MHC microsatellites in a southern Brazilian population

International Journal of Immunogenetics

Volumn 36, Issue 5, 2009, Pages 269-274

  Sens Abuazar C ^a   Santos, P S C ^a,b   Bicalho, M G ^a   Petzl Erler, M L ^a   Sperandio Roxo, V ^a  

^a FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

^b CHARITÉ UNIVERSITÄTSMEDIZIN BERLIN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

HLA B ANTIGEN; HLA DQB1 ANTIGEN; HLA DR ANTIGEN; MICROSATELLITE DNA;

ARTICLE; BRAZIL; GENE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; HAPLOTYPE; HLA GENE; HUMAN; MAJOR HISTOCOMPATIBILITY COMPLEX; MICROSATELLITE MARKER; NORMAL HUMAN; PRIORITY JOURNAL;

BRAZIL; EUROPEAN CONTINENTAL ANCESTRY GROUP; GENE FREQUENCY; HAPLOTYPES; HETEROZYGOTE; HLA-DQ ANTIGENS; HLA-DR ANTIGENS; HUMANS; LINKAGE DISEQUILIBRIUM; MAJOR HISTOCOMPATIBILITY COMPLEX; MEMBRANE GLYCOPROTEINS; MICROSATELLITE REPEATS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 70350139582     PISSN: 17443121     EISSN: 1744313X     Source Type: Journal    
DOI: 10.1111/j.1744-313X.2009.00864.x     Document Type: Article

References (30)

