Genetic structure and mating system of Manilkara huberi (Ducke) A. Chev., a heavily logged Amazonian timber species

Journal of Heredity

Volumn 98, Issue 7, 2007, Pages 646-654

  Azevedo, Vânia C R ^a,b   Kanashiro, Milton ^c   Ciampi, Ana Y ^a   Grattapaglia, Dario ^a  

^a EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA   (Brazil)

^b UNIVERSITY OF BRASILIA   (Brazil)

^c EMBRAPA AMAZÔNIA ORIENTAL   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BRAZIL; ENDANGERED SPECIES; GENE LOCUS; GENE STRUCTURE; GENETIC VARIABILITY; INBREEDING; MANILKARA HUBERI; MATING SYSTEM; MICROSATELLITE MARKER; NONHUMAN; POLLEN; POPULATION GENETICS; POPULATION SIZE; PRIORITY JOURNAL; SEEDLING; SPECIES CONSERVATION; TREE; WOOD;

MANILKARA HUBERI;

EID: 37549022935     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esm074     Document Type: Article

References (52)

1. Austerlitz F, Smouse PE. 2001. Two-generation analysis of pollen flow across a landscape. II. Relation between pollen dispersal and inter-female distance. Genetics. 157:851-857.
2. Azevedo VCR, Vinson CC, Ciampi AY. 2005. Twelve microsatellite loci in Manilkara huberi (Ducke) Standl (Sapotaceae), an Amazonian timber species. Mol Ecol Notes. 5:13-15.
3. Boshier DH. 1995. Genetic diversity and spatial structure within a natural stand of a tropical forest tree species, Carapa procera (Meliaceae) in French Guiana. Heredity. 9:72-82.
4. Bottin L, Verhaegen D, Tassin J, Olivieri I, Vaillant A, Bouvet JM. 2005. Genetic diversity and population structure of an insular tree, Santalun austrocaledonicum in New Caledonian. Mol Ecol. 14:1979-1989.
5. Brondani RPV, Gattrapaglia D. 2001. Cost-effective method to synthesize a fluorescent internal DNA standard for automated fragment sizing. Biotechniques. 4(31):2-5.
6. Cardoso SRS, Eloy NB, Provan J, Cardoso MA, Ferreira PCG. 2000. Genetic differentiation of Euterpe edulis Mart. populations estimated by AFLP analysis. Mol Ecol. 9:1753-1760.
7. Ciampi AY, Brondani RPV, Grattapaglia D. 2000. Desenvolvimento de Marcadores Microssatélites para Copaifera Langsdorffii Desf. (Copaíba)-Leguminosae-Caesalpinioideae e Otimização de Sistemas Fluorescentes de Genotipagem Multiloco. Boletim de Pesquisa. Vol. 16. Brasília (Distrito Federal): Embrapa Cenargen.
8. Cloutier D, Kanbashiro M, Ciampi AY, Schoen DJ. 2007. Impact of selective logging on inbreeding and gene dispersal in an Amazonian tree population of Carapa guianensis Aubl. Mol Ecol. 16:797-809.
9. Cockerham CC. 1969. Variance of gene frequencies. Evolution. 23:72-84.
10. Collevatti RG, Grattapaglia D, Hay JD. 2001. High resolution microsatellite based analysis of the mating system allows the detection of significant biparental inbreeding in Caryocar brasiliensis, and endangered tropical tree species. Heredity. 86:60-67.
11. Dayanandan S, Dole J, Bawa J, Kesseli R. 1999. Population structure delineated with microsatellite markers in fragmented populations of a tropical tree, Carapa guianensis (Meliaceae). Mol Ecol. 8:1585-1592.
12. Dendrogene. Maçaranduba/Manilkara huberi/. Belém PA: Embrapa Amazônia Oriental: Projeto Dendrogene 2004. (Projeto Dendrogene. Espécies Arbóreas da Amazônia, 4).
13. Degen B. 2003. Spatial genetic software (SGS), version 1.0d. [Internet]. [Updated 2006 May]. Available from: http://software.bfh-inst2.de/download3.html.
14. Degen B, Petit R, Kremer A. 2001. SGS - spatial genetic software: a computer program for analysis of spatial genetic and phenotypic structures of individuals and populations. J Hered. 92(5):447-449.
