Microsatellite diversity and effective population size in a germplasm bank of Hymenaea courbaril var. stilbocarpa (Leguminosae), an endangered tropical tree: Recommendations for conservation

Genetic Resources and Crop Evolution

Volumn 56, Issue 6, 2009, Pages 797-807

  Feres, Juliana Massimino ^a   Guidugli, Marcela Corbo ^a   Mestriner, Moacyr Antonio ^a   Sebbenn, Alexandre Magno ^b   Ciampi, Ana Yamaguishi ^c   Alzate Marin, Ana Lilia ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b Experimental Station Tupi   (Brazil)

^c EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

Author keywords

BG USP RP; Germplasm bank; Hymenaea courbaril; Jatob ; Molecular marker; Tropical tree

Indexed keywords

CONSERVATION GENETICS; DEFORESTATION; ENDANGERED SPECIES; EXTINCTION; GENETIC VARIATION; GERMPLASM; HETEROZYGOSITY; LEGUME; POPULATION SIZE; REPRODUCTIVE STRATEGY;

BRAZIL; SOUTH AMERICA;

FABACEAE; HYMENAEA; HYMENAEA COURBARIL; STILBOCARPA;

EID: 70349985244     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-008-9402-2     Document Type: Article

References (40)

1. Azevedo VCR, Kanashiro M, Ciampi AY, Grattapaglia D (2007) Genetic structure and mating system of Manilkara huberi (Ducke) A.Chev., a heavily logged Amazonian timber species. J Hered 98(7):646-654. doi:10.1093/jhered/esm074.
2. Bawa KS (1974) Breeding systems of tree species of a lowland tropical community. Evolution 28:85-92. doi:10.2307/2407241.
3. Carneiro F, Sebbenn AM, Kanashiro M, Degen B (2007) Low inter-annual variation of mating system and gene flow of Symphonia globulifera in the Brazilian Amazon. Biotropica 39:628-636. doi:10.1111/j.1744-7429.2007.00314.x.
4. Cascante A, Quesada M, Lobo JJ, Fuchs EA (2002) Effects of dry tropical forest fragmentation on the reproductive success and genetic structure of the tree Samanea saman. Conserv Biol 16:137-147. doi:10.1046/j.1523-1739.2002.00317.x.
5. Chase M, Kesseli R, Bawa K (1996) Microsatellite markers for population and conservation genetics of tropical trees. Am J Bot 83:51-57. doi:10.2307/2445953.
6. Ciampi AY, Azevedo VCR, Gaiotto FA, Ramos ACS, Lovato MB (2008) Isolation and characterization of microsatellite loci for Hymenaea courbaril and transferability to Hymenaea stigonocarpa, two tropical timber species. Mol Ecol Res. doi:10.1111/j.1755-0998.2008.02159.x.
7. Cockerham CC (1969) Variance of gene frequencies. Evolution 23:72-84. doi:10.2307/2406485.
8. Cowan RS, Polhill RM (1981) Detarieae. In: Polhill RM, Raven PH (eds) Advances in legume systematics, 1st edn. Royal Botanic Gardens, Kew, UK, pp 117-134.
9. Crestana CSM, Mariano IS (1985) Pollination ecology of Hymenaea stilbocarpa Hayne, the jatobá. Silvicultura 17:31-37.
10. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13-15.
11. Dunphy BK, Hamrick JL, Schwagerl J (2004) A comparison of direct and indirect measures of gene flow in the bat-pollinated tree Hymenaea courbaril in the dry forest life zone of southwestern Puerto Rico. Int J Plant Sci 165:427-436. doi:10.1086/382802.
12. FAO (1984) A Guide to in situ conservation of genetic resources of tropical woody species. Based on the work of L. Roche Durojeanni. Rome (FORGEN/MISC/84/2).
13. Frankel OH, Soulé MS (1981) Conservation and evolution. Cambridge University Press, Cambridge.
14. Fuchs EJ, Lobo JA, Quesada M (2003) Effects of forest fragmentation and flowering phenology on the reproductive success and mating patterns of the tropical dry forest tree Pachira quinata. Conserv Biol 17:149-157. doi:10.1046/j.1523-1739.2003.01140.x.
15. Gibbs PE, Oliveira PE, Bianchi MB (1999) Postzygotic control of selfing in Hymenaea stignocarpa (Leguminosae-Caesalpinioideae) a bat pollinated tree of the Brazilian cerrados. Int J Plant Sci 160:72-78. doi:10.1086/314108.
16. Handley CO Jr, Morrison WM (1991) Foraging behaviour. In: Handley CO Jr, Wilson DE, Gardner AL (eds) Demography and natural history of the common fruit bat, Artebeus jamaicensis, on Barro Colorado Island, Panama. Smithsonian Contributions to Zoology, Washington, pp 137-140.
