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Volumn 135, Issue 3, 2004, Pages 405-411

Secondary-Structure Analysis of Proteins by Vacuum-Ultraviolet Circular Dichroism Spectroscopy

Author keywords

Proteins; Secondary structure analysis; Synchrotron radiation; Vacuum ultraviolet circular dichroism

Indexed keywords

ALPHA LACTALBUMIN; BETA LACTOGLOBULIN; CHYMOTRYPSINOGEN; CONCANAVALIN A; CYTOCHROME C; GLOBULAR PROTEIN; HEMOGLOBIN; LYSOZYME; MYOGLOBIN; OVALBUMIN; PEPSIN A; PEROXIDASE; RIBONUCLEASE A; SERUM ALBUMIN; TRYPSIN INHIBITOR; TRYPSINOGEN;

EID: 1942424127     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/jb/mvh048     Document Type: Article
Times cited : (110)

References (27)
  • 1
    • 0028959773 scopus 로고
    • Circular dichroism
    • Woody, R.W. (1995) Circular dichroism. Methods Enzymol. 246, 34-71
    • (1995) Methods Enzymol. , vol.246 , pp. 34-71
    • Woody, R.W.1
  • 2
    • 0027447099 scopus 로고
    • A self-consistent method for the analysis of protein secondary structure from circular dichroism
    • Sreerama, N. and Woody, R.W. (1993) A self-consistent method for the analysis of protein secondary structure from circular dichroism. Anal. Biochem. 209, 32-44
    • (1993) Anal. Biochem. , vol.209 , pp. 32-44
    • Sreerama, N.1    Woody, R.W.2
  • 3
    • 0019871893 scopus 로고
    • Information content in the circular dichroism of proteins
    • Hennessey, J.P. Jr. and Johnson, W.C., Jr. (1981) Information content in the circular dichroism of proteins. Biochemistry 20, 1085-1094
    • (1981) Biochemistry , vol.20 , pp. 1085-1094
    • Hennessey Jr., J.P.1    Johnson Jr., W.C.2
  • 4
    • 0026599616 scopus 로고
    • Extending CD spectra of proteins to 168 nm improves the analysis for secondary structures
    • Toumadje, A., Alcorn, S.W., and Johnson, W.C., Jr. (1992) Extending CD spectra of proteins to 168 nm improves the analysis for secondary structures. Anal. Biochem. 200, 321-331
    • (1992) Anal. Biochem. , vol.200 , pp. 321-331
    • Toumadje, A.1    Alcorn, S.W.2    Johnson Jr., W.C.3
  • 5
    • 0034672325 scopus 로고    scopus 로고
    • Estimation of protein secondary structure from circular dichroism spectra: Comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set
    • Sreerama, N. and Woody, R.W. (2000) Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. Anal. Biochem. 287, 252-260
    • (2000) Anal. Biochem. , vol.287 , pp. 252-260
    • Sreerama, N.1    Woody, R.W.2
  • 6
    • 0033042935 scopus 로고    scopus 로고
    • Estimation of number of α-helical and β-strand segments in proteins using circular dichroism spectroscopy
    • Sreerama, N., Venyaminov, S.Y., and Woody, R.W. (1999) Estimation of number of α-helical and β-strand segments in proteins using circular dichroism spectroscopy. Protein Sci. 8, 370-380
    • (1999) Protein Sci. , vol.8 , pp. 370-380
    • Sreerama, N.1    Venyaminov, S.Y.2    Woody, R.W.3
  • 7
    • 0028063528 scopus 로고
    • Determination of protein tertiary structure class from circular dichroism spectra
    • Venyaminov, S.Y. and Vassilenko, K.S. (1994) Determination of protein tertiary structure class from circular dichroism spectra. Anal. Biochem. 222, 176-184
    • (1994) Anal. Biochem. , vol.222 , pp. 176-184
    • Venyaminov, S.Y.1    Vassilenko, K.S.2
  • 8
    • 36849156983 scopus 로고
    • Sensitivity of circular dichroism to protein tertiary structure class
    • Manavalan, P. and Johnson, W.C., Jr. (1983) Sensitivity of circular dichroism to protein tertiary structure class. Nature 305, 831-832
    • (1983) Nature , vol.305 , pp. 831-832
    • Manavalan, P.1    Johnson Jr., W.C.2
  • 9
    • 0000012395 scopus 로고
    • The first use of synchrotron radiation for vacuum ultraviolet circular dichroism measurements
