-
1
-
-
0345333119
-
Unique type of plasmid maintenance function: postsegregational killing of plasmid-free cells
-
Gerdes K., Rasmussen P.B., and Molin S. Unique type of plasmid maintenance function: postsegregational killing of plasmid-free cells. Proc. Natl Acad. Sci. USA 83 (1986) 3116-3120
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, pp. 3116-3120
-
-
Gerdes, K.1
Rasmussen, P.B.2
Molin, S.3
-
2
-
-
0020804285
-
Mini-F plasmid genes that couple host cell division to plasmid proliferation
-
Ogura T., and Hiraga S. Mini-F plasmid genes that couple host cell division to plasmid proliferation. Proc. Natl Acad. Sci. USA 80 (1983) 4784-4788
-
(1983)
Proc. Natl Acad. Sci. USA
, vol.80
, pp. 4784-4788
-
-
Ogura, T.1
Hiraga, S.2
-
3
-
-
0027522090
-
chpA and chpB, Escherichia coli chromosomal homologs of the pem locus responsible for stable maintenance of plasmid R100
-
Masuda Y., Miyakawa K., Nishimura Y., and Ohtsubo E. chpA and chpB, Escherichia coli chromosomal homologs of the pem locus responsible for stable maintenance of plasmid R100. J. Bacteriol. 175 (1993) 6850-6856
-
(1993)
J. Bacteriol.
, vol.175
, pp. 6850-6856
-
-
Masuda, Y.1
Miyakawa, K.2
Nishimura, Y.3
Ohtsubo, E.4
-
4
-
-
67651103123
-
Bacterial toxin-antitoxin systems as targets for the development of novel antibiotics
-
Bonomo R.A., and Tolmasky M.E. (Eds), ASM Press, Washington, DC
-
Alonso J.C., Balsa D., Cherny I., Christensen S.K., Francuski D., Gazit E., et al. Bacterial toxin-antitoxin systems as targets for the development of novel antibiotics. In: Bonomo R.A., and Tolmasky M.E. (Eds). Enzyme-Mediated Resistance to Antibiotics: Mechanism, Dissemination, and Prospects for Inhibition (2007), ASM Press, Washington, DC 313-329
-
(2007)
Enzyme-Mediated Resistance to Antibiotics: Mechanism, Dissemination, and Prospects for Inhibition
, pp. 313-329
-
-
Alonso, J.C.1
Balsa, D.2
Cherny, I.3
Christensen, S.K.4
Francuski, D.5
Gazit, E.6
-
6
-
-
1542472730
-
New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system
-
Anantharaman V., and Aravind L. New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system. Genome Biol. 4 (2003) R81
-
(2003)
Genome Biol.
, vol.4
-
-
Anantharaman, V.1
Aravind, L.2
-
7
-
-
38949195105
-
Messenger RNA regulation: to translate or to degrade
-
Shyu A., Wilkinson M.F., and van Hoof A. Messenger RNA regulation: to translate or to degrade. EMBO J. 27 (2008) 471-481
-
(2008)
EMBO J.
, vol.27
, pp. 471-481
-
-
Shyu, A.1
Wilkinson, M.F.2
van Hoof, A.3
-
8
-
-
33744462622
-
Crystallization of the C-terminal domain of the addiction antidote CcdA in complex with its toxin CcdB
-
Buts L., De Jonge N., Loris R., Wyns L., and Dao-Thi M. Crystallization of the C-terminal domain of the addiction antidote CcdA in complex with its toxin CcdB. Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Commun. 61 (2005) 949-952
-
(2005)
Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Commun.
, vol.61
, pp. 949-952
-
-
Buts, L.1
De Jonge, N.2
Loris, R.3
Wyns, L.4
Dao-Thi, M.5
-
9
-
-
33846967840
-
Structure and function of bacterial kid-kis and related toxin-antitoxin systems
-
Kamphuis M.B., Monti M.C., van den Heuvel R.H.H., López-Villarejo J., Díaz-Orejas R., and Boelens R. Structure and function of bacterial kid-kis and related toxin-antitoxin systems. Protein Pept. Lett. 14 (2007) 113-124
-
(2007)
Protein Pept. Lett.
, vol.14
, pp. 113-124
-
-
Kamphuis, M.B.1
Monti, M.C.2
van den Heuvel, R.H.H.3
López-Villarejo, J.4
Díaz-Orejas, R.5
Boelens, R.6
-
10
-
-
0037738520
-
Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition
-
Kamada K., Hanaoka F., and Burley S.K. Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition. Mol. Cell 11 (2003) 875-884
-
(2003)
Mol. Cell
, vol.11
, pp. 875-884
-
-
Kamada, K.1
Hanaoka, F.2
Burley, S.K.3
-
11
-
-
18744409067
-
Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects
-
Takagi H., Kakuta Y., Okada T., Yao M., Tanaka I., and Kimura M. Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects. Nat. Struct. Mol. Biol. 12 (2005) 327-331
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 327-331
-
-
Takagi, H.1
Kakuta, Y.2
Okada, T.3
Yao, M.4
Tanaka, I.5
Kimura, M.6
-
12
-
-
23744463273
-
Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin
-
Kamada K., and Hanaoka F. Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin. Mol. Cell 19 (2005) 497-509
-
(2005)
Mol. Cell
, vol.19
, pp. 497-509
-
-
Kamada, K.1
Hanaoka, F.2
-
13
-
-
60649093164
-
Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage
-
Prysak M.H., Mozdzierz C.J., Cook A.M., Zhu L., Zhang Y., Inouye M., and Woychik N.A. Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage. Mol. Microbiol. 71 (2009) 1071-1087
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 1071-1087
-
-
Prysak, M.H.1
Mozdzierz, C.J.2
Cook, A.M.3
Zhu, L.4
Zhang, