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Volumn 17, Issue 3, 2009, Pages 315-341

A survey on OR and mathematical methods applied on gene-environment networks

Author keywords

Computational biology; Computational statistics; Dynamical systems; Environmental protection; Financial mathematics; Gene environment networks; Generalized semi infinite programming; Identification; Operational research; Structural stability; Uncertainty

Indexed keywords


EID: 70350037708     PISSN: 1435246X     EISSN: 16139178     Source Type: Journal    
DOI: 10.1007/s10100-009-0092-4     Document Type: Article
Times cited : (29)

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    • Taylan P, Weber GW, Urgan NN (2009) On the parameter estimation for generalized partial linear models with B-Splines and continuous optimization, preprint at institute of applied mathematics, (submitted to TOP).
  • 68
    • 75749145693 scopus 로고    scopus 로고
    • Taylan P, Weber GW, Yerlikaya F (2008) Continuous optimization applied in MARS for modern applications in finance, science and technology (to appear in the ISI Proceedings of 20th Mini-EURO Conference Continuous Optimization and Knowledge-Based Technologies, May 20-23, Neringa, Lithuania)
    • Taylan P, Weber GW, Yerlikaya F (2008) Continuous optimization applied in MARS for modern applications in finance, science and technology (to appear in the ISI Proceedings of 20th Mini-EURO Conference Continuous Optimization and Knowledge-Based Technologies, May 20-23, Neringa, Lithuania).
  • 70
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    • Tijs SH, Branzei R (2004) Cost sharing in a joint project. In: Carraro C, Fragnelli V (eds) Game practice and the environment. Fondazione Eni Enrico Mattei, pp 113-124
    • Tijs SH, Branzei R (2004) Cost sharing in a joint project. In: Carraro C, Fragnelli V (eds) Game practice and the environment. Fondazione Eni Enrico Mattei, pp 113-124.
  • 71
    • 70350033182 scopus 로고    scopus 로고
    • Uǧur Ö, Pickl SW, Weber GW, Wünschiers R (2006) Operational research meets biology: an algorithmic approach to analyze genetic networks and biological energy production, preprint no. 50, Institute of Applied Mathematics, METU, 2006, (submitted for the special issue of Optimization at the occasion of the 5th Ballarat Workshop on Global and Non-Smooth Optimization: Theory, Methods, and Applications, November 28-30, 2006)
    • Uǧur Ö, Pickl SW, Weber GW, Wünschiers R (2006) Operational research meets biology: an algorithmic approach to analyze genetic networks and biological energy production, preprint no. 50, Institute of Applied Mathematics, METU, 2006, (submitted for the special issue of Optimization at the occasion of the 5th Ballarat Workshop on Global and Non-Smooth Optimization: Theory, Methods, and Applications, November 28-30, 2006).
  • 72
    • 56249102925 scopus 로고    scopus 로고
    • Uǧur Ö, Weber GW (2007) Optimization and dynamics of gene-environment networks with intervals. In: the special issue at the occasion of the 5th Ballarat workshop on global and non-smooth optimization: theory, methods and applications, November 28-30, 2006, of journal of industrial management and optimization 3(2), 357-379 (May 2007)
    • Uǧur Ö, Weber GW (2007) Optimization and dynamics of gene-environment networks with intervals. In: the special issue at the occasion of the 5th Ballarat workshop on global and non-smooth optimization: theory, methods and applications, November 28-30, 2006, of journal of industrial management and optimization 3(2), 357-379 (May 2007).
  • 73
    • 70350035204 scopus 로고    scopus 로고
    • Weber GW (1992) Charakterisierung struktureller Stabilität in der nichtlinearen Optimierung. In: Bock HH, Jongen HT, Plesken W (eds) Aachener Beiträge zur Mathematik, vol 5. Augustinus publishing house (now: Mainz publishing house) Aachen
    • Weber GW (1992) Charakterisierung struktureller Stabilität in der nichtlinearen Optimierung. In: Bock HH, Jongen HT, Plesken W (eds) Aachener Beiträge zur Mathematik, vol 5. Augustinus publishing house (now: Mainz publishing house) Aachen.
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    • 0013533255 scopus 로고    scopus 로고
    • Generalized semi-infinite optimization: On iteration procedures and topological aspects
    • B. Kröplin, S. Rudolph, S. Brückner (Eds.), Stuttgart,: International Workshop, Institute for Statics and Dynamics of Aerospace Structures
    • Weber GW (1998) Generalized semi-infinite optimization: on iteration procedures and topological aspects. In: Kröplin B, Rudolph S, Brückner S(eds) Similarity methods. International Workshop, Institute for Statics and Dynamics of Aerospace Structures, Stuttgart, pp 281-309.
    • (1998) Similarity Methods , pp. 281-309
    • Weber, G.W.1
  • 75
    • 0013534981 scopus 로고    scopus 로고
    • Generalized semi-infinite optimization: On some foundations
    • Weber GW (1999) Generalized semi-infinite optimization: on some foundations. J Comput Technolog 4(3): 41-61.
    • (1999) J Comput Technolog , vol.4 , Issue.3 , pp. 41-61
    • Weber, G.W.1
  • 76
    • 70350001304 scopus 로고    scopus 로고
    • Weber GW (2003) Generalized Semi-Infinite Optimization and Related Topics. In: Hofmannn KH, Wille R (eds) Heldermann publishing house, Research and exposition in Mathematics, vol 29. Lemgo