    • Snyder, P.A. and Rowe, E.M. (1980) The first use of synchrotron radiation for vacuum ultraviolet circular dichroism measurements. Nucl. Instrum. Methods 172, 345-349
    • (1980) Nucl. Instrum. Methods , vol.172 , pp. 345-349
    • Snyder, P.A.1    Rowe, E.M.2
  • 10
    • 17144452809 scopus 로고
    • Versatile spectrometer for experiments using synchrotron radiation at wavelength greater than 100 nm
    • Sutherland, J.C., Desmond, E.J., and Takacs, P.Z. (1980) Versatile spectrometer for experiments using synchrotron radiation at wavelength greater than 100 nm. Nucl. Instrum. Methods 172, 195-199
    • (1980) Nucl. Instrum. Methods , vol.172 , pp. 195-199
    • Sutherland, J.C.1    Desmond, E.J.2    Takacs, P.Z.3
  • 11
    • 0026745061 scopus 로고
    • Circular dichroism user facility at the National Synchrotron Light Source: Estimation of protein secondary structure
    • Sutherland, J.C., Emrick, A., France, L.L., Monteleone, D.C., and Trunk, J. (1992) Circular dichroism user facility at the National Synchrotron Light Source: estimation of protein secondary structure. Biotechniques 13, 588-590
    • (1992) Biotechniques , vol.13 , pp. 588-590
    • Sutherland, J.C.1    Emrick, A.2    France, L.L.3    Monteleone, D.C.4    Trunk, J.5
  • 12
    • 0033823129 scopus 로고    scopus 로고
    • Conformational changes by synchrotron radiation circular dichroism spectroscopy
    • Wallace, B.A. (2000) Conformational changes by synchrotron radiation circular dichroism spectroscopy. Nat. Struct. Biol. 7, 708-709
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 708-709
    • Wallace, B.A.1
  • 13
    • 0035478472 scopus 로고    scopus 로고
    • Synchrotron radiation circular dichroism spectroscopy of proteins: Secondary structure, fold recognition and structural geomics
    • Wallace, B.A. and Janes, R.W. (2001) Synchrotron radiation circular dichroism spectroscopy of proteins: secondary structure, fold recognition and structural geomics. Curr. Opin. Chem. Biol. 5, 567-571
    • (2001) Curr. Opin. Chem. Biol. , vol.5 , pp. 567-571
    • Wallace, B.A.1    Janes, R.W.2
  • 14
    • 0034354737 scopus 로고    scopus 로고
    • Vacuum-ultraviolet circular dichroism spectrophotometer using synchrotron radiation: Optical system and off-line performance
    • Ojima, N., Sakai, K., Fukazawa, T., and Gekko, K. (2000) Vacuum-ultraviolet circular dichroism spectrophotometer using synchrotron radiation: optical system and off-line performance. Chem. Lett. 832-833
    • (2000) Chem. Lett. , pp. 832-833
    • Ojima, N.1    Sakai, K.2    Fukazawa, T.3    Gekko, K.4
  • 15
    • 0035605558 scopus 로고    scopus 로고
    • Vacuum-ultraviolet circular dichroism spectrophotometer using synchrotron radiation: Optical system and on-line performance
    • Ojima, N., Sakai, K., Matsuo, K., Matsui, T., Fukazawa, T., Namatame, H., Taniguchi, M., and Gekko, K. (2001) Vacuum-ultraviolet circular dichroism spectrophotometer using synchrotron radiation: optical system and on-line performance. Chem. Lett. 522-523
    • (2001) Chem. Lett. , pp. 522-523
    • Ojima, N.1    Sakai, K.2    Matsuo, K.3    Matsui, T.4    Fukazawa, T.5    Namatame, H.6    Taniguchi, M.7    Gekko, K.8
  • 16
    • 0037025485 scopus 로고    scopus 로고
    • Vacuum-ultraviolet circular dichroism of amino acids as revealed by synchrotron radiation spectrophotometer
    • Matsuo, K., Matsushima, Y., Fukuyama, T., Senba, S., and Gekko, K. (2002) Vacuum-ultraviolet circular dichroism of amino acids as revealed by synchrotron radiation spectrophotometer. Chem. Lett. 826-827
    • (2002) Chem. Lett. , pp. 826-827
    • Matsuo, K.1    Matsushima, Y.2    Fukuyama, T.3    Senba, S.4    Gekko, K.5
  • 17
    • 0037262755 scopus 로고    scopus 로고
    • Optical cell with a temperature-control unit for a vacuum-ultraviolet circular dichroism spectrophotometer
