-
1
-
-
33644877164
-
BioModels Database: A free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
-
Le Novère, N., Bornstein, B., Broicher, A., Courtot, M., Donizelli, M., Dharuri, H., Li, L., Sauro, H., Schilstra, M., Shapiro, B., Snoep, J.L., Hucka, M.: BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res. 34, D689-D691 (2006)
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Le Novère, N.1
Bornstein, B.2
Broicher, A.3
Courtot, M.4
Donizelli, M.5
Dharuri, H.6
Li, L.7
Sauro, H.8
Schilstra, M.9
Shapiro, B.10
Snoep, J.L.11
Hucka, M.12
-
2
-
-
0037433037
-
The Database of Quantitative Cellular Signaling: Management and analysis of chemical kinetic models of signaling networks
-
Sivakumaran, S., Hariharaputran, S., Mishra, J., Bhalla, U.S.: The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks. Bioinformatics 19, 408-415 (2003)
-
(2003)
Bioinformatics
, vol.19
, pp. 408-415
-
-
Sivakumaran, S.1
Hariharaputran, S.2
Mishra, J.3
Bhalla, U.S.4
-
3
-
-
4544344218
-
Web-based kinetic modelling using JWS Online
-
Olivier, B.G., Snoep, J.L.: Web-based kinetic modelling using JWS Online. Bioinformatics 20, 2143-2144 (2004)
-
(2004)
Bioinformatics
, vol.20
, pp. 2143-2144
-
-
Olivier, B.G.1
Snoep, J.L.2
-
4
-
-
2442595958
-
CellML: Its future, present and past
-
Lloyd, C.M., Halstead, M.D.B., Nielsen, P.F.: CellML: its future, present and past. Prog. Biophys. Mol. Biol. 85, 433-450 (2004)
-
(2004)
Prog. Biophys. Mol. Biol
, vol.85
, pp. 433-450
-
-
Lloyd, C.M.1
Halstead, M.D.B.2
Nielsen, P.F.3
-
5
-
-
28644433993
-
Minimum information requested in the annotation of biochemical models (MIRIAM)
-
Le Novère, N., Finney, A., Hucka, M., Bhalla, U.S., Campagne, F., Collado-Vides, J., Crampin, E.J., Halstead, M., Klipp, E., Mendes, P., Nielsen, P., Sauro, H., Shapiro, B., Snoep, J.L., Spence, H.D., Wanner, B.L.: Minimum information requested in the annotation of biochemical models (MIRIAM). Nat. Biotechnol. 23, 1509-1515 (2005)
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 1509-1515
-
-
Le Novère, N.1
Finney, A.2
Hucka, M.3
Bhalla, U.S.4
Campagne, F.5
Collado-Vides, J.6
Crampin, E.J.7
Halstead, M.8
Klipp, E.9
Mendes, P.10
Nielsen, P.11
Sauro, H.12
Shapiro, B.13
Snoep, J.L.14
Spence, H.D.15
Wanner, B.L.16
-
6
-
-
45749118607
-
-
Taylor, C.F, Field, D, Sansone, S.A, Aerts, J, Apweiler, R, Ashburner, M, Ball, C.A, Binz, P.A, Bogue, M, Booth, T, Brazma, A, Brinkman, R.R, Clark, A.M, Deutsch, E.W, Fiehn, O, Fostel, J, Ghazal, F, Gibson, F, Gray, T, Grimes, G, Hancock, J.M, Hardy, N.W, Hermjakob, H, Julian, R.K, Kane, M, Kettner, C, Kinsinger, C, Kolker, E, Kuiper, M, Le Novère, N, Leebens-Mack, J, Lewis, S.E, Lord, P, Mallon, A.M, Marthandan, N, Masuya, H, McNally, R, Mehrle, A, Morrison, N, Orchard, S, Quackenbush, J, Reecy, J.M, Robertson, D.G, Rocca-Serra, P, Rodriguez, H, Rosenfelder, H, Santoyo-Lopez, J, Scheuermann, R.H, Schober, D, Smith, B, Snape, J, Stoeckert, C.J, Tipton, K, Sterk, P, Un-tergasser, A, Vandesompele, J, Wiemann, S, Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat. Biotechnol. 26, 889-896 2008
