Macromolecule-induced assembly of coiled-coils in alternating multiblock polymers

Biomacromolecules

Volumn 10, Issue 10, 2009, Pages 2740-2749

  Sahin, Erinc ^a   Kiick, Kristi L ^a  

^a UNIVERSITY OF DELAWARE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDE BOND FORMATION; ANALYTICAL ULTRACENTRIFUGATION; ANHYDROUS CONDITIONS; BIO-CONJUGATION; BLOCK POLYMER; CIRCULAR DICHROIC SPECTROSCOPIES; COILED COIL; CONTROLLED RELEASE; CONTROLLED SIZE; DILUTE CONCENTRATIONS; ELECTROPHORETIC ANALYSIS; HETERODIMERS; HIGH MOLECULAR WEIGHT; HOMO-OLIGOMERS; MULTIBLOCK POLYMERS; MULTIBLOCKS; NMR SPECTROSCOPY; PHOSPHATE-BUFFERED SALINES; STATIC LIGHT SCATTERING; SYNTHETIC POLYMERS;

AMIDES; AMINES; BLOCK COPOLYMERS; CENTRIFUGATION; CHEMICAL BONDS; CHROMATOGRAPHIC ANALYSIS; CONTROLLED DRUG DELIVERY; LIGHT POLARIZATION; MACROMOLECULES; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PEPTIDES; POLYETHYLENE OXIDES; POLYMERS; SIZE EXCLUSION CHROMATOGRAPHY; THERMOPLASTICS;

POLYETHYLENE GLYCOLS;

AMIDE; ARGININE; GLUTAMIC ACID; HETERODIMER; MACROGOL; PEPTIDE; POLYETHYLENEGLYCOL N HYDROXYSUCCINIMIDE ESTER; POLYMER; SODIUM CHLORIDE; UNCLASSIFIED DRUG;

ARTICLE; CHEMICAL STRUCTURE; DIMERIZATION; MACROMOLECULE; MOLECULAR WEIGHT; PRIORITY JOURNAL; REACTION ANALYSIS; STRUCTURE ANALYSIS;

BIOPOLYMERS; CHROMATOGRAPHY, GEL; CIRCULAR DICHROISM; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDES; PROTEINS; ULTRACENTRIFUGATION;

EID: 70350070112     PISSN: 15257797     EISSN: None     Source Type: Journal    
DOI: 10.1021/bm900474k     Document Type: Article

References (94)

