메뉴 건너뛰기




Volumn , Issue , 2009, Pages 924-929

Regulatory networks analysis: Robustness in morphogenesis regulation

Author keywords

Boundary influence; Genes co expression; Graph core; Interaction graph boundary; Morphogenesis regulatory networks; Robustness

Indexed keywords

BOUNDARY INFLUENCE; GRAPH CORE; INTERACTION GRAPH BOUNDARY; MORPHOGENESIS REGULATORY NETWORKS; ROBUSTNESS;

EID: 70350115926     PISSN: 1550445X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/WAINA.2009.138     Document Type: Conference Paper
Times cited : (7)

References (41)
  • 1
    • 0141974933 scopus 로고    scopus 로고
    • Mathematical modelling in genetic networks : Relationships between the genetic expression and both chromosomic breakage and positive circuits
    • J. Aracena, S. Ben Lamine, M.A. Mermet, O. Cohen and J. Demongeot. Mathematical modelling in genetic networks : relationships between the genetic expression and both chromosomic breakage and positive circuits. IEEE Trans. Syst. Man Cybernetics, 33:825-834, 2003.
    • (2003) IEEE Trans. Syst. Man Cybernetics , vol.33 , pp. 825-834
    • Aracena, J.1    Ben Lamine, S.2    Mermet, M.A.3    Cohen, O.4    Demongeot, J.5
  • 3
    • 1642586056 scopus 로고    scopus 로고
    • Fixed points and maximal independent sets on AND-OR networks
    • J. Aracena, J. Demongeot and E. Goles. Fixed points and maximal independent sets on AND-OR networks. Discr. Appl. Math., 138:277-288, 2004.
    • (2004) Discr. Appl. Math , vol.138 , pp. 277-288
    • Aracena, J.1    Demongeot, J.2    Goles, E.3
  • 4
    • 3843066620 scopus 로고    scopus 로고
    • On limit cycles of monotone functions with symmetric connection graphs
    • J. Aracena, J. Demongeot and E. Goles. On limit cycles of monotone functions with symmetric connection graphs. Theoret. Comp. Sci., 322:237-244, 2004.
    • (2004) Theoret. Comp. Sci , vol.322 , pp. 237-244
    • Aracena, J.1    Demongeot, J.2    Goles, E.3
  • 5
    • 7744234763 scopus 로고    scopus 로고
    • Mathematical Methods for Inferring Regulatory Networks Interactions: Application to Genetic Regulation
    • J. Aracena and J. Demongeot. Mathematical Methods for Inferring Regulatory Networks Interactions: Application to Genetic Regulation. Acta Biotheoretica, 52:391-400, 2004.
    • (2004) Acta Biotheoretica , vol.52 , pp. 391-400
    • Aracena, J.1    Demongeot, J.2
  • 6
    • 32144443469 scopus 로고    scopus 로고
    • Regulatory network for cell shape changes during Drosophila ventral furrow formation
    • J. Aracena, M. Gonzalez, A. Zuniga, M.A. Mendez and V. Cambiazo. Regulatory network for cell shape changes during Drosophila ventral furrow formation. J. Theor. Biol., 239:49-62, 2006.
    • (2006) J. Theor. Biol , vol.239 , pp. 49-62
    • Aracena, J.1    Gonzalez, M.2    Zuniga, A.3    Mendez, M.A.4    Cambiazo, V.5
  • 7
    • 18344393234 scopus 로고    scopus 로고
    • Effect of boundary conditions on scaling in the "game of life
    • H.J. Blok and B. Bergersen. Effect of boundary conditions on scaling in the "game of life". Physical Review E, 55:6249-6252, 1997.
    • (1997) Physical Review E , vol.55 , pp. 6249-6252
    • Blok, H.J.1    Bergersen, B.2
  • 8
    • 0036306859 scopus 로고    scopus 로고
    • Positive and negative feedback: Striking a balance between necessary antagonists
    • O. Cinquin and J. Demongeot. Positive and negative feedback: striking a balance between necessary antagonists. J. Theor. Biol., 216:229-241, 2002.
    • (2002) J. Theor. Biol , vol.216 , pp. 229-241
    • Cinquin, O.1    Demongeot, J.2
