Molecular diversity of chrysoviruses in Korean isolates of a new fungal species, Cryphonectria nitschkei

Journal of Microbiology

Volumn 47, Issue 4, 2009, Pages 441-447

  Kim, Jung Mi ^a   Kim, Jung Ae ^a   Park, Jin Ah ^a   Park, Seung Moon ^a   Cha, Byeong Jin ^b   Yang, Moon Sik ^a   Kim, Dae Hyuk ^a  

^a Chonbuk National University   (South Korea)

^b Chungbuk National University   (South Korea)

Author keywords

Chrysovirus; Cryphonectria nitschkei; dsRNA; ITS

Indexed keywords

CAPSID PROTEIN; RNA DIRECTED RNA POLYMERASE; VIRUS PROTEIN;

ARTICLE; ASCOMYCETES; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; KOREA; MOLECULAR GENETICS; PHYLOGENY; RNA VIRUS; SEQUENCE HOMOLOGY; VIROLOGY;

ASCOMYCOTA; CAPSID PROTEINS; GENETIC VARIATION; KOREA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA REPLICASE; RNA VIRUSES; SEQUENCE HOMOLOGY, NUCLEIC ACID; VIRAL PROTEINS;

CHRYSOVIRUS; CRYPHONECTRIA; CRYPHONECTRIA NITSCHKEI; MIRIDAE;

EID: 70350160211     PISSN: 12258873     EISSN: 12258873     Source Type: Journal    
DOI: 10.1007/s12275-009-0206-7     Document Type: Article

References (41)

