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Volumn 261, Issue 3, 2009, Pages 488-493

Shepherd model for knot-limited polymer ejection from a capsid

Author keywords

Exclusion process; Stochastic effects; Virus ejection

Indexed keywords

POLYMER;

EID: 70350075274     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2009.08.021     Document Type: Article
Times cited : (8)

References (31)
  • 2
    • 70350080609 scopus 로고    scopus 로고
    • Antal, T., Krapivsky, P.L., Mallick, K., 2007. Molecular spiders in one dimension. J. Stat. Mech. P08027.
    • Antal, T., Krapivsky, P.L., Mallick, K., 2007. Molecular spiders in one dimension. J. Stat. Mech. P08027.
  • 3
    • 0037117517 scopus 로고    scopus 로고
    • Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids
    • Arsuaga J., Vazquez M., Trigueros S., Sumners D.W., and Roca J. Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids. Proc. Natl. Acad. Sci. USA 99 (2002) 5373-5377
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 5373-5377
    • Arsuaga, J.1    Vazquez, M.2    Trigueros, S.3    Sumners, D.W.4    Roca, J.5
  • 5
    • 2942644661 scopus 로고    scopus 로고
    • Current fluctuations in nonequilibrium diffusive systems: an additivity principle
    • Bodineau T., and Derrida B. Current fluctuations in nonequilibrium diffusive systems: an additivity principle. Phys. Rev. Lett. 92 (2004) 180601
    • (2004) Phys. Rev. Lett. , vol.92 , pp. 180601
    • Bodineau, T.1    Derrida, B.2
  • 7
    • 0000094264 scopus 로고    scopus 로고
    • Motion of a driven tracer particle in a one-dimensional symmetric lattice gas
    • Burlatsky S.F., Oshanin G.S., Moreau M., and Reinhardt W.P. Motion of a driven tracer particle in a one-dimensional symmetric lattice gas. Phys. Rev. E 54 (1996) 3165-3172
    • (1996) Phys. Rev. E , vol.54 , pp. 3165-3172
    • Burlatsky, S.F.1    Oshanin, G.S.2    Moreau, M.3    Reinhardt, W.P.4
  • 8
    • 38149099289 scopus 로고    scopus 로고
    • DNA ejection from bacteriophage: towards a general behavior for osmotic-suppression experiments
    • Castelnovo M., and Evilevitch A. DNA ejection from bacteriophage: towards a general behavior for osmotic-suppression experiments. Eur. Phys. J. E 24 (2007) 9-18
    • (2007) Eur. Phys. J. E , vol.24 , pp. 9-18
    • Castelnovo, M.1    Evilevitch, A.2
  • 10
    • 34249900723 scopus 로고    scopus 로고
    • Towards a model for protein production rates
    • Dong J.J., Schmittmann B., and Zia R.K.P. Towards a model for protein production rates. J. Stat. Phys. 128 (2007) 21-34
    • (2007) J. Stat. Phys. , vol.128 , pp. 21-34
    • Dong, J.J.1    Schmittmann, B.2    Zia, R.K.P.3
  • 11
    • 34248219835 scopus 로고    scopus 로고
    • Exact steady-state velocity of ratchets driven by random sequential adsorption
    • D'Orsogna M.R., Chou T., and Antal T. Exact steady-state velocity of ratchets driven by random sequential adsorption. J. Phys. A 40 (2007) 5575-5584
    • (2007) J. Phys. A , vol.40 , pp. 5575-5584
    • D'Orsogna, M.R.1    Chou, T.2    Antal, T.3
  • 12
    • 21244491635 scopus 로고    scopus 로고
    • Nonequilibrium statistical mechanics of the zero-range process and related models
    • Evans M.R., and Hanney T. Nonequilibrium statistical mechanics of the zero-range process and related models. J. Phys. A 38 (2005) R195-R240
    • (2005) J. Phys. A , vol.38
    • Evans, M.R.1    Hanney, T.2
  • 13
    • 63449094990 scopus 로고    scopus 로고
    • Pressurized viruses
    • Gelbart W.M., and Knobler C.M. Pressurized viruses. Science 323 (2009) 1682-1683
    • (2009) Science , vol.323 , pp. 1682-1683
    • Gelbart, W.M.1    Knobler, C.M.2
  • 14
    • 0001008463 scopus 로고
    • Diffusions with collisions between particles
    • Harris T.E. Diffusions with collisions between particles. J. Appl. Probab. 2 (1965) 323-338
    • (1965) J. Appl. Probab. , vol.2 , pp. 323-338
    • Harris, T.E.1
  • 15
    • 70350080607 scopus 로고    scopus 로고
