Genetic analysis of Porphyra yezoensis using microsatellite markers

Plant Molecular Biology Reporter

Volumn 27, Issue 4, 2009, Pages 496-502

  Kong, Fanna ^a   Mao, Yunxiang ^a   Yang, Hui ^a   Qu, Haijun ^b   Yan, Xinghong ^c   Wang, Li ^a  

^a OCEAN UNIVERSITY OF CHINA   (China)

^b QINGDAO UNIVERSITY   (China)

^c SHANGHAI OCEAN UNIVERSITY   (China)

Author keywords

Genetic analysis; Microsatellite markers; Microsatellite enriched library; Porphyra yezoensis Ueda; Simple sequence repeats

Indexed keywords

EUKARYOTA; PORPHYRA; PORPHYRA YEZOENSIS;

EID: 70350416812     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-009-0101-8     Document Type: Article

References (35)

1. Collevatti RG, Grattapaglia D, Hay JD (2001) Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite loci. Mol Ecol 10:349-356. doi:10.1046/j.1365-294x.2001.01226.x.
2. Dai JX, Bao ZM, Tang YL, Liu WS (1988) Studies on isolation of Porphyra thalli with enzymes and cell cultivation. Chin J Biotechnol 4:127-133 In Chinese.
3. Edwards KJ, Barker JHA, Daly A, Jones C, Karp A (1996) Microsatellite libraries enriched for several microsatellite sequences in plants. Biotechniques 20:758-760.
4. Fang ZX, Dai JX, Tang YL, Liu WS, Bao ZM (1986) Isolation on the vegetative cells of Porphyra yezoensis Ueda with enzymes and its application in aquaculture. Mark Sci 10(3):46-47 in Chinese with English Abstract.
5. Flandez-Galvez H, Ford R, Pang EC, Taylor PW (2003) An intraspecific linkage map of the chickpea (Cicer arietinum L.) genome based on sequence tagged microsatellite site and resistance gene analog markers. Theor Appl Genet 106:1447-1456.
6. Fujita Y, Saito M (1990) Protoplast isolation and fusion in Porphyra (Bangiales, Rhodophyta). Hydrobiologia 204:161-166. doi:10.1007/BF00040228.
7. Gaitan-Solis E, Duque MC, Edwards KJ, Tohme J (2002) Microsatellite repeats in common bean (Phaseolus vulgaris): isolation, characterization, and cross-species amplification in Phaseolus ssp. Crop Sci 42:2128-2136.
8. Gupta PK, Varshnney RK (2000) The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113:163-185. doi:10.1023/A:1003910819967.
9. Hui M, Bao ZM, Zhan AB, Lu W, Chang D, Hu JJ (2006) Ten polymorphic dinucleotide microsatellite markers of the noble scallop Chlamys nobilis. Mol Ecol Notes 6:1033-1035. doi:10.1111/j.1471-8286.2006.01420.x.
10. Lemes MR, Gribel R, Proctor J, Grattapaglia D (2003) Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservation. Mol Ecol 12:2875-2883. doi:10.1046/j.1365-294X.2003.01950.x.
11. Lowe AJ, Moule C, Trick M, Edwards KJ (2004) Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor Appl Genet 108:1103-1112. doi:10.1007/s00122-003-1522-7.
12. Mitman GG, van Der Meer JP (1994) Meiosis, blade development, and sex determination in Porphyra purpurea (Rhodophyta). J Phycol 30:147-159. doi:10.1111/j.0022-3646.1994.00147.x.
13. Mizukami Y, Okauchi M, Kito H, Ishimoto S, Ishida T, Fuseya M (1995) Culture and development of electrically fused protoplasts from red marine algae, Porphyra yezoensis and P. suborbiculata. Aquaculture 132:361-367. doi:10.1016/0044-8486(95)93662-T.
14. Mizukami Y, Kito H, Kunimoto M, Kobayashi M (2000) Cloning and characterization of G+C-rich, highly repeated DNA sequences from Porphyra yezoensis (laver), Rhodophyta. J Appl Phycol 12:131-138. doi:10.1023/A:1008176409864.
15. Mumford TF, Miura A (1988) Porphyra as food: cultivation and economics. In: Lemby CA, Walland JR (eds) Algae and human affairs. Cambridge University Press, Cambridge, pp 87-117.
16. Ohme M, Miura A (1988) Tetrad analysis in conchospore germlings of Porphyra yezoensis (Rhodophyta, Bangiales). Plant Sci 57:135-140. doi:10.1016/0168-9452(88)90079-9.
17. Patricia SR, Tulio CL, Rodrigo LT, Gláucia Salles CB, José AB, Márcio EF (2004) Development of microsatellite markers from an enriched genomic library for genetic analysis of melon (Cucumis melo L.). BMC Plant Biol 4:1-14. doi:10.1186/1471-2229-4-1.