  • 9
    • 0036864468 scopus 로고    scopus 로고
    • Positive and negative feedback: Mending the ways of sloppy systems
    • O. Cinquin and J. Demongeot. Positive and negative feedback: mending the ways of sloppy systems. C.R. Biologies, 325:1085-1095, 2002.
    • (2002) C.R. Biologies , vol.325 , pp. 1085-1095
    • Cinquin, O.1    Demongeot, J.2
  • 10
    • 11844273196 scopus 로고    scopus 로고
    • High-dimensional switches and the modeling of cellular differentiation
    • O. Cinquin and J. Demongeot. High-dimensional switches and the modeling of cellular differentiation. J. Theor. Biol., 233:391-411, 2005.
    • (2005) J. Theor. Biol , vol.233 , pp. 391-411
    • Cinquin, O.1    Demongeot, J.2
  • 11
    • 0142067334 scopus 로고    scopus 로고
    • Oxford UK: Oxford University Press
    • C. de Duve. Life Evolving. Oxford UK: Oxford University Press, 2002.
    • (2002) Life Evolving
    • de Duve, C.1
  • 12
    • 70350102044 scopus 로고    scopus 로고
    • J. Demongeot, J. Aracena, S. Ben Lamine, M.A. Mermet and O. Cohen. Hot spots in chromosomalbreakage: from description to etiology. In: Comparative Genomics, Sankoff D, Nadeau JH, eds. Comparative Genomics, Amsterdam: Kluwer, pp. 71-85, 2000.
    • J. Demongeot, J. Aracena, S. Ben Lamine, M.A. Mermet and O. Cohen. Hot spots in chromosomalbreakage: from description to etiology. In: Comparative Genomics, Sankoff D, Nadeau JH, eds. Comparative Genomics, Amsterdam: Kluwer, pp. 71-85, 2000.
  • 13
    • 0034050547 scopus 로고    scopus 로고
    • A mathematical model for storage and recall functions in plants
    • J. Demongeot, R. Thomas and M. Thellier. A mathematical model for storage and recall functions in plants. C.R. Acad. Sci. Vie, 323:93-97, 2000.
    • (2000) C.R. Acad. Sci. Vie , vol.323 , pp. 93-97
    • Demongeot, J.1    Thomas, R.2    Thellier, M.3
  • 14
    • 3042605130 scopus 로고
    • Dynamical confinement in neural networks and cell cycle
    • J. Demongeot, D. Benaouda and C. Jézéquel. Dynamical confinement in neural networks and cell cycle. Chaos, 5:167-173, 1995.
    • (1995) Chaos , vol.5 , pp. 167-173
    • Demongeot, J.1    Benaouda, D.2    Jézéquel, C.3
  • 15
    • 0038410163 scopus 로고    scopus 로고
    • J. Demongeot, J. Aracena, F. Thuderoz, T.P. Baumand O. Cohen. Genetic regulation networks: circuits, regulons and attractors. C.R. Biologies, 326:171-188, 2003.
    • J. Demongeot, J. Aracena, F. Thuderoz, T.P. Baumand O. Cohen. Genetic regulation networks: circuits, regulons and attractors. C.R. Biologies, 326:171-188, 2003.
  • 17
    • 33751173437 scopus 로고    scopus 로고
    • Storageand recall of environmental signals in a plant: Modelling by use of a differential (continuous) formulation
    • J. Demongeot, M. Thellier and R. Thomas. Storageand recall of environmental signals in a plant: modelling by use of a differential (continuous) formulation. C.R. Biologies, 329:971-978, 2006.
    • (2006) C.R. Biologies , vol.329 , pp. 971-978
    • Demongeot, J.1    Thellier, M.2    Thomas, R.3
  • 18
    • 44949258866 scopus 로고    scopus 로고
    • Robustness in neural and genetic networks
    • J. Demongeot, A. Elena and S. Sené. Robustness in neural and genetic networks. Acta Biotheoretica, 56:27- 49, 2008.
    • (2008) Acta Biotheoretica , vol.56 , pp. 27-49
    • Demongeot, J.1    Elena, A.2    Sené, S.3
  • 19
    • 33751184919 scopus 로고    scopus 로고
    • Potential automata. Application to the genetic code III
    • J. Demongeot, A. Elena and G. Weil. Potential automata. Application to the genetic code III. C.R. Biologies, 329:953-962, 2006.