1. Reches, M.; Gazit, E. Science 2003, 300, 625-627.
2. McMillan, R. A.; Paavola, C. D.; Howard, J.; Chan, S. L.; Zaluzec, N. J.; Trent, J. D. Nat. Mater. 2002, 1, 247-252
3. Meldrum, F. C.; Heywood, B. R.; Mann, S. Science 1992, 257, 522-523.
4. Kim, J.-W.; Choi, S. H.; Lillehei, P. T.; Chu, S.-H.; King, G. C.; Watt, G. D. Chem. Commun. 2005, 4101-4103.
5. Kramer, R. M.; Li, C.; Carter, D. C.; Stone, M. O.; Naik, R. R. J. Am. Chem. Soc. 2004, 126, 13282-13286.
6. Slocik, J. M.; Naik, R. R.; Stone, M. O.; Wright, D. W. J. Mater. Chem. 2005, 749-753.
7. Zhang, S. Nat. Biotechnol. 2003, 21, 1171-1178.
8. Flynn, C. E.; Lee, S.-W.; Peelle, B. R.; Belcher, A. M. Acta Mater. 2003, 51, 5867-5880.
9. Lee, S.-W.; Mao, C.; Flynn, C. E.; Belcher, A. M. Science 2002, 296, 892-895.
10. Nam, K. T.; Kim, D.-W.; Yoo, P. J.; Chiang, C.-Y.; Meethong, N.; Hammond, P. T.; Chiang, Y.-M.; Belcher, A. M. Science 2006, 312, 885-888.
11. Fischlechner, M.; Donath, E. Angew. Chem., Int. Ed. 2007, 46, 3184-3193.
12. Ryadnov, M. G.; Woolfson, D. N. Nat. Mater. 2003, 2, 329-332.
13. MacPhee, C. E.; Woolfson, D. N. Curr. Opin. Solid State Mat. 2004, 8, 141-149.
14. Woolfson, D. N.; Ryadnov, M. G. Curr. Opin. Chem. Biol. 2006, 10, 559-567.
15. Mertig, M.; Kirsch, R.; Pompe, W.; Wahl, R.; Bohm, K. J.; Unger, E.; Sadowski, G. Thin Solid Films 1997, 305, 248-253.
16. Mertig, M.; Kirsch, R.; Pompe, W. Appl. Phys. A 1998, 66, S723-S727.
17. Nagarkar, R. P.; Hule, R. A.; Pochan, D. J.; Schneider, J. P. J. Am. Chem. Soc. 2008, 130, 4466-4474.
18. Rajagopal, K.; Schneider, J. P. Curr. Opin. Struct. Biol. 2004, 14, 480-486.
19. Schneider, J. P.; Pochan, D. J.; Ozbas, B.; Rajagopal, K.; Pakstis, L.; Kretsinger, J. J. Am. Chem. Soc. 2002, 124, 15030-15037.
20. Scheibel, T.; Parthasarathy, R.; Sawicki, G.; Lin, X. M.; Jaeger, H.; Lindquist, S. L. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 4527-4532.
21. Patolsky, F.; Weizmann, Y.; Willner, I. Nat. Mater. 2004, 3, 692-695.
22. Potekhin, S. A.; Melnik, T. N.; Popov, V.; Lanina, N. F.; Vazina, A. A.; Rigler, P.; Verdini, A. S.; Corradin, G.; Kajava, A. V. Chem. Biol. 2001, 8, 1025-1032.
23. Zimenkov, Y.; Conticello, V. P.; Guo, L.; Thiyagarajan, P. Tetrahedron 2004, 60, 7237-7246.
24. Aggeli, A.; Bell, M.; Carrick, L. M.; Fishwick, C. W. G.; Harding, R.; Mawer, P. J.; Radford, S. E.; Strong, A. E.; Boden, N. J. Am. Chem. Soc. 2003, 125, 9619-9628.
25. Yamaguchi, N.; Zhang, L.; Chae, B. S.; Palla, C. S.; Furst, E. M.; Kiick, K. L. J. Am. Chem. Soc. 2007, 129, 3040-3041.
26. Kammerer, R. A.; Kostrewa, D.; Zurdo, J.; Detken, A.; Garcia-Echeverria, C.; Green, J. D.; Muller, S. A.; Meier, B. H.; Winkler, F. K.; Dobson, C. M.; Steinmetz, M. O. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 4435-4440.
27. Esser-Kahn, A. P.; Matthew, B. F. Angew. Chem., Int. Ed. 2008, 47, 3751-3754.
28. Heredia, K. L.; Maynard, H. D. Org. Biomol. Chem. 2007, 5, 45-53.
29. Rathore, O.; Sogah, D. Y. J. Am. Chem. Soc. 2001, 123, 5231-5239.
30. Rosler, A.; Klok, H. A.; Hamley, I. W.; Castelletto, V.; Mykhaylyk, O. O. Biomacromolecules 2003, 4, 859-863.
31. Vandermeulen, G. W. M.; Tziatzios, C.; Duncan, R.; Klok, H. A. Macromolecules 2005, 38, 761-769.