15. Dick CW. 2001. Genetic rescue of remnant tropical trees by an alien pollinator. Proc R Soc Lond Ser Biol Sci. 268:2391-2396.
16. Dick CW, Etchelecu G, Austerlitz F. 2003. Pollen dispersal of Neotropical trees (Dinizia excelsa: Fabaceae) by native insects and Africa honeybees in pristine and fragmented Amazonian rainforest. Mol Ecol. 12:753-764.
17. Diniz-Filho JAF, Telles MPC. 2001. Spatial autocorrelation analysis and the identification of operational units for conservation in continuous populations. Conserv Biol. 16(4):924-935.
18. Doyle JJ, Doyle JL. 1987. Isolation of plant DNA from fresh tissue. Focus. 12:13-15.
19. Dyer RJ, Sork VL. 2001. Pollen pool heterogeneity in shortleaf pine, Pinus echinata Mill. Mol Ecol. 10:859-866.
20. Excoffier L, Smouse PE, Quattro JW. 1992. Analysis of molecular variance inferred from metric distance among DNA haplotypes: applications to human mitochondrial DNA restriction data. Genetics. 131:479-491.
21. Ferraz IDK, Leal-Filho N, Imakawa AM, Varela VP, Pina-Rodrigues FCM. 2004. Características básicas para um agrupamento ecológico preliminar de espécies madeireiras da floresta de terra firme da Amazônia Central. Acta Amazônica. 34(4):621-633.
22. Hamrick JL. 1993. Influence of seed dispersal mechanisms on the genetic structure of tropical tree populations. Vegetatio. 107/108: 281-297.
23. Hardy OJ, Maggia L, Bandou E, Breyne P, Caron H, Chevallier MH, Doligez A, Dutech C, Kremer A, Latouche-Hallé C, et al. 2006. Fine-scale genetic structure and gene dispersal inferences in 10 neotropical tree species. Mol Ecol. 15:559-571.
24. Hardy OJ, Vekemans X. 2002. SPAGeDi: a versatile computer program to analyze spatial genetic structure at the individual or population levels. Mol Ecol Notes. 2:618-620.
25. Irwin AL, Hamrick JL, Godt MJW, Smouse PE. 2003. A multiyear estimate of the effective pollen donor pool for Albizia julibrissin. Heredity. 90:187-194.
26. Kanashiro M, Thompson IS, Yared JAG, Loveless MD, Conventry P, Martins-da-Silva RCV, Degen B, Amaral W. 2001. Improving conservation values of managed forests: The Dendrogene Project in the Brazilian Amazon. Unasylva. 209(53):25-33.
27. Lemes MR, Gribel R, Proctor J, Grattapaglia D. 2003. Population genetic structure of mahogany (Swietenia macrophylla king, meliaceae) across the Brazilian Amazon, based on variation at macrosatellite loci: implications for conservation. Mol Ecol. 12:2875-2883.
28. Lewis PO, Zaykin D. 2001. Genetic data analysis: computer program for the analysis of allelic data. Version 1.0 (d16c). [Internet]. [cited 2004-2006]. Available from: http://hydrodictyon.eeb.uconn.edu/people/plewis/software.php.
29. Loiselle BA, Sork VL, Nason J, Graham C. 1995. Spatial genetic structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). Am J Bot. 82(11):1420-1425.
30. Machado FRB, Vinson CC, Silva VP, Ciampi AY. 2002. Extração de DNA genômico de câmbios de espécies madeireiras tropicais. In: Recife PE, editor. 53° Congresso Nacional de Botânica. 2002 July, 22 a 26. Sociedade Brasileira de Botânica. Recife, Pernanbuco, Brazil.
31. Martins K, Chaves LJ, Buso GSC, Kageyama P. 2006. Mating system and fine-scale spatial genetic structure of Solanum lycocarpum St. Hil. (Solanaceae) in the Brazilian Cerrado: Conserv Genet. doi: 10.1007/s10592-006- 9140-y.
32. Matos DMS, Watkinson AR. 1999. The fecundity, seed, seedling ecology of edible palm Euterpe edulis in southeastern Brazil. Biotropica. 30(4):595-603.