    • (2006) C.R. Biologies , vol.329 , pp. 953-962
    • Demongeot, J.1    Elena, A.2    Weil, G.3
  • 20
    • 50249150825 scopus 로고    scopus 로고
    • J. Demongeot, M. Morvan and S. Sené. Impact of Fixed Boundary Conditions on the Basins of Attraction in the Flower's Morphogenesis of Arabidopsis thaliana. In: IEEE AINA' 08 & BLSMC' 08, Piscataway: IEEE Proceedings, pp. 782-789, 2008.
    • J. Demongeot, M. Morvan and S. Sené. Impact of Fixed Boundary Conditions on the Basins of Attraction in the Flower's Morphogenesis of Arabidopsis thaliana. In: IEEE AINA' 08 & BLSMC' 08, Piscataway: IEEE Proceedings, pp. 782-789, 2008.
  • 21
    • 53149104351 scopus 로고    scopus 로고
    • J. Demongeot, M. Morvan and S. Sené. Robustnessof Dynamical Systems Attraction Basins Against State Perturbations: Theoretical Protocol and Application in Systems Biology. In: IEEE ARES-CISIS' 08 & IIBM' 08, Piscataway: IEEE Proceedings, pp. 675-681, 2008.
    • J. Demongeot, M. Morvan and S. Sené. Robustnessof Dynamical Systems Attraction Basins Against State Perturbations: Theoretical Protocol and Application in Systems Biology. In: IEEE ARES-CISIS' 08 & IIBM' 08, Piscataway: IEEE Proceedings, pp. 675-681, 2008.
  • 22
    • 85056250408 scopus 로고    scopus 로고
    • Asymptotic behavior and phase transition in regulatory networks. I Theoretical results
    • J. Demongeot, C. Jezequel and S. Sené. Asymptotic behavior and phase transition in regulatory networks. I Theoretical results. Neural Networks, 21:962-970, 2008.
    • (2008) Neural Networks , vol.21 , pp. 962-970
    • Demongeot, J.1    Jezequel, C.2    Sené, S.3
  • 23
    • 70350097143 scopus 로고    scopus 로고
    • Asymptotic behaviorand phase transition in regulatory networks. II Simulations
    • J. Demongeot and S. Sené. Asymptotic behaviorand phase transition in regulatory networks. II Simulations. Neural Networks, 21:871-979, 2008.
    • (2008) Neural Networks , vol.21 , pp. 871-979
    • Demongeot, J.1    Sené, S.2
  • 24
    • 70350111979 scopus 로고    scopus 로고
    • Regulatory networks analysis: Robustness in artificial regulatory networks
    • Piscataway: IEEE Proceedings, submitted
    • J. Demongeot, E. Goles and S. Sené. Regulatory networks analysis: robustness in artificial regulatory networks. In: IEEE AINA' 09 & BLSMC' 09, Piscataway: IEEE Proceedings, submitted.
    • IEEE AINA' 09 & BLSMC' 09
    • Demongeot, J.1    Goles, E.2    Sené, S.3
  • 25
    • 53149149923 scopus 로고    scopus 로고
    • The game of life: Universality
    • 98-01, Lyon: ENS
    • B. Durand and Z. Roka. The game of life: universality. ENS Lyon Research Report #98-01, Lyon: ENS, 1998.
    • (1998) ENS Lyon Research Report
    • Durand, B.1    Roka, Z.2
  • 26
    • 53149120621 scopus 로고    scopus 로고
    • A. Elena and J. Demongeot. Interaction motifs inregulatory networks and structural robustness. In: IEEE ARES-CISIS' 08 & IIBM' 08, Piscataway: IEEE Proceedings, pp. 682-686, 2008.
    • A. Elena and J. Demongeot. Interaction motifs inregulatory networks and structural robustness. In: IEEE ARES-CISIS' 08 & IIBM' 08, Piscataway: IEEE Proceedings, pp. 682-686, 2008.
  • 27
    • 26844505881 scopus 로고    scopus 로고
    • Perturbing the topology of the game of life increases its robustness to asynchrony
    • N. Fates and M. Morvan. Perturbing the topology of the game of life increases its robustness to asynchrony.Lecture Notes in Computer Science, 3305:111-120, 2004.
    • (2004) Lecture Notes in Computer Science , vol.3305 , pp. 111-120