1. Altschul, S.F., T.L. Madden, A.A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
2. Anagnostakis, S.L. 1982. Biological control of chestnut blight. Science 215, 466-471.
3. Boland, G.J. 1992. Hypovirulence and double-stranded RNA in Sclerotinia sclerotiorum. Can. J. Plant Pathol. 14, 10-17.
4. Buck, K. 1998. Molecular variability of viruses of fungi, p. 53-72. In P.D. Bridge, Y. Couteaudier, and J.M. Clackson (eds.), Molecular Variability of Fungal Pathogens, CAB international. Wallingford, USA.
5. Castro, M., K. Kramer, L. Valdivia, S. Ortiz, and A. Castillo. 2003. A double-stranded RNA mycovirus confers hypovirulence-associated traits to Botrytis cinerea. FEMS Microbiol. Lett. 228, 87-91.
6. Coutts, R.H.A., L. Covelli, F.D. Di Serio, A. Citir, S. Acikgöz, C. Hernández, A. Ragozzino, and R. Flores. 2004. Cherry chlorotic rusty spot and Amasya cherry diseases are associated with a complex pattern of mycoviral-like double-stranded RNAs. II. Characterization of a new species in the genus Partitivirus. J. Gen. Virol. 85, 3399-3403.
7. Covelli, L., R.H.A. Coutts, F. Di Serio, A. Citir, S. Acikgöz, C. Hernández, A. Ragozzino, and R. Flores. 2004. Cherry chlorotic rusty spot and Amasya cherry diseases are associated with a complex pattern of mycoviral-like double-stranded RNAs. I. Characterization of a new species in the genus Chrysovirus. J. Gen. Virol. 85, 3389-3397.
8. Dawe, A.L. and D.L. Nuss. 2001. Hypoviruses and chestnut blight: exploiting viruses to understand and modulate fungal pathogenesis. Ann. Rev. Genet. 35, 1-29.
9. Day, P.R., S.L. Anagnostakis, and J.E. Puhalla. 1971. Pathogenicity resulting from mutation at the b locus of Ustilago maydis. Proc. Natl. Acad. Sci. USA 68, 533-535.
10. Fauquet, C.M., M.A. Mayo, J. Maniloff, U. Desselberger, and L.A. Ball. 2005. Virus taxonomy: Eight report of the international committee on taxonomy of viruses, Academic Press, California, USA.
11. Ghabrial, S.A. 1998. Origin, adaptation and evolutionary pathways of fungal viruses. Virus Genes 16, 119-131.
12. Ghabrial, S.A. and J.R. Caston. 2005. Family Chrysoviridae, p. 591-595. In C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, and A.L. Ball (eds.), Virus Taxonomy: Eight Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, USA.
13. Henikoff, S. and J.G. Henikoff. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA 89, 10915-10919.
14. Herrero, N., M.S. Sánchez, and I. Zabalgogeazcoa. 2009. Mycoviruses are common among different species of endophytic fungi of grasses. Arch. Virol. 154, 327-330.
15. Hillman, B.I., S. Supyani, H. Kondo, and N. Suzuki. 2004. A reovirus of the fungus Cryphonectria parasitica that is infectious as particles and related to the Coltivirus genus of animal pathogen. J. Virol. 79, 892-898.
16. Hillman, B.I. and N. Suzuki. 2004. Viruses of the chestnut blight fungus, Cryphonectria parasitica. Adv. Virus Res. 63, 423-472.
17. Hollings, M. 1982. Mycoviruses and plant pathology. Plant Dis. 66, 1106-1112.
18. Jiang, D. and S.A. Ghabrial. 2004. Molecular characterization of Penicillium chrysogenum virus: Reconsideration of the taxonomy of the genus Chrysovirus. J. Gen. Virol. 85, 2111-2121.
19. Ju, Y.J., D.H. Kim, and B.J. Cha. 2002. Isolation of Cryphonectria parasitica from cankers on chestnut trees in Korea. Plant Pathol. J. 18, 23-29.
20. Kim, D.H., D. Rigling, L. Zhang, and N.K. van Alfen. 1995. A new extracellular laccase of Cryphonectria parasitica is revealed by deletion of Lac1. Mol. Plant-Microbe Interact. 8, 259-266.
21. Kwon, S.J., W.S. Lim, S.H. Park, M.R. Park, and K.H. Kim. 2007. Molecular characterization of a dsRNA mycovirus, Fusarium graminearum virus-DK21, which is phylogenetically related to hypoviruses but has a genome organization and gene expression strategy resembling those of plant potex-like viruses. Mol. Cells 23, 304-315.
22. Lakshman, D.K., J. Jian, and S.M. Tavantzis. 1998. A double-stranded RNA element from a hypovirulent strain of Rhizoctonia solani occurs in DNA form and is genetically related to the pentafunctional AROM protein of the shikimate pathway. Proc. Natl. Acad. Sci. USA 95, 6425-6429.
23. Lee, Y.D., S.G. Park, S.G. Kim, C.G. Lee, T.S. Lee, H.P. Hong, S.S. Kim, J.S Lee, W.H. Jeong, M.S. Choi, K.W. Park, T.S. Kwon, K.J. Won, S.G. Lee, and J.Y. Lee. 1992. Specimen collection of phytoblight, and isolation and identification of phytopathogen, p. 320-329. In Korea Forest Research Institute Rep.
24. Liu, Y.C., J.N. Dynek, B.I. Hillman, and M.G. Milgroom. 2007. Diversity of viruses in Cryphonectria parasitica and C. nitschkei in Japan and China, and partial characterization of a new chrysovirus species. Mycol. Res. 12, 1619-1628.
25. Liu, Y.C., B.I. Hillman, D. Linder-Basso, S. Kaneko, and M.G. Milgroom. 2003. Evidence for interspecies transmission of viruses in natural populations of filamentous fungi in the genus Cryphonectria. Mol. Ecol. 12, 1619-1628.
26. Myburg, H., M. Gryzenhout, B.D. Wingfield, M.G. Milgroom, S. Kaneko, and M.J. Wingfield. 2004a. DNA sequence data and morphology define Cryphonectria species in Europe, China, and Japan. Can. J. Bot. 82, 1730-1743.
27. Myburg, H., M. Gryzenhout, B.D. Wingfield, M.J. Wingfield, and R.J. Stipes. 2004b. Phylogenetic relationships of Cryphonectria and Endothia species, based on DNA sequence data and morphology. Mycologia 96, 990-1001.
28. Myburg, H., B.D. Wingfield, and M.J. Wingfield. 1999. Phylogeny of Cryphonectria cubensis and allied species inferred from DNA analysis. Mycologia 91, 243-250.
29. Nogawa, M., T. Kageyama, A. Nakatani, G. Taguchi, M. Shimosaka, and M. Okazaki. 1996. Cloning and characterization of mycovirus double-stranded RNA from the plant pathogenic fungus, Fusarium solani f. sp. robiniae. Biosci. Biotechnol. Biochem. 60, 784-788.
30. Nuss, D.L. 2005. Hypovirulence: mycoviruses at the fungal-plant interface. Nat. Rev. Microbiol. 3, 632-642.
31. Park, S.M., E.S. Choi, M.J. Kim, B.J. Cha, M.S. Yang, and D.H. Kim. 2004. Characterization of HOG1 homologue, CpMK1, from Cryphonectria parasitica and evidence for hypovirus-mediated perturbation of its phosphorylation in response to hypertonic stress. Mol. Microbiol. 51, 1267-1277.
32. Park, S.M., J.M. Kim, H.J. Chung, J.Y. Lim, B.R. Kwon, J.G. Lim, J.A. Kim, M.J. Kim, B.J. Cha, S.H. Lee, K.H. Kim, Y.S. Lee, M.S. Yang, and D.H. Kim. 2008. Occurrence of diverse dsRNA in a Korean population of the chestnut blight fungus, Crypho-nectria parasitica. Mycol. Res. 12, 1220-1226.
33. Pearson, M.N., R.E. Beever, B. Boine, and K. Arthur. 2009. Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol. Plant Pathol. 10, 115-128.
34. Peever, T.L., Y.C. Liu, K. Wang, B.I. Hillman, R. Foglia, and M.G. Milgroom. 1998. Incidence and diversity of double-stranded RNAs infecting the chestnut blight fungus, Cryphonectria parasitica, in China and Japan. Phytopathology 88, 811-817.
35. Preisig, O., N. Moleleki, W.A. Smit, B.D. Wingfield, and M.J. Wingfield. 2000. A novel RNA mycovirus in a hypovirulent isolate of the plant pathogen Diaporthe ambigua. J. Gen. Virol. 81, 3107-3114.
36. Sanger, F., G.M. Air, B.G. Barrell, N.L. Brown, A.R. Coulson, C.A. Fiddes, C.A. Hutchison, P.M. Slocombe, and M. Smith. 1977. Nucleotide sequence of bacteriophage phi X174 DNA. Nature 265, 687-695.
37. Swofford, D.L. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods). Version 4.0 Sinauer Associates, Sunderland, Massachusetts, USA.
38. Thompson, J.D., T.J. Gibson, and D.G. Higgins. 2002. Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinformatics. Chapter 2, Unit 2.3.
39. van Alfen, N.K., R.A. Jaynes, S.L. Anagnostakis, and P.R. Day. 1975. Chestnut blight: Biological control by transmissible hypovirulence in Endothia parasitica. Science 189, 890-891.
40. Venter, M., H. Myburg, B.D. Wingfield, T.A. Coutinho, and M.J. Wingfield. 2002. A new species of Cryphonectria from South Africa and Australia, pathogenic to Eucalyptus. Sydowia 54, 98-117.
41. White, T.J., T. Brunes, and J.W. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, p. 315-322. In M. Innis, D. Gelfand, J. Sninsky, and T. White (eds.), PCR Protocols, A guide to Methods and Applications, Academic Press, San Diego, USA.