33. Missiaggia AA, Grattapaglia D. 2006. A method for microsatellite genotyping with 4-color fluorescent detection using multiple tailed primers. Genet Mol Res. 5:72-78.
34. Murawski DA. 1995. Reproductive biology and genetics of tropical trees from canopy perspectives. In: Lowman MD, Nadkarni NM, editors. Forest Canopies. New York: Academic Press. p. 457-493.
35. NASA. 2001. U.S. Geological Survey, data: 30/07/2001. Landsat ETM+, WRS-2, 227/062, Composição RGB - 4-5-3, Nivel 1G. Sioux Falls (South Dakota): USGS.
36. Nason JD, Hamrick JL. 1997. Reproductive and genetic consequences of forest fragmentation: two case studies of neotropical canopy trees. J Hered. 88:264-276.
37. Novick RR, Dick CW, Lemes MR, Navarro C, Caccone A, Bermingham E. 2003. Genetic structure of Mesoamerican populations of big-leaf mahogany (Swietenia macrophylla) inferred from microsatellite analysis. Mol Ecol. 12:2885-2889.
38. Reis MS, Guerra MP, Nodari RO. 1997. Management of natural populations and maintenance of genetic diversity of Euterpe edulis, the heart-of-palm tree. In: Bruns S, Mantell S, Tragardh C, Viana AM, editors. Recent Advances in Biotechnology for Tree Conservation and Management. Stockholm (Sweden): International Foundation for Science. p. 145-156.
39. Ritland K. 1989. Correlated matings in the partial selfer Mimulus guttatus. Evolution. 43:848-859.
40. Ritland K. 2002. Multilocus mating system program MLTR. Version 3.0. Canada: University of British Columbia, Vancouver, BC. [Internet]. [Updated 2004 August]. Available from: http://genetics.forestry.ubc.ca/ritland/programs.html.
41. Ritland K, Jain S. 1981. A model for the estimation of outcrossing rate and gene frequencies using independent loci. Heredity. 47:35-52.
42. Sampson JF. 1998. Multiple parternity in Eucalyptus rameliana (Myrytaceae). Heredity. 81:349-355.
43. Sebbenn AM. 2003. Tamanho efetivo para conservação ex situ de espécies arbóreas com sistema misto de reprodução. Revista Instituto Florestal. São Paulo. 15:147-162.
44. Sebbenn AM, Seoane CES, Kageyama PY, Vencovsky R. 2000. Efeitos do manejo na estrutura genética de populações de caixeta (Tabebuia cassinoides). Sci Florestalis. 58:127-143.
45. Silva MB. 2005. Aspectos ecológicos e genéticos de Bagassa guianensis Aubl. (Moraceae): um enfoque para o manejo florestal sustentado da espécie [PhD thesis]. Belém: UFP. 165.
46. Smouse PE, Dyer RJ, Westfall RD, Sork VL. 2001. Two-generation analysis of pollen flow across a landscape. I. Male gamete heterogeneity among females. Evolution. 55:260-271.
47. Sokal RR, Jacquez GM. 1991. Testing inferences about micro-evolutionary processes by means of spatial autocorrelation analysis. Evolution. 45: 152-168.
48. Sokal RR, Oden NL. 1978. Spatial autocorrelation in biology. A methodology. Biol J Linn Soc. 10:199-228.
49. Veríssimo A, Uhl C, Mattos M, Brandino S, Vieira I. 1996. Impactos sociais, econômicos e ecológicos da exploração seletiva de madeiras numa região de fronteira na Amazônia Oriental: o caso de Tailândia. In: Barros AC, editor. A expansão da atividade madeireira na Amazônia: impactos e perspectivas para o desenvolvimento do setor florestal no Pará. Belém (PA): IMAZON. p. 9-46.
50. Vinson CC. 2004. Isolamento de Microssatélites de Espécies Madeireiras no Contexto da Sustentabilidade Genética no Manejo Florestal [masters dissertation]. Belém: UFPA.
51. White G, Powell W. 1997. Cross-species amplification of SSR loci in the Meliceae family. Mol Ecol. 6:1995-1997.
52. Young A, Boyle T, Brown T. 1996. The population genetic consequences of habitat fragmentation for plants. Trends Ecol Evol. 11:413-418.