    • Weber GW (2003) Generalized Semi-Infinite Optimization and Related Topics. In: Hofmannn KH, Wille R (eds) Heldermann publishing house, Research and exposition in Mathematics, vol 29. Lemgo.
  • 77
    • 70350021949 scopus 로고    scopus 로고
    • Weber GW, Alparslan-Gök SZ, Dikmen N (2009) Environmental and life sciences: gene-environment networks-optimization, games and control-a survey on recent achievements, preprint at Institute of Applied Mathematics, invited paper, the special issue of Journal of Organisational Transformation and Social Change, guest editor: DeTombe D (to appear)
    • Weber GW, Alparslan-Gök SZ, Dikmen N (2009) Environmental and life sciences: gene-environment networks-optimization, games and control-a survey on recent achievements, preprint at Institute of Applied Mathematics, invited paper, the special issue of Journal of Organisational Transformation and Social Change, guest editor: DeTombe D (to appear).
  • 78
    • 62749181090 scopus 로고    scopus 로고
    • Weber GW, Alparslan-Gök SZ, Söyler B (2007) A new mathematical approach in environmental and life sciences: gene-environment networks and their dynamics. To appear in Environmental Modeling & Assessment, doi:10.1007/s10666-007-9137-z
    • Weber GW, Alparslan-Gök SZ, Söyler B (2007) A new mathematical approach in environmental and life sciences: gene-environment networks and their dynamics. To appear in Environmental Modeling & Assessment, doi:10.1007/s10666-007-9137-z.
  • 79
    • 56249086455 scopus 로고    scopus 로고
    • Weber GW, Taylan P, Alparslan-Gök SZ, Özöǧür S, Akteke-Öztürk B (2008a) Optimization of gene-environment networks in the presence of errors and uncertainty with Chebychev approximation, to appear in TOP, the Operational Research journal of SEIO (Spanish Statistics and Operations Research Society), doi:10.1007/s11750-008-0052-5
    • Weber GW, Taylan P, Alparslan-Gök SZ, Özöǧür S, Akteke-Öztürk B (2008a) Optimization of gene-environment networks in the presence of errors and uncertainty with Chebychev approximation, to appear in TOP, the Operational Research journal of SEIO (Spanish Statistics and Operations Research Society), doi:10.1007/s11750-008-0052-5.
  • 80
    • 40549116847 scopus 로고    scopus 로고
    • On generalized semi-infinite optimization of genetic networks
    • Weber GW, Tezel A (2007) On generalized semi-infinite optimization of genetic networks. TOP 15(1): 65-77.
    • (2007) TOP , vol.15 , Issue.1 , pp. 65-77
    • Weber, G.W.1    Tezel, A.2
  • 81
    • 70350017542 scopus 로고    scopus 로고
    • Weber GW, Tezel A, Taylan P, Soyler A, Çetin M (2008b) Mathematical contributions to dynamics and optimization of gene-environment networks, to appear in Special Issue: In Celebration of Prof. Dr. Dr. Hubertus Th. Jongen's 60th Birthday, guest editors: Pallaschke D, Stein O, of Optimization 57, 2
    • Weber GW, Tezel A, Taylan P, Soyler A, Çetin M (2008b) Mathematical contributions to dynamics and optimization of gene-environment networks, to appear in Special Issue: In Celebration of Prof. Dr. Dr. Hubertus Th. Jongen's 60th Birthday, guest editors: Pallaschke D, Stein O, of Optimization 57, 2.
  • 82
    • 67349274997 scopus 로고    scopus 로고
    • Weber GW, Uǧur Ö, Taylan P, Tezel A (2009) On optimization, dynamics and uncertainty: a tutorial for gene-environment networks. the special issue networks in computational biology of Discrete Applied Mathematics (to appear)
    • Weber GW, Uǧur Ö, Taylan P, Tezel A (2009) On optimization, dynamics and uncertainty: a tutorial for gene-environment networks. the special issue networks in computational biology of Discrete Applied Mathematics (to appear).
  • 83
    • 70350017536 scopus 로고    scopus 로고
    • Yerlikaya F, Weber GW, Batmas I, Köksal G, Taylan P (2008) MARS Algoritmasi{dotless}nda Tikhonov düzenlemesi ve çok amaçli optimizasyon kullanimi (to appear in the proceedings of the Annual Conference of OR Society of Turkey, Galatasaray University, Istanbul, Turkey, June 30-July 2, 2008)
    • Yerlikaya F, Weber GW, Batmas I, Köksal G, Taylan P (2008) MARS Algoritmasi{dotless}nda Tikhonov düzenlemesi ve çok amaçli optimizasyon kullanimi (to appear in the proceedings of the Annual Conference of OR Society of Turkey, Galatasaray University, Istanbul, Turkey, June 30-July 2, 2008).
  • 84
    • 70350009371 scopus 로고    scopus 로고
    • Yi{dotless}lmaz FB (2004) A mathematical modeling and approximation of gene expression patterns by linear and quadratic regulatory relations and analysis of gene networks. Institute of Applied Mathematics, METU, MSc Thesis
    • Yi{dotless}lmaz FB (2004) A mathematical modeling and approximation of gene expression patterns by linear and quadratic regulatory relations and analysis of gene networks. Institute of Applied Mathematics, METU, MSc Thesis.
  • 85
    • 70350019917 scopus 로고    scopus 로고
    • Yi{dotless}lmaz FB, Öktem H, Weber GW (2005) Mathematical modeling and approximation of gene expression patterns and gene networks. In: Fleuren F, den Hertog D, Kort P (eds) Operations research proceedings, pp 280-287
    • Yi{dotless}lmaz FB, Öktem H, Weber GW (2005) Mathematical modeling and approximation of gene expression patterns and gene networks. In: Fleuren F, den Hertog D, Kort P (eds) Operations research proceedings, pp 280-287.


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