    • Matsuo, K., Sakai, K., Matsushima, Y., Fukuyama, T., and Gekko, K. (2003) Optical cell with a temperature-control unit for a vacuum-ultraviolet circular dichroism spectrophotometer. Anal. Sci. 19, 129-132
    • (2003) Anal. Sci. , vol.19 , pp. 129-132
    • Matsuo, K.1    Sakai, K.2    Matsushima, Y.3    Fukuyama, T.4    Gekko, K.5
  • 18
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen bonded and geometric feature
    • Kabsch, W. and Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen bonded and geometric feature. Biopolymers 22, 2577-2637
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 19
    • 0001926888 scopus 로고    scopus 로고
    • Circular dichroism of peptides and proteins
    • (Berova, N., Nakanishi, K., and Woody, R.W., eds.), Willy-VCH Press, New York
    • Koslowski, A., Sreerama, N., and Woody, R.W. (2000) Circular dichroism of peptides and proteins in Circular dichroism: Principles and Applications (Berova, N., Nakanishi, K., and Woody, R.W., eds.) pp. 55-95, Willy-VCH Press, New York
    • (2000) Circular Dichroism: Principles and Applications , pp. 55-95
    • Koslowski, A.1    Sreerama, N.2    Woody, R.W.3
  • 20
    • 0037058903 scopus 로고    scopus 로고
    • Recent development in the electronic spectroscopy of amides and α-helical polypeptides
    • Woody, R.W. and Koslowski, A. (2002) Recent development in the electronic spectroscopy of amides and α-helical polypeptides. Biophys. Chem. 101-102, 535-551
    • (2002) Biophys. Chem. , vol.101-102 , pp. 535-551
    • Woody, R.W.1    Koslowski, A.2
  • 21
    • 0019005874 scopus 로고
    • Determination of protein secondary structure in solution by vacuum ultraviolet circular dichroism
    • Brahms, S. and Brahms, J. (1980) Determination of protein secondary structure in solution by vacuum ultraviolet circular dichroism. J. Mol. Biol. 138, 149-178
    • (1980) J. Mol. Biol. , vol.138 , pp. 149-178
    • Brahms, S.1    Brahms, J.2
  • 22
    • 0016842180 scopus 로고
    • Vacuum ultraviolet circular dichroism of poly(L-proline) I and II
    • Young, M.A. and Pysh, E.S. (1975) Vacuum ultraviolet circular dichroism of poly(L-proline) I and II. J. Amer. Chem. Soc. 97, 5100-5103
    • (1975) J. Amer. Chem. Soc. , vol.97 , pp. 5100-5103
    • Young, M.A.1    Pysh, E.S.2
  • 23
    • 0014378447 scopus 로고
    • Circular dichroism of poly-L-proline in an unordered conformation
    • Tiffany, M.L. and Krimm, S. (1968) Circular dichroism of poly-L-proline in an unordered conformation. Biopolymers 6, 1767-1770
    • (1968) Biopolymers , vol.6 , pp. 1767-1770
    • Tiffany, M.L.1    Krimm, S.2
  • 24
    • 0002251831 scopus 로고
    • Circular dichroism and conformation of unordered peptides
    • Woody, R.W. (1992) Circular dichroism and conformation of unordered peptides. Adv. Biophys. Chem. 2, 37-79
    • (1992) Adv. Biophys. Chem. , vol.2 , pp. 37-79
    • Woody, R.W.1
  • 25
    • 0037302324 scopus 로고    scopus 로고
    • Structural composition of βI- and βII-proteins
    • Sreerama, N. and Woody, R.W. (2003) Structural composition of βI- and βII-proteins. Protein Sci. 12, 384-388
    • (2003) Protein Sci. , vol.12 , pp. 384-388
    • Sreerama, N.1    Woody, R.W.2
  • 27
    • 0033081266 scopus 로고    scopus 로고
    • Novel matrix descriptor for secondary structure segments in proteins: Demonstration of predictability from circular dichroism spectra
    • Pancoska, P., Janota, V., and Keiderling, T.A. (1999) Novel matrix descriptor for secondary structure segments in proteins: demonstration of predictability from circular dichroism spectra. Anal. Biochem. 267, 72-83
    • (1999) Anal. Biochem. , vol.267 , pp. 72-83
    • Pancoska, P.1    Janota, V.2    Keiderling, T.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.