Colorimetric sensing by using allosteric-DNAzyme-coupled rolling circle amplification and a peptide nucleic acid-organic dye probe

Angewandte Chemie - International Edition

Volumn 48, Issue 19, 2009, Pages 3512-3515

  Monsur Ali, M ^a   Li, Yingfu ^a  

^a MCMASTER UNIVERSITY   (Canada)

Author keywords

Biosensors; Colorimetry; Dnazymes; Peptide nucleic acids; Rolling circle amplification

Indexed keywords

COLORIMETRIC SENSING; DNAZYME; DNAZYMES; LIGAND BINDING; NAKED-EYE; ORGANIC DYE; PEPTIDE NUCLEIC ACID; PEPTIDE NUCLEIC ACIDS; ROLLING CIRCLE AMPLIFICATION; ROLLING CIRCLE AMPLIFICATIONS; SINGLE-STRANDED DNA MOLECULES; TARGET DETECTION;

AMINES; BIOMOLECULES; BIOSENSORS; COLOR; COLORIMETERS; COLORIMETRY; DNA; GENES; NUCLEIC ACIDS; PEPTIDES; RNA;

AMPLIFICATION;

COLORING AGENT; DEOXYRIBOZYME; PEPTIDE NUCLEIC ACID; SINGLE STRANDED DNA;

ALLOSTERISM; BIOSYNTHESIS; CHEMISTRY; COLORIMETRY; DNA REPLICATION; GENETIC PROCEDURES; METABOLISM; NUCLEIC ACID HYBRIDIZATION; PROCEDURES;

ALLOSTERIC REGULATION; BIOSENSING TECHNIQUES; COLORIMETRY; COLORING AGENTS; DNA REPLICATION; DNA, CATALYTIC; DNA, SINGLE-STRANDED; NUCLEIC ACID HYBRIDIZATION; PEPTIDE NUCLEIC ACIDS;

EID: 70349974766     PISSN: 14337851     EISSN: None     Source Type: Journal    
DOI: 10.1002/anie.200805966     Document Type: Article

References (44)