32. Becker, M. L.; Liu, J.; Wooley, K. L. Chem. Commun. (Cambridge, U.K.) 2003, 180-181.
33. Duncan, R. Nat. Rev. Drug Discovery 2003, 2, 34-360.
34. Harris, J. M.; Chess, R. B. Nat. Rev. Drug Discovery 2003, 2, 214-221.
35. Pechar, M. K. P.; Joss, L.; Kopecek, J. Macromol. Biosci., 2002, 2, 199-206.
36. Ayres, L.; Hans, P.; Dennis, J. A.; Löwik, W. P. M.; van Hest, J. C. M. J. Polym. Sci., Part A 2005, 43, 6355-6366.
37. Marsden, H. R.; Korobko, A. V.; van Leeuwen, E. N. M.; Pouget, E. M.; Veen, S. J.; Sommerdijk, N. A. J. M.; Kros, A. J. Am. Chem. Soc. 2008, 130, 9386-9393.
38. Wang, C.; Stewart, R. J.; Kopecek, J. Nature 1999, 397, 417-420.
39. Lavasanifar, A.; Samuel, J.; Kwon, G. S. Adv. Drug Delivery Rev. 2002, 54, 169-190.
40. Vandermeulen, G. W. M.; Hinderberger, D.; Xu, H.; Sheiko, S. S.; Jeschke, G.; Klok, H.-A. ChemPhysChem 2004, 5, 488-494.
41. Pechar, M.; Brus, J.; Kostka, L.; Konak, C.; Urbanova, M.; Slouf, M. Macromol. Biosci. 2007, 7, 56-69.
42. Goh, S. L.; Platt, A. P.; Rutledge, K. E.; Lee, I. J. Polym. Sci., Part A 2008, 46, 5381-5389.
43. Yang, J.; Xu, C.; Kopeckova, P.; Kopecek, J. Macromol. Biosci. 2006, 6, 201-209.
44. Yang, J.; Xu, C.; Wang, C.; Kopecek, J. Biomacromolecules 2006, 7, 1187-1195.
45. Yang, J.; Wu, K.; Konak, C.; Kopecek, J. Biomacromolecules 2008, 9, 510-517.
46. Shu, J. Y.; Tan, C.; DeGrado, W. F.; Xu, T. Biomacromolecules 2008, 9, 2111-2117.
47. Grieshaber, S.; Farran, A. J. E.; Lin-Gibson, S.; Kiick, K. L.; Jia, X. Macromolecules 2009, 42, 2532-2541.
48. Wright, E. R.; Conticello, V. P. Adv. Drug Delivery Rev. 2002, 54, 1057-1073.
49. Nie, T.; Zhao, Y.; Xie, Z.; Wu, C. Macromolecules 2003, 36, 8825-8829.
50. Wu, C.; Xie, Z.; Zhang, G.; Zi, G.; Tu, Y.; Yang, Y.; Cai, P.; Nie, T. Chem. Commun. 2002, 2898-2899.
51. O'Neil, K. T.; DeGrado, W. F. Science 1990, 250, 646-651.
52. Dahiyat, B. I.; Gordon, D. B.; Mayo, S. L. Protein Sci. 1997, 6, 1333-1337.
53. Arndt, K. M.; Müller, K. M. Protein engineering protocols, Illustrated ed.; Humana Press: Clifton, NJ, 2006.
54. Novabiochem/EMDBiosciences Novabiochem 2006-2007 Catalog; CALBIOCHEM: Gibbstown, NJ, 2006-2007.
55. Reed, J.; Reed, T. A. Anal. Biochem. 1997, 254, 36-40.
56. Amon, M. A.; Ali, M.; Bender, V.; Hall, K.; Aguilar, M. I.; Aldrich-Wright, J.; Manolios, N. J. Pept. Sci. 2008, 14, 714-724.
57. Yang, Y. T.; Wu, C. S. C.; Martinez, H. M. Methods Enzymol. 1986, 130, 208-257.
58. Matsuo, K.; Yonehara, R.; Gekko, K. J. Biochem. 2004, 135, 405-411.
59. Nasser Brumano, M. H.; Rogana, E.; Swaisgood, H. E. Arch. Biochem. Biophys. 2000, 382, 57-62.
60. Krylov, D.; Barchi, J.; Vinson, C. J. Mol. Biol. 1998, 279, 959-972.
61. Phelan, P.; Gorfe, A. A.; Jelesarov, I.; Marti, D. N.; Warwicker, J.; Bosshard, H. R. Biochemistry 2002, 41, 2998-3008.
62. Seldeen, K. L.; McDonald, C. B.; Deegan, B. J.; Farooq, A. Biochem. Biophys. Res. Commun. 2008, 375, 634-638.
63. Schuck, P. Biophys. J. 2000, 78, 1606-1619.
64. Schuck, P. Anal. Biochem. 2003, 320, 104-124.
65. McRorie, D. K.; Voelker, P. J. Self-Associating Systems in the Analytical Ultracentrifuge [Online]; Beckman Coulter: Palto Alto, CA, http://www. beckmancoulter.com/literature/Bioresearch/362784.pdf.