1. Abbas, A.K. & Lichtman, A.H., eds (2005) The histocompatibility complex. In: Celular and Molecular Immunology, 5th edn, p. 65. Elsevier Scientific Publications, Rio de Janeiro, Brazil.
2. Bolognesi, E., D'alfonso, S., Rolando, V., Fasano, M.E., Pratico, L. & Richiardi-Momigliano, P. (2001) MICA and MICB microsatellite alleles in HLA extended haplotypes. European Journal of Immunogenetics, 28, 523.
3. Crouau-Roy, B., Briant, L., Bouissou, C. et al. (1993) Tumor necrosis factor microsatellites in four European populations. Human Immunology, 38, 213.
4. Excoffier, L., Laval, G., Scheinder, S. (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics online, 1, 47.
5. Feng, M.L., Guo, X.J., Zhang, J.Y., Xie, J.H., Chen, L.Q., Yang, J.H. et al. (2004) Study on the haplotypes of MICA and MICB microsatellites and HLA-B locus in the Guangzhou Han population. Tissue Antigens, 64, 281.
6. Foissac, A., Crouau-Roy, B., Faure, S. et al. (1997a) Microsatellites in the HLA region: an overview. Tissue Antigens, 49, 197.
7. Foissac, A., Fort, M.L., Giraldo, P. et al. (1997b) Microsatellites in the HLA region: Potential applications in bone marrow transplantation. Immunology Review, 29, 2374.
8. Foissac, A., Fort, M., Clayton, J. et al. (2001) Microsatellites in the HLA region: HLA prediction and strategies for bone marrow donor registries. Transplant Procedures, 33, 491.
9. Ghaderi, M., Nikitina, Z.L., Wallin, K. et al. (2001) Tumor necrosis factor A and MHC class I chain related gene A (MIC-A) polymorphisms in Swedish patients with cervical cancer. Human Immunology, 62, 1153.
10. Gourraud, P.A., Mano, S., Barnetche, T. et al. (2004) Integration of microsatellite characteristics in the MHC region: a literature and sequence based analysis. Tissue Antigens, 64, 543.
11. Grimaldi, M.C., Clayton, J., Pontarotti, P., Cambon-Thomsen, A. & Crouau-Roy, B. (1996) New highly polymorphic microsatellite marker in linkagedisequilibrium with HLA-B. Human Immunology, 51, 89.
12. Grubic, Z., Stingl, K., Zunec, R., Car, H., Cecuk-Jelicic, E. & Brkljacic-Kerhin, V. (2006) Linkage disequilibria between human leucocyte antigen-B and closely linked microsatellites in the Croatian population. Tissue Antigens, 69, 86.
13. Hajeer, A.H. & Hutchinson, I.V. (2001) Influence of TNFa gene polymorphisms on TNFa production and disease. Human Immunology, 62, 1191.
14. Kashi, Y., King, D. & Soller, M. (2006) Simple sequence repeats as advantageous mutators in evolution. Trends in Genetics, 22, 253.
15. Kim, H.K., Hoon, H., Choi, H.B., Pyo, C.W., Kim, C.C. & Kim, T.G. (2000) Distribution of seven polymorphic markers and haplotypes within the human TNF gene cluster in Koreans. Human Immunology, 61, 1274.
16. Lewontin, R.C. (1964) The interaction of selection and linkage. I. General considerations; heterotic models. Genetics, 49, 49.
17. Malkki, M., Single, R., Carrington, M., Thomson, G. & Petersdorf, E. (2005) MHC microsatellite diversity and linkage disequilibrium among common HLA-A, HLA-B, DRB1 haplotypes: implications for unrelated donor hematopoietic transplantation and disease association studies. Tissue Antigens, 66, 114.
18. Malkki, M., Gooley, T., Horowitz, M. & Petersdorf, E.W. (2007) MHC class I, II, and III microsatellite marker matching and survival in unrelated donor hematopoietic cell transplantation. Tissue Antigens, 69, 46.
19. Matsuzaka, Y., Makino, S., Nakajima, K. et al. (2000) New polymorphic microsatelite markers in the human MHC class II region. Tissue Antigens, 56, 492.
20. Oliveira, L.A., Ribas, F., Bicalho, M.G., Tsuneto, L.T. & Petzl-Erler, M.L. (2008) High frequencies of alleles MICA*020 and MICA*027 in Amerindians and evidence of positive selection on exon 3. Genes and Immunity, 9, 697.
21. Ota, M., Katsuyama, Y., Mizuki, N. et al. (1997) Trinucleotide repeat polymorphism within exon 5 of the MICA gene (MHC class I chain-related gene A): allele frequency data in the nine population groups Japanese, Northern Han, Hui, Uygur, Kazakhstan, Iranian, Saudi, Arabian, Greek and Italian. Tissue Antigens, 49, 448.
22. Perez-Rodrigues, M., Correl, A., Arguello, J.R. et al. (2000) A new STR-MICA allele with ten alanine residues in the exon 5 microsatellite. Tissue Antigens, 55, 162.
23. Probst, C.M., Bompeixe, E.P., Pereira, N.F. et al. (2000) HLA polymorphism and evaluation of European, African and Amerindian contribution to the White and Mulatto populations from Paraná, Brazil. Human Biology, 72, 597.
24. Rueda, B., Pascual, M., Lopez-Nevot, M.A., Gonzalez, E. & Martin, J. (2002) A new allele within the transmembrane region of the human STR-MICA gene with seven GCT repeats. Tissue Antigens, 60, 526.
25. Ruiz, T.M., Costa, S.M.C.M., Ribas, F., Luz, P.R., Lima, S.S. & Bicalho, M.G. (2005) Human leukocyte antigen allelic groups and haplotypes in a Brazilian sample of volunteer donors for bone marrow transplant in Curitiba, Paraná, Brazil. Transplant Procedures, 37, 2293.
26. Slatkin, M. (1995) Hitchhiking and associative over-dominance at a microssatelite locus. Molecular Biology & Evolution, 12, 473.
27. The MHC Sequencing Consortium (1999) Complete sequence and gene map of a human major histocompatibility complex. Nature, 401, 921.
28. Tian, W., Li, L.X., Wang, F., Luo, Q.Z., Yan, M.Y., Yu, P. et al. (2006) MICA-STR, HLA-B haplotypic diversity and linkage disequilibrium in the Hunan Han population of southern China. International Journal of Immunogenetics, 33, 241.
29. Trachtenberg, E., Vinson, M., Hayes, E. et al. (2007) HLA class I (A, B, C) and class II (DRB1, DQA1, DQB1, DPB1) alleles and haplotypes in the Han from southern China. Tissue Antigens, 70, 455.
30. Udalova, I.A., Nedospasov, S.A., Webb, G.C., Chaplin, D.D. & Turetskaya, R.L. (1993) Highly informative typing of the human TNF locus using six adjacent polymorphic markers. Genomics, 16, 180.