-
Taylor, C.F., Field, D., Sansone, S.A., Aerts, J., Apweiler, R., Ashburner, M., Ball, C.A., Binz, P.A., Bogue, M., Booth, T., Brazma, A., Brinkman, R.R., Clark, A.M., Deutsch, E.W., Fiehn, O., Fostel, J., Ghazal, F., Gibson, F., Gray, T., Grimes, G., Hancock, J.M., Hardy, N.W., Hermjakob, H., Julian, R.K., Kane, M., Kettner, C., Kinsinger, C., Kolker, E., Kuiper, M., Le Novère, N., Leebens-Mack, J., Lewis, S.E., Lord, P., Mallon, A.M., Marthandan, N., Masuya, H., McNally, R., Mehrle, A., Morrison, N., Orchard, S., Quackenbush, J., Reecy, J.M., Robertson, D.G., Rocca-Serra, P., Rodriguez, H., Rosenfelder, H., Santoyo-Lopez, J., Scheuermann, R.H., Schober, D., Smith, B., Snape, J., Stoeckert, C.J., Tipton, K., Sterk, P., Un-tergasser, A., Vandesompele, J., Wiemann, S.: Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat. Biotechnol. 26, 889-896 (2008)
-
-
-
-
7
-
-
35948989284
-
-
Smith, B., Ashburner, M., Rosse, C., Bard, J., Bug, W., Ceusters, W., Goldberg, L.J., Eilbeck, K., Ireland, A., Mungall, C.J., Consortium, O.B.I., Leontis, N., Rocca-Serra, P., Ruttenberg, A., Sansone, S.A., Scheuermann, R.H., Shah, N., Whetzel, P.L., Lewis, S.: The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255 (2007)
-
Smith, B., Ashburner, M., Rosse, C., Bard, J., Bug, W., Ceusters, W., Goldberg, L.J., Eilbeck, K., Ireland, A., Mungall, C.J., Consortium, O.B.I., Leontis, N., Rocca-Serra, P., Ruttenberg, A., Sansone, S.A., Scheuermann, R.H., Shah, N., Whetzel, P.L., Lewis, S.: The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255 (2007)
-
-
-
-
8
-
-
0344303397
-
OWL Web Ontology Language Reference
-
Technical report
-
Smith, M., Welty, C., McGuinness, D.: OWL Web Ontology Language Reference. Technical report, W3C (2004)
-
(2004)
-
-
Smith, M.1
Welty, C.2
McGuinness, D.3
-
9
-
-
0037342537
-
-
Hucka, M., Finney, A., Sauro, H.M., Bolouri, H., Doyle, J.C., Kitano, H., Arkin, A.P., Bornstein, B.J., Bray, D., Cornish-Bowden, A., Cuellar, A.A., Dronov, S., Gilles, E.D., Ginkel, M., Gor, V., Goryanin, I.I., Hedley, W.J., Hodgman, T.C., Hofmeyr, J.H., Hunter, P.J., Juty, N.S., Kasberger, J.L., Kremling, A., Kum mer, U., Le Novère, N., Loew, L.M., Lucio, D., Mendes, P., Minch, E., Mjol-sness, E.D., Nakayama, Y., Nelson, M.R., Nielsen, P.F., Sakurada, T., Schaff, J.C., Shapiro, B.E., Shimizu, T.S., Spence, H.D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., Wang, J., Forum, S.B.M.L.: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19, 524-531 (2003)
-