    • Harris, R.J., Rakos, A., Schütz, G.M., 2005. Current fluctuations in the zero-range process with open boundaries. J. Stat. Mech. P08003.
    • Harris, R.J., Rakos, A., Schütz, G.M., 2005. Current fluctuations in the zero-range process with open boundaries. J. Stat. Mech. P08003.
  • 17
    • 33745714419 scopus 로고    scopus 로고
    • Dynamics of DNA ejection from bacteriophage
    • Inamdar M., Gelbart W.M., and Phillips R. Dynamics of DNA ejection from bacteriophage. Biophys. J. 91 (2006) 411-420
    • (2006) Biophys. J. , vol.91 , pp. 411-420
    • Inamdar, M.1    Gelbart, W.M.2    Phillips, R.3
  • 19
    • 0032380399 scopus 로고    scopus 로고
    • Driven tracer particle in one-dimensional symmetric simple exclusion
    • Landim C., Olla S., and Volchan S.B. Driven tracer particle in one-dimensional symmetric simple exclusion. Commun. Math. Phys. 192 (1998) 287-307
    • (1998) Commun. Math. Phys. , vol.192 , pp. 287-307
    • Landim, C.1    Olla, S.2    Volchan, S.B.3
  • 20
    • 0000585550 scopus 로고
    • Lectures in the theory of pattern formation
    • Souletie J., Vannimenus J., and Stora R. (Eds), North-Holland, Amsterdam
    • Langer J.S. Lectures in the theory of pattern formation. In: Souletie J., Vannimenus J., and Stora R. (Eds). Chance and Matter (1987), North-Holland, Amsterdam
    • (1987) Chance and Matter
    • Langer, J.S.1
  • 21
    • 24644510597 scopus 로고    scopus 로고
    • Zero-range process with open boundaries
    • Levine E., Mukamel D., and Schütz G.M. Zero-range process with open boundaries. J. Stat. Phys. 30 (2005) 759-778
    • (2005) J. Stat. Phys. , vol.30 , pp. 759-778
    • Levine, E.1    Mukamel, D.2    Schütz, G.M.3
  • 23
    • 14744279786 scopus 로고    scopus 로고
    • Real-time imaging of DNA ejection from single phage particles
    • Mangenot S., Hochrein M., Radler J., and Letellier L. Real-time imaging of DNA ejection from single phage particles. Curr. Biol. 15 (2005) 430
    • (2005) Curr. Biol. , vol.15 , pp. 430
    • Mangenot, S.1    Hochrein, M.2    Radler, J.3    Letellier, L.4
  • 24
    • 61449215083 scopus 로고    scopus 로고
    • Knot-controlled ejection of a polymer from a virus capsid
    • Matthews R., Louis A.A., and Yeomans J.M. Knot-controlled ejection of a polymer from a virus capsid. Phys. Rev. Lett. 102 (2009) 088101
    • (2009) Phys. Rev. Lett. , vol.102 , pp. 088101
    • Matthews, R.1    Louis, A.A.2    Yeomans, J.M.3
  • 27
    • 0017803051 scopus 로고
    • Packaging DNA in bacteriophage heads-some considerations on energetics
    • Riemer S.C., and Bloomfield V.A. Packaging DNA in bacteriophage heads-some considerations on energetics. Biopolymers 17 (1978) 785-794
    • (1978) Biopolymers , vol.17 , pp. 785-794
    • Riemer, S.C.1    Bloomfield, V.A.2
  • 28
  • 29
    • 0035909370 scopus 로고    scopus 로고
    • The bacteriophage f29 portal motor can package DNA against a large internal force
    • Smith D.E., Tans S.J., Smith S.B., Grimes S., Anderson D.L., and Bustamante C. The bacteriophage f29 portal motor can package DNA against a large internal force. Nature 413 (2001) 748-752
    • (2001) Nature , vol.413 , pp. 748-752
    • Smith, D.E.1    Tans, S.J.2    Smith, S.B.3    Grimes, S.4    Anderson, D.L.5    Bustamante, C.6
  • 30
    • 34547926134 scopus 로고    scopus 로고
    • Transport of single molecules along the periodic parallel lattices with coupling
    • Stukalin E.B., and Kolomeisky A.B. Transport of single molecules along the periodic parallel lattices with coupling. J. Chem. Phys. 124 (2006) 204901
    • (2006) J. Chem. Phys. , vol.124 , pp. 204901
    • Stukalin, E.B.1    Kolomeisky, A.B.2
  • 31
    • 20044370534 scopus 로고    scopus 로고
    • Large deviations in weakly interacting boundary driven lattice gases
    • van Wijland F., and Rácz Z. Large deviations in weakly interacting boundary driven lattice gases. J. Stat. Phys. 118 (2005) 27-54
    • (2005) J. Stat. Phys. , vol.118 , pp. 27-54
    • van Wijland, F.1    Rácz, Z.2


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