1. (a) N. K. Navani, Y. Li, Curr. Opin. Chem. Biol. 2006, 10, 272-281
2. (b) J. F. Lee, G. M. Stovall, A. D. Ellington, Curr. Opin. Chem. Biol. 2006,10, 282-289.
3. (a) A. D. Ellington, J. W. Szostak, Nature 1990, 346, 818-822
4. (b) C. Tuerk, L. Gold, Science 1990, 249, 505-510.
5. (a) M. Famulok, G. Mayer, M. Blind, Acc. Chem. Res. 2000, 33,591-599
6. (b) D. S. Wilson, J. W. Szostak, Annu. Rev. Biochem. 1999, 68, 611-647
7. D. Shangguan, Y. Li, Z. Tang, Z. C. Cao, H. W. Chen, P. Mallikaratchy, K. Sefah, C. J. Yang, W. Tan, Proc. Natl. Acad. Sci. USA 2006,103, 11838-11843.
8. (a) J. C. Achenbach, W. Chiuman, R. P. Cruz, Y. Li, Curr. Pharm. Biotechnol. 2004, 5, 321-336
9. (b) S. K. Silverman, Nucleic Acids Res. 2005, 33, 6151-6163.
10. (a) G. A. Soukup, R. R. Breaker, Proc. Natl. Acad. Sci. USA 1999, 96, 3584-3589
11. (b) R. R. Breaker, Curr. Opin. Biotechnol. 2002,13, 31-39.
12. (a)M. Levy, A. D. Ellington, Chem. Biol. 2002, 9, 417-426
13. (b) S. H. Mei, Z. Liu, J. D. Brennan, Y. Li, J. Am. Chem. Soc. 2003, 125, 412-420
14. J. C. Achenbach, R. Nutiu, Y. Li, Anal. Chim. Acta 2005, 534, 41-51
15. Y. Shen, W. Chiuman, J. D. Brennan, Y. Li, ChemBioChem 2006, 7, 1343-1348
16. (e) W. Chiuman, Y. Li, PLoS One 2007, 2, e1224.
17. (a) A. Fire, S. Xu, Proc. Natl. Acad. Sci. USA 1995, 92, 4641-4645
18. (b) D. Liu, S. L. Daubendiek, M. A. Zillman, K. Ryan, E. T. Kool, J. Am. Chem. Soc. 1996,118, 1587-1594.
19. (a) P. M. Lizardi, X. Huang, Z. Zhu, P. Bray-Ward, D. C. Thomas, D. C. Ward, Nat. Genet. 1998, 19, 225-232
20. (b) C. Larsson, J. Koch, A. Nygren, G. Janssen, A. K. Raap, U. Landegren, M. Nilsson, Nat. Methods 2004, 1, 227-232.
21. (a) D. A. Di Giusto, W. A. Wlassoff, J. J. Gooding, B. A. Messerle, G. C. King, Nucleic Acids Res. 2005, 33, e64
22. (b) L. Yang, C. W. Fung, E. J. Cho, A. D. Ellington, Anal. Chem. 2007, 79,3320-3329)
23. L. Zhou, L.-J. Ou, X. Chu, G.-L. Shen, R.-Q. Yu, Anal. Chem. 2007, 79, 7492-7500
24. E. J. Cho, L. Yang, M. Levy, A. D. Ellington, J. Am. Chem. Soc. 2005,127, 2022-2023
25. (e) Z. Cheglakov, Y. Weizmann, B. Basnar, I. Willner, Org. Biomol. Chem. 2007, 5, 223-225
26. (f) Y. Tian, Y. He, C. Mao, ChemBioChem 2006, 7, 1862-1864
27. (g) W. Zhao, M. M. Ali, M. A. Brook, Y. Li, Angew. Chem. 2008, 120, 6428-6436 Angew. Chem. Int. Ed. 2008, 47, 6330-6337.
28. (a) M. Egholm, O. Buchardt, L. Christensen, C. Behrens, S. M. Freier, D. A. Driver, R. H. Berg, S. K. Kim, B. Norden, P. E. Nielsen, Nature 1993, 365, 566-568
29. (b) O. Buchardt, M. Egholm, R. H. Berg, P. E. Nielsen, Trends Biotechnol. 1993, 11, 384-386.
30. (a) S. A. Kushon, J. P. Jordan, J. L. Seifert, H. Nielsen, P. E. Nielsen, B. A. Armitage, J. Am. Chem. Soc. 2001, 123, 10805-10813
31. (b) M. Komiyama, S. Ye, X. Liang, Y. Yamamoto, T. Tomita, J.-M. Zhou, H. Aburatani, J. Am. Chem. Soc. 2003, 125, 3758-3762
32. I. Dilek, M. Madrid, R. Singh, C. P. Urrea, B. A. Armitage, J. Am. Chem. Soc. 2005, 127, 3339-3345
33. L. M. Wilhelmsson, B. Norden, K. Mukherjee, M. T. Dulay, R. N. Zare, Nucleic Acids Res. 2002, 30, e3.
34. L. P. Billen, Y. Li, Bioorg. Chem. 2004, 32, 582-598.
35. (a) W. Zhao, Y. Gao, S. A. Kandadai, M. A. Brook, Y. Li, Angew. Chem. 2006, 118, 2469-2473; Angew. Chem. Int. Ed. 2006, 45, 2409-2413
36. (b) W. Zhao, Y. Gao, M. A. Brook, Y. Li, Chem. Commun. 2006, 3582-3584
37. M. M. Ali, S. Su, C. D. Filipe, R. Pelton, Y. Li, Chem. Commun. 2007, 4459-4461.
38. (a) Z. Liu, S. H. Mei, J. D. Brennan, Y. Li, J. Am. Chem. Soc. 2003, 125, 7539-7545
39. (b) Y. Shen, J. D. Brennan, Y. Li, Biochemistry 2005, 44, 12066-12076.
40. (a) D. E. Huizenga, J. W. Szostak, Biochemistry 1995, 34, 656-665
41. (b) R. Nutiu, Y. Li, Angew. Chem. 2005, 117, 1085-1089;Angew. Chem. Int. Ed. 2005, 44, 1061-1065.
42. S. A. Kandadai, W. Chiuman, Y. Li, Chem. Commun. 2006, 2359-2361.
43. A. Reichert, J. O. Nagy, W. Spevak, D. Charych, J. Am. Chem. Soc. 1995, 117, 829-830.
44. T. Tedeschi, S. Sforza, S. Ye, R. Corradini, A. Dossena, M. Komiyama, R. Marchelli, J. Biochem. Biophys. Methods 2007, 70, 735-741.