The effect of carbon source on the secretome of Kluyveromyces lactis

Proteomics

Volumn 9, Issue 20, 2009, Pages 4744-4754

  Madinger, Catherine L ^a   Sharma, Shamik S ^a   Anton, Brian P ^a,b   Fields, Lauren G ^a   Cushing, Michelle L ^a   Canovas, Julie ^a   Taron, Christopher H ^a   Benner, Jack S ^a  

^a NEW ENGLAND BIOLABS   (United States)

^b BOSTON UNIVERSITY   (United States)

Author keywords

Kluyveromyces lactis; Multi dimensional; NanoESI MS MS; Nanoproteomics; Secretome; Sugar variation

Indexed keywords

FUNGAL PROTEIN; GALACTOSE; GLUCOSE; GLYCEROL;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; BIOREACTOR; CARBOHYDRATE METABOLISM; CARBON SOURCE; CONTROLLED STUDY; ELECTROSPRAY MASS SPECTROMETRY; FERMENTATION; FUNGAL CELL; FUNGAL STRAIN; FUNGUS GROWTH; GLYCOSYLATION; KLUYVEROMYCES; MOLECULAR MECHANICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN SECRETION; PROTEIN TRANSPORT; PROTEOMICS; SEPARATION TECHNIQUE; WILD TYPE;

CARBON; COMPUTATIONAL BIOLOGY; FUNGAL PROTEINS; GLYCOSYLATION; KLUYVEROMYCES; PROTEOME;

KLUYVEROMYCES LACTIS;

EID: 70350228772     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800915     Document Type: Article

References (16)

1. Becerra, M., Gonzalez-Siso, M. I., Cerdan, M. E., A transcriptome analysis of Kluyveromyces lactis growing in cheese whey. Int. Dairy J. 2006, 16, 207-214. (Pubitemid 41606136)
2. Suleau, A., Jacques, N., Reitz-Ausseur, J., Casaregola, S., Intraspecific gene expression variability in the yeast Kluyveromyces lactis revealed by micro-array analysis. FEMS Yeast Res. 2005, 5, 595-604. (Pubitemid 40380699)
3. Medina, M. L., Kiernan, U. A., Francisco, W. A., Proteomic analysis of rutin-induced secreted proteins from Aspergillus flavus. Fungal Genet. Biol. 2004, 41, 327-335. (Pubitemid 38169452)
4. Oda, K., Kakizono, D., Yamada, O., Iefuji, H. et al., Proteomic analysis of extracellular proteins from Aspergillus oryzae grown under submerged and solid-state culture conditions. Appl. Environ. Microbiol. 2006, 72, 3448-3457. (Pubitemid 43727998)
5. Paper, J. M., Scott-Craig, J. S., Adhikari, N. D., Cuomo, C. A., Walton, J. D., Comparative proteomics of extracellular proteins in vitro and in planta from the pathogenic fungus Fusarium graminearum. Proteomics 2007, 7, 3171-3183.
6. Gygi, S. P., Rochon, Y., Franza, B. R., Aebersold, R., Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 1999, 19, 1720-1730. (Pubitemid 29098230)
7. Swaim, C. L., Anton, B. P., Sharma, S. S., Taron, C. H., Benner, J. S., Physical and computational analysis of the yeast Kluyveromyces lactis secreted proteome. Proteomics 2008, 8, 2714-2723.
8. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J. et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25, 3389-3402. (Pubitemid 27359211)
9. Abeijon, C., Robbins, P. W., Hirschberg, C. B., Molecular cloning of the Golgi apparatus uridine diphosphate-N-acetylglucosamine transporter from Kluyveromyces lactis. Proc. Natl. Acad. Sci. USA 1996, 93, 5963-5968. (Pubitemid 26190785)
10. Deshpande, N., Wilkins, M. R., Packer, N., Nevalainen, H., Protein glycosylation pathways in filamentous fungi. Glycobiology 2008, 18, 626-637.
11. Denison, C., Rudner, A. D., Gerber, S. A., Bakalarski, C. E. et al., A proteomic strategy for gaining insights into protein sumoylation in yeast. Mol. Cell. Proteomics 2005, 4, 246-254. (Pubitemid 40439768)
12. Decker, B. L., Wickner, W. T., Enolase activates homotypic vacuole fusion and protein transport to the vacuole in yeast. J. Biol. Chem. 2006, 281, 14523-14528.
13. Sarry, J. E., Chen, S., Collum, R. P., Liang, S. et al., Analysis of the vacuolar luminal proteome of Saccharomyces cerevisiae. FEBS J. 2007, 274, 4287-4305. (Pubitemid 47228648)
14. George, R., Beddoe, T., Landl, K., Lithgow, T., The yeast nascent polypeptide-associated complex initiates protein targeting to mitochondria in vivo. Proc. Natl. Acad. Sci. USA 1998, 95, 2296-2301. (Pubitemid 28145935)
15. Hohmann, S., Osmotic stress signaling and osmoadaptation in yeasts. Microbiol. Mol. Biol. Rev. 2002, 66, 300-372. (Pubitemid 34625712)
16. Aguilar-Uscanga, B., Francois, J. M., A study of the yeast cell wall composition and structure in response to growth conditions and mode of cultivation. Lett. Appl. Microbiol. 2003, 37, 268-274. (Pubitemid 37041227)