TIME-DEPENDENT WAVES; UV PHOTOCHEMISTRY; UV RESONANCE RAMAN SPECTRA; VIBRATIONAL MODES; [CARBONYL;

DYNAMICS;

EID: 70350424105     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp9053378     Document Type: Article

References (49)

1. Lehninger, A. L.; Biochemistry; Worth Publications: New York, 1975; Vol.2, pp 309-333.
2. Ruzsicska, B. P.; Lemaire, D. G. E. In CRC Handbook of Organic Photochemistry and Photobiology; Horspool, W. H., Song, P.-S., Eds.; CRC Press: New York, 1995; pp 1289-1317.
3. Brown, I. H.; Freeman, K. B.; Johns, H. E. Mol. Biol. 1966,15, 640-662.
4. (a) Greenstock, C. L.; Brown, I. H.; Hunt, J. W.; Johns, H. E. Biochem. Biophys. Res. Commun. 1967, 27, 431-436.
5. (b) Burr, J. G.; Park, E. H. Radiat. Res. 1967, 31, 547-550.
6. Mitchell, D. L. In CRC Handbook of Organic Photochemistry and Photobiology; Horspool, W. H., Song, P.-S., Eds.; CRC Press: New York, 1995; pp 1326-1331.
7. Begley, T. J.; Samson, L. D. Nature 2003, 421, 795-796.
8. (a) Kang, H.; Taek Lee, K.; Jung, B; Jae Ko, Y.; Keun Kim, S. J. Am. Chem. Soc. 2002, 124, 12958-12959.
9. (b) He, Y.; Wu, C.; Kong, W. J. Phys. Chem. A 2003, 107, 5145-5148.
10. Pecourt, J.-M. L.; Peon, J.; Kohler, B. J. Am. Chem. Soc. 2000, 122, 9348-9349.
11. Onidas, D.; Markovitsi, D.; Marguet, S.; Sharonov, A.; Gustavsson, T. J. Phys. Chem. B 2002, 106, 11367-11374.
12. Peon, J.; Zewail, A. H. Chem. Phys. Lett. 2001, 348, 255-262.
13. Schreier, W. J.; Schrader, T. E.; Koller, F. O.; Gilch, P; CrespoHemandez, C. E.; Swaminathan, V. N.; Carell, T.; Zinth, W.; Kohler, B. Science 2007, 315, 625-629.
14. (a) Myers, A. B.; Mathies, R. A. In Biological Applications of Raman Spectroscopy, Resonance Raman Spectra of Polyenes and Aromatics; Spiro, T. G., Ed.; Wiley-Interscience: New York, 1987; Vol.2, pp 1-58.
15. (b) Myers, A. B. Excited Electronic State Properties from. Ground-State Resonance Raman Intensities. In Laser Techniques in Chemistry; Myers, A. B., Rizzo, T. R., Eds.; Wiley: New York, 1995; pp 325-384.
16. (c) Kelley, A. M. J. Phys. Chem. A 1999, 103, 6891-6903.
17. (a) Fodor, A. P. A.; Rava, R. P.; Hays, T. R.; Spiro, T. G. J. Chem. Chem. Soc. 1985, 107, 1520-1529.
18. (b) Fodor, S. P. A.; Spiro, T. G. J. Chem. Chem. Soc. 1986, 108, 3198-3205.
19. (c) Perno, J. R.; Grygon, C. A.; Spiro, T. G. J. Phys. Chem. 1989, 93, 5672-5678.
20. (a) Kubasek, W. L.; Hudson, B.; Peticolas, W. L. Proc. Natl. Acad. Sci, U.S.A. 1985, 82, 2369-2373.
21. (b) Blazej, D.; Peticolas, W. L. J. Chem. Phys. 1980, 72, 3134-3142.