66. Ralston, G. Introduction to Analytical Ultracentrifugation [Online]; Beckman Coulter: Palto Alto, CA, http://www.beckmancoulter.com/literature/ Bioresearch/361847.pdf.
67. Laue, T. M.; Shah, B. D.; Ridgeway, T. M.; Pelletier, S. L. In Analytical Ultracentrifugation in Biochemistry and Polymer Science; Harding, S. E., Ed.; Royal Society of Chemistry: Cambridge, U.K., 1992.
68. Moll, J. R.; Ruvinov, S. B.; Pastan, I.; Vinson, C. Protein Sci. 2001, 10, 649-655.
69. Harper, E. T.; Rose, G. D. Biochemistry 1993, 32, 7605-7609.
70. Farrer, B. T.; Pecoraro, V. L. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 3760-3765.
71. Odian, G. Principles of Polymerization, 4th ed.; John Wiley & Sons, Inc.: Hoboken, NJ, 2004.
72. Parsegian, V. A.; Rand, R. P.; Fuller, N. L.; Rau, D. C. Methods Enzymol. 1986, 127, 400-416
73. Stanley, C. B.; Hong, H.; Strey, H. H. Biophys. J. 2005, 89, 2552-2557.
74. Strey, H. H.; Parsegian, V. A.; Podgornik, R. Phys. Rev. Lett. 1997, 78, 895-898.
75. Fink, A. L. Fold. Des. 1998, 3, R9-R23.
76. Dobson, C. M. Semin. Cell Dev. Biol. 2004, 15, 3-16.
77. Eisenberg, D.; Nelson, R.; Sawaya, M. R.; Balbirnie, M.; Sambashivan, S.; Ivanova, M. I.; Madsen, A. O.; Riekel, C. Acc. Chem. Res. 2006, 39, 568-575.
78. Rousseau, F.; Schymkowitz, J.; Serrano, L. Curr. Opin. Struct. Biol. 2006, 16, 118-126.
79. Marsden, H. R.; Korobko, A. V.; van Leeuwen, E. N. M.; Pouget, E. M.; Veen, S. J.; Sommerdijk, N. A. J. M.; Kros, A. J. Am. Chem. Soc. 2008, 130, 9386-9393.
80. Borders, C. L., Jr.; Broadwater, J. A.; Bekeny, P. A.; Salmon, J. E.; Lee, A. S.; Eldridge, A. M.; Pett, V. B. Protein Sci. 1994, 3, 541-548.
81. Cherney, L. T.; Cherney, M. M.; Garen, C. R.; Lu, G. J.; James, M. N. G. J. Mol. Biol. 2008, 384, 1330-1340.
82. Tang, M.; Waring, A. J.; Hong, M. J. Am. Chem. Soc. 2007, 129, 11438-11446.
83. Hasek, J. Z. Kristallogr. 2006, 2006, 613-618.
84. Galaev, I.; Mattiasson, B. Smart Polymers: Applications in Biotechnology and Biomedicine, 2nd ed.; Taylor & Francis Group, CRC Press: Boca Raton, FL, 2008.
85. Loscalzo, J.; Slayter, H.; Handin, R. I.; Farber, D. Biophys. J. 1986, 49, 49-50.
86. Burchard, W. In Laser Light Scattering in Biochemistry; Harding, S. E. D. B. S., Bloomfield, V. A. Ed.; Royal Society of Chemistry: Cambridge, 1992.
87. Kawaguchi, S.; Imai, G.; Suzuki, J.; Miyahara, A.; Kitano, T.; Ito, K. Polymer 1997, 38, 2885-2891.
88. Creighton, T. E. Proteins: structures and molecular properties, 2nd ed.; Macmillan: New York, 1993.
89. Hiemenz, P. C.; Rajagopalan, R. Principles of Colloid and Surface Chemistry, 3rd ed.; Marcel Dekker, Inc.: New York, NY, 1997.
90. Ivanchenko, M. I.; Kobayashi, H.; Kulik, E. A.; Dobrova, N. B. Anal. Chim. Acta 1995, 314, 23-31.
91. Pandya, M. J.; Spooner, G. M.; Sunde, M.; Thorpe, J. R.; Rodger, A.; Woolfson, D. N. Biochemistry 2000, 39, 8728-8734.
92. Papapostolou, D.; Smith, A. M.; Atkins, E. D.; Oliver, S. J.; Ryadnov, M. G.; Serpell, L. C.; Woolfson, D. N. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 10853-10858
93. Dong, H.; Paramonov, S. E.; Hartgerink, J. D. J. Am. Chem. Soc. 2008, 130, 13691-13695.
94. Krasilnikov, O. V.; Bezrukov, S. M. Macromolecules 2004, 37, 2650-2657.