18. Riaz S, Dangl GS, Edwards KJ, Meredith CP (2004) A microsatellite marker based framework linkage map of Vitis vinifera L. Theor Appl Genet 108:864-872. doi:10.1007/s00122-003-1488-5.
19. Rosane GC, Rosana VB, Dario G (1999) Development and characterization of microsatellite markers for genetic analysis of a Brazilian endangered tree species Caryocar brasiliense. Heredity 83:748-756.
20. Sato M, Kawamata K, Zaslavskaya N, Nakamura A, Ohta T, Nishikiori T, Brykov V, Nagashima K (2005) Development of microsatellite markers for Japanese Scallop (Mizuhopecten yessoensis) and their application to a population genetic study. Mar Biotechnol 7:713-728. doi:10.1007/s10126-004-0127-8.
21. Schwenkenbecher JM, Kaplan R (2007) Development and characterization of microsatellite markers for the canine hookworm, Ancylostoma caninum. Parasitol Res 100:1015-1021.
22. Sethy NK, Shokeen B, Edwards KJ, Bhatia S (2006) Development of microsatellite markers and analysis of intraspecific genetic variability in chickpea (Cicer arietinum L.). Theor Appl Genet 112:1416-1428. doi:10.1007/s00122-006-0243-0.
23. Sun JW, Liu T, Guo BT, Jin DM, Weng ML, Feng YB, Xu P, Duan DL, Wang B (2006) Development of SSR primers from EST sequences and their application in germplasm identification of Porphyra lines (Rhodophyta). Eur J Phycol 41:329-336. doi:10.1080/09670260600740906.
24. Toth G, Gaspsri Z, Jurka J (2000) Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res 10:967-981. doi:10.1101/gr.10.7.967.
25. von Stackelberg M, Rensing SA, Reski R (2006) Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites. BMC Plant Biol 6:1-14. doi:10.1186/1471-2229-6-1.
26. Wattier RA, Prodohl PA, Maggs CA (2000) DNA isolation protocol for red seaweed (Rhodophyta). Plant Mol Biol Rep 18:275-281. doi:10.1007/BF02823999.
27. Winter P, Benko-Iseppon AM, Huttel B, Ratnaparkhe M, Tullu A, Sonnante G, Pfaff T, Tekeoglu M, Santara D, Sant VJ, Rajesh PN, Kahl G, Muehlbauer FJ (2000) A linkage map of chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum × C. reticulatum cross: localization of resistance genes for fusarium wilt races 4 and 5. Theor Appl Genet 101:1155-1163. doi:10.1007/s001220051592.
28. Yan XH, Fujita Y, Aruga Y (2000) Induction and characterization of pigmentation mutants in Porphyra yezoensis (Bangiales Rhodophyta). J Appl Phycol 12:69-81. doi:10.1023/A:1008129119065.
29. Yan XH, Liang ZQ, Song WL, Huang J, Ma P, Aruga YC (2005) Induction and isolation of artificial pigmentation mutants in Porphyra haitanensis Chang et Zheng (Bangiales, Rhodophyta). J Fish China 29(2):166-172 In Chinese with English abstract.
30. Yeh FC, Boyle TJB (1997) Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belg J Bot 129:157.
31. Yoshida T, Notoya M, Kikuchi N, Miyata M (1997) Catalogue of species of Porphyra in the world, with special reference to the type locality and bibliography. Nat Hist Res 3(Special Issue):5-18.
32. Yuan ZL, Huang ZH, Shen SD, Chen DP, Zhu JY, Xu P (2006) Inter-simple sequence repeat (ISSR) analysis of five cultivars in Porphyra yezoensis. Mark Sci 30:9-14 In Chinese with English abstract.
33. Yuzuru M, Hitoshi K, Masahiko K (2000) Cloning and characterization of G+C-rich, highly repeated DNA sequences from Porphyra yezoensis (laver), Rhodophyta. J Appl Phycol 12:131-138.
34. Zhang L, Yuan D, Yu S, Li Z, Cao Y, Miao Z, Qian H, Tang K (2004) Preference of simple sequence repeats in coding and non-coding regions of Arabidopsis thaliana. Bioinformatics 20:1081-1086. doi:10.1093/bioinformatics/bth043.
35. Zuo ZH, Wang CG, Cao XH, Su Y, Liao LJ, Chen YX (2007) Isolation and characterization of microsatellite loci from a commercial cultivar of Porphyra haitanensis. Mol Ecol Notes 7:522-524. doi:10.1111/j.1471-8286.2006.01642.x.