17. James T, Vege S, Aldrich P, Hamrick JL (1998) Mating systems of three tropical dry forest tree species. Biotropica 30:587-594. doi:10.1111/j.1744-7429.1998.tb00098.x.
18. Jansen DH (1983) Costa rican natural history. University of Chicago Press, Chicago.
19. Kalinowski ST, Taper ML, Marshall TC (2007) Revising how computer program Cervus accommodates genotyping error increase success in paternity assignment. Mol Ecol 16:1099-1106. doi:10.1111/j.1365-294X.2007.03089.x.
20. Kirst M, Cordeiro CM, Rezende GDSP, Grattapaglia D (2005) Power of microsatellite markers for fingerprinting and parentage analysis in Eucalyptus grandis breeding populations. J Hered 96:161-166. doi:10.1093/jhered/esi023.
21. Lacerda AB, Sebbenn AM, Kanashiro M (2008a) Long-pollen movement and deviation of random mating in a low-density continuous population of Hymenaea courbaril in the Brazilian Amazon. Biotropica 40:462-470. doi:10.1111/j.1744-7429.2008.00402.x.
22. Lacerda AB, Kanashiro M, Sebbenn AM (2008b) Effects of reduced impact logging on genetic diversity and spatial genetic structure of a Hymenaea courbaril population in the Brazilian Amazon Forest. For Ecol Manag 255:1034-1043. doi:10.1016/j.foreco.2007.10.009.
23. Lee YT, Langenheim JH (1974) Additional new taxa and new combinations in Hymenaea (Leguminosae, Caesalpinoideae). J Arnold Arbor 55:441-452.
24. Lee YT, Langenheim JH (1975) Sistematics of the genus Hymenaea L. (Leguminosae, Caesalpinioideae, Detarieae), vol 69. University of California Press, Berkeley, pp 1-109.
25. Leite EJ (2007) State-of-knowledge on Hymenaea courbaril L. var. stilbocarpa (Hayne) Lee et Lang. (Leguminosae: Caesalpinoideae) for genetic conservation in Brazil. Res J For 1:1-26. doi:10.1080/17496530701237092.
26. Lewis PO, Zaykin D (2000) GDA-Genetic Data Analysis: version 1.1 for Windows 95/NT. http://www.lewis.eeb.uconn.edu/lewishome/.
27. Lobo JA, Quesada M, Stoner KE (2005) Effects of pollination by bats on the mating system of Ceiba pentandra (Bombacaceae) populations in two tropical life zones in Costa Rica. Am J Bot 92:370-376. doi:10.3732/ajb.92.2.370.
28. Moraes MLT, Kageyama PY, Sebbenn AM (2004) Correlated mating in dioecious tropical tree species, Myracrodruon urundeuva Fr. All. For Genet 11:53-59.
29. Myers N, Mittermeier RA, Mittermeier CG, Fonseca GAB, Kent J (2000) Biodiversity hotspots for conservation priorities. Nature 403:853-858. doi:10.1038/35002501.
30. Nunney L, Campbell KA (1993) Assessing minimum viable population size: demography meets population genetics. Trends Ecol Evol 8:234-239. doi:10.1016/0169-5347(93)90197-W.
31. Reis AMM, Grattapaglia D (2004) RAPD variation in a germplasm collection of Myracrodruon urundeuva (Anacardiaceae), an endangered tropical tree: recommendations for conservation. Genet Resour Crop Evol 51:529-538. doi:10.1023/B:GRES.0000024159.48644.e6.
32. Ritland K (1989) Correlated matings in the partial selfer Mimulus guttatus. Evolution 43:848-859. doi:10.2307/2409312.
33. Ritland K (2002) Extensions of models for the estimation of mating systems using n independent loci. Heredity 88:221-228. doi:10.1038/sj.hdy.6800029.
34. Ritland K(2004) Multilocus mating system program MLTR. Version 3.1. University of British Columbia, Canada. Free program distributed by the authors from http://kritland@.interchange.ubc.ca. Accessed 20 Jan 2007.
35. Rocha O Jr, Aguilar G (2001) Variation in the breeding behavior of the dry forest tree Enterolobium cyclocarpum (Guanacaste) in Costa Rica. Am J Bot 89:1600-1606. doi:10.2307/3558404.
36. Sanguinetti CJ, Dias-Neto E, Simpson AJG (1994) RAPD silver staining and recovery of PCR products separated on polyacrylamide gels. Biotechniques 17:914-921.
37. Tilman D, May RM, Lehman CL, Nowak MA (1994) Habitat destruction and the extinction debt. Nature 371:65-66. doi:10.1038/371065a0.
38. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370. doi:10.2307/2408641.
39. White GM, Powell W (1997) Cross-species amplification of SSR loci in the Meliaceae family. Mol Ecol 6:1195-1197. doi:10.1046/j.1365-294X.1997.00297.x.
40. Zorzetto R, Fioravanti C, Ferroni MA (2003) Floresta renasce. Pesquisa Fapesp 91:48-52.