22. (c) Peticolas, W. L.; Blazej, D. C. Chem. Phys. Lett. 1979, 63, 604-608.
23. (a) Yarasi, S.; Brost, P.; Loppnow, G. R. J. Phys. Chem. A 2007, 111, 5130-5135.
24. (b) Billinghurst, B. E.; Yeung, R.; Loppnow, G. R. J. Phys. Chem. A 2006, 110, 6185-6191
25. (c) Billinghurst, B. E.; Loppnow, G. R. J. Phys. Chem. A 2006, 110, 2353-2359
26. (a) Chinsky, L.; Laigle, A.; Peticolas, W. L.; Turpin, P.-Y. J. Chem. Phys. 1982, 76, 1-5.
27. (b) Peticolas, W. L.; Rush III, T. J. Comput. Chem. 1995, 16, 1261-1270.
28. (c) Rush III, T.; Peticolas, W. L. J. Phys. Chem. 1995, 99, 14647-14658.
29. Loppnow, G. R.; Fraga, E. J. Chim. Chem. Soc 1997, 119, 895-905.
30. Mathies, R. A.; Oseroff, A. R.; Stryer, L. Proc. Natl. Acad Sci. U.S.A. 1976, 73, 1-5.
31. Dudik, J. M.; Johnson, C. R.; Asher, S. A. J. Chem. Phys. 1985, 82, 1732-1740.
32. Lee, S.-Y.; Heller, E. J. J. Chem. Phys. 1979, 71, 4777-4788.
33. Mukamel, S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press: New York, 1995.
34. Li, B; Johnson, A. E.; Mukamel, S.; Myers, A. B. J. Am. Chem. Soc. 1994, 116, 11039-11047.
35. Shoute, L. C. T.; Loppnow, G. R. J. Chem. Phys. 2002, 117, 842-850.
36. Yarasi, S.; Billinghurst, B. E.; Loppnow, G. R. J. Raman Spectrosc 2007,38,1117-1126.
37. Nishimura, Y.; Tsuboi, M.; Kato, S.; Morokuma, K. J. Am. Chem. Soc. 1981, 103, 1354-1358.
38. Aida, M.; Kaneko, M.; Durpuis, M.; Ueda, T.; Ushizawa, K.; Ito, G.; Kumakura, A.; Tsuboi, M. Spectrochim. Acta A 1997, 53, 393-407.
39. (a) Barnes, A. J.; Stuckey, M. A.; Gall, L. L. Spectrochim. Acta A 1984,40, 419-431.
40. (b) Toyama, A.; Takeuchi, H.; Harada, I. J. Mol. Struct. 1991, 242, 87-98.
41. (c) Zhang, S. L.; Michaelian, K. H.; Loppnow, G. R. J. Phys. Chem. A 1998, 102, 461-470.
42. (a) Tsuboi, M.; Takahushi, S.; Harada, I. In Physico-Chemical Properties of Nucleic Acids; Duchesne, J., Ed.; Academic Press: New York, 1973; Vol.2, pp 91-145.
43. (b) Susi, H.; Ard, J. S. Spectrochim. Acta A 1971, 27, 1549-1562.
44. Lorentzon, J.; Fülscher, M. P.; Roos, B. O. J. Am. Chem. Soc. 1995, 117, 9265-9273.
45. Palings, I.; Van den Berg, M. M. F.; Lugtenburg, J.; Mathies, R. A. Biochemistry 1989, 28, 1498-1507.
46. (a) Shishkin, O. V.; Gorb, L.; Leszczynski, J. Int. J. Mol. Sci. 2000, 1, 17-27.
47. (b) Shukla, M. K.; Leszczynski, J. J. Phys. Chem. A 2002, 106, 8642-8650.
48. (c) Gaigot, M.-P.; Ghomi, M. J. Phys. Chem. B 2001, 105, 5007-5017.
49. Beyere, L.; Arboleda, P.; Monga, V.; Loppnow, G. R. Can. J. Chem. 2004, 82, 1092-1101.