    • Fates, N.1    Morvan, M.2
  • 28
    • 0000870032 scopus 로고
    • Mathematical Games. The fantastic combinations of John Conway's new solitaire game life
    • M. Gardner. Mathematical Games. The fantastic combinations of John Conway's new solitaire game « life » . Scientific American, 223: 20-123, 1970.
    • (1970) Scientific American , vol.223 , pp. 20-123
    • Gardner, M.1
  • 29
    • 42249103439 scopus 로고    scopus 로고
    • Comparison between parallel and serial dynamics of Boolean networks
    • E. Goles and L. Salinas. Comparison between parallel and serial dynamics of Boolean networks. Theoretical Computer Science, 396:247-253, 2008.
    • (2008) Theoretical Computer Science , vol.396 , pp. 247-253
    • Goles, E.1    Salinas, L.2
  • 30
    • 33846581918 scopus 로고    scopus 로고
    • Statistical Epistasis Is a Generic Feature of Gene Regulatory Networks
    • A.B. Gjuvsland, B.J. Hayes, S.W. Omholt and O.Carlborg. Statistical Epistasis Is a Generic Feature of Gene Regulatory Networks. Genetics, 175:411-420, 2007.
    • (2007) Genetics , vol.175 , pp. 411-420
    • Gjuvsland, A.B.1    Hayes, B.J.2    Omholt, S.W.3    Carlborg, O.4
  • 31
    • 70350095304 scopus 로고    scopus 로고
    • http://www.discip.crdp.accaen.fr/svt/cgaulsvt/travaux /animatio/ mitmeio/tpmitose.htm
  • 32
    • 70350095303 scopus 로고    scopus 로고
    • http://www.drosophila-images.org/images-2005/07- slide-F.htm
  • 33
    • 27644443808 scopus 로고    scopus 로고
    • Cross talking of network motifs in gene regulation thatgenerates temporal pulses and spatial stripes
    • S. Ishihara, K. Fujimoto and T. Shibata. Cross talking of network motifs in gene regulation thatgenerates temporal pulses and spatial stripes. Genes to cells, 10:1025-1038, 2005.
    • (2005) Genes to cells , vol.10 , pp. 1025-1038
    • Ishihara, S.1    Fujimoto, K.2    Shibata, T.3
  • 34
    • 35348827221 scopus 로고    scopus 로고
    • Evolution of Robustness to Noise and Mutation in Gene Expression Dynamics
    • K. Kaneko. Evolution of Robustness to Noise and Mutation in Gene Expression Dynamics. PloS One, 2:e434, 2007.
    • (2007) PloS One , vol.2
    • Kaneko, K.1
  • 35
    • 34548729774 scopus 로고    scopus 로고
    • A newnecessary condition on interaction graphs for multistationarity
    • M. Kaufman, C. Soulé and R. Thomas. A newnecessary condition on interaction graphs for multistationarity. J. Theor. Biology, 248: 675-685, 2007.
    • (2007) J. Theor. Biology , vol.248 , pp. 675-685
    • Kaufman, M.1    Soulé, C.2    Thomas, R.3
  • 36
    • 0033564260 scopus 로고    scopus 로고
    • Gastrulation in Drosophila: The logic and the cellular mechanisms
    • M. Leptin. Gastrulation in Drosophila: the logic and the cellular mechanisms. EMBO J., 18: 3187-3192, 1999.
    • (1999) EMBO J , vol.18 , pp. 3187-3192
    • Leptin, M.1
  • 37
  • 38
    • 0037174670 scopus 로고    scopus 로고
    • R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan andD. Chklovskii and U. Alon. Network Motifs: Simple Building Blocks of Complex Networks. Science, 298:824-827, 2002.
    • R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan andD. Chklovskii and U. Alon. Network Motifs: Simple Building Blocks of Complex Networks. Science, 298:824-827, 2002.
  • 39
    • 7744230024 scopus 로고    scopus 로고
    • Graphic requirements for multistability
    • C. Soulé. Graphic requirements for multistability. Complexus, 1:123-133, 2003.
    • (2003) Complexus , vol.1 , pp. 123-133
    • Soulé, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.