Cloning and characterization of G+C-rich, highly repeated DNA sequences from Porphyra yezoensis (laver), Rhodophyta

Journal of Applied Phycology

Volumn 12, Issue 2, 2000, Pages 131-138

  Mizukami, Yuzuru ^a   Kito, Hitoshi ^a   Kunimoto, Masahiko ^a   Kobayashi, Masahiro ^b  

^a NATIONAL FISHERIES UNIVERSITY   (Japan)

^b FISHERIES RESEARCH AGENCY   (Japan)

Author keywords

G+C rich sequence; Interspersed DNA; Porphyra yezoensis; Tandem repeated DNA

Indexed keywords

GENE INSERTION; MOLECULAR CLONING; NUCLEIC ACID STRUCTURE; REPETITIVE DNA; SEQUENCE ANALYSIS;

GELIDIUM; GRATELOUPIA; PORPHYRA YEZOENSIS;

EID: 0033855078     PISSN: 09218971     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008176409864     Document Type: Article

References (22)

1. Doolittle WF, Sapienza C (1980) Selfish genes, the phenotype paradigm, and genome evolution. Nature 284: 601-603.
2. Evans IJ, James AM, Barnes SR (1983) Organizition and evolution of repeated DNA sequences in closely related plant genomes. J. mol. Biol. 170: 803-826.
3. Fujita Y, Saito M (1990) Protoplast isolation and fusion in Porphyra (Bangiales, Rhodophyta). Hydrobiologia 204/205: 161-166.
4. Hallden C, Bryngelsson T, Sall T, Gustafsson M (1987) Distribution and evolution of a tandemly repeated DNA sequence in the family Brassicaceae. J. mol. Evol. 25: 318-323.
5. Kapraun DF, Hinson TK, Lemus AJ (1991) Karyology and cytophotometric estimation of inter- and intraspecific nuclear DNA variation in four species of Porphyra (Rhodophyta). Phycologia 30: 458-466.
6. Kido Y, Aono M, Yamaki T, Matsumoto K, Murata S, Saneyoshi M, Okada N (1991) Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution. Proc. natl. Acad. Sci. USA 88: 2326-2330.
7. Kunimoto M, Kito H, Kaminishi Y, Mizukami Y, Murase N (1999a) Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta). J. appl. Phycol. 11: 211-216.
8. Kunimoto M, Kito H, Yamamoto Y, Cheney DP, Kaminishi Y, Mizukami Y (1999b) Discrimination of Porphyra species based on small subunit ribosomal RNA gene sequence. J. appl. Phycol. 11: 203-209.
9. Lewin R (1982) Repeated DNA still in search of a function. Science 217: 621-623.
10. Maniatis T, Fritsch EF, Sambrook J (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
11. Martinez-Zapater JM, Estelle MA, Somerville CR (1986) A highly repeated DNA sequence in Arabidopsis thaliana. Mol. gen. Genet. 204: 417-423.
12. Mizukami Y, Kaminishi Y, Kunimoto M, Kobayashi M, Murase N, Kito H (1998b) Comparison of partial nucleotide sequences in the exonic region of a small subunit ribosomal RNA gene for discrimination of laver (Porphyra) species and cultivars. Fisheries Sci. 64: 886-891.
13. Mizukami Y, Kito H, Kunimoto M, Kobayashi M (1998c) Effect of DNA preparation from laver (Porphyra yezoensis) thalli on reproducibility of RAPD (random amplified polymorphic DNA) patterns. J. appl. Phycol. 10: 23-29.
14. Mizukami Y, Okauchi M, Kito H, Ishimoto S, Ishida T, Fuseya M (1995) Culture and development of electrically fused protoplasts from red marine algae, Porphyra yezoensis and P. suborbiculata. Aquaculture 132: 361-367.
15. Mizukaimi Y, Okauchi M, Kito H, Kobayashi M (1996a) DNA fingerprinting of cultivated laver Porphyra yezoensis and P. tenera with oligonucleotide probes, and its application to cultivar discrimination. Fisheries Sci. 62: 173-177.
16. Mizukami Y, Okauchi M, Kito H, Kobayashi M (1996b) Discrimination of laver cultivars with RAPD markers. Fisheries Sci. 62: 547-551.
17. Mizukami Y, Okauchi M, Kobayashi M, Kito H (1998a) Use of minisatellite probes for DNA fingerprinting of cultivated laver. J. Natl. Fish. Univ. 46: 197-201.
18. Patway MU, van der Meer JP (1994) Application of RAPD markers in an examination of heterosis in Gelidium vagum (Rhodophyta). J. Phycol. 30: 91-97.
19. Rivin CJ, Cullis CA, Walbot V (1986) Evaluating quantitative variation in the genome of Zea mays. Genetics 113: 1009-1019.
20. Singer MF (1982b) SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes. Cell 28: 433-434.
21. Tautz D, Renz M (1984) Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res. 12: 4127-4138.
22. Zhao X, Wu T, Xie Y, Wu R (1989) Genome-specific repetitive sequences in the genus Oryza. Theor. appl. Genet. 78: 201-209