Hucka, M., Finney, A., Sauro, H.M., Bolouri, H., Doyle, J.C., Kitano, H., Arkin, A.P., Bornstein, B.J., Bray, D., Cornish-Bowden, A., Cuellar, A.A., Dronov, S., Gilles, E.D., Ginkel, M., Gor, V., Goryanin, I.I., Hedley, W.J., Hodgman, T.C., Hofmeyr, J.H., Hunter, P.J., Juty, N.S., Kasberger, J.L., Kremling, A., Kum mer, U., Le Novère, N., Loew, L.M., Lucio, D., Mendes, P., Minch, E., Mjol-sness, E.D., Nakayama, Y., Nelson, M.R., Nielsen, P.F., Sakurada, T., Schaff, J.C., Shapiro, B.E., Shimizu, T.S., Spence, H.D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., Wang, J., Forum, S.B.M.L.: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19, 524-531 (2003)
-
-
-
-
10
-
-
0035968419
-
Towards NeuroML: Model Description Methods for Collaborative Modeling in Neu-roscience
-
Goddard, N., Hucka, M., Howell, F., Cornelis, H., Skankar, K., Beeman, D.: Towards NeuroML: Model Description Methods for Collaborative Modeling in Neu-roscience. Phil. Trans. Royal Society series B 356, 1209-1228 (2001)
-
(2001)
Phil. Trans. Royal Society series B
, vol.356
, pp. 1209-1228
-
-
Goddard, N.1
Hucka, M.2
Howell, F.3
Cornelis, H.4
Skankar, K.5
Beeman, D.6
-
11
-
-
57049184135
-
-
Köhn, D., Le Novère, N.: SED-ML - An XML Format for the Implementation of the MIASE Guidelines. In: Heiner, M., Uhrmacher, A.M. (eds.) CMSB 2008. LNCS (LNBI), 5307, pp. 176-190. Springer, Heidelberg (2008)
-
Köhn, D., Le Novère, N.: SED-ML - An XML Format for the Implementation of the MIASE Guidelines. In: Heiner, M., Uhrmacher, A.M. (eds.) CMSB 2008. LNCS (LNBI), vol. 5307, pp. 176-190. Springer, Heidelberg (2008)
-
-
-
-
13
-
-
70350428386
-
-
Beckett, D.: RDF/XML Syntax Specification (Revised). Technical report, W3C (2004)
-
Beckett, D.: RDF/XML Syntax Specification (Revised). Technical report, W3C (2004)
-
-
-
-
14
-
-
70350407355
-
-
Ausbrooks, R, Buswell, S, Carlisle, D, Dalmas, S, Devitt, S, Diaz, A, Frou-mentin, M, Hunter, R, Ion, P, Kohlhase, M, Miner, R, Poppelier, N, Smith, B, Soiffer, N, Sutor, R, Watt, S, Mathematical Markup Language (MathML) Version 2.0, 2 edn. Technical report, W3C 2003
-
Ausbrooks, R., Buswell, S., Carlisle, D., Dalmas, S., Devitt, S., Diaz, A., Frou-mentin, M., Hunter, R., Ion, P., Kohlhase, M., Miner, R., Poppelier, N., Smith, B., Soiffer, N., Sutor, R., Watt, S.: Mathematical Markup Language (MathML) Version 2.0, 2 edn. Technical report, W3C (2003)
-
-
-
-
15
-
-
0038745251
-
Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions
-
Technical report
-
Hucka, M., Finney, A., Le Novère, N.: Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions. Technical report (2006)
-
(2006)
-
-
Hucka, M.1
Finney, A.2
Le Novère, N.3
-
16
-
-
57049110559
-
CellML Simulation metadata specification - a specification for simulation metadata
-
Technical report, Auckland Bioengineering Institute
-
Miller, A.: CellML Simulation metadata specification - a specification for simulation metadata. Technical report, Auckland Bioengineering Institute (2007)
-
(2007)
-
-
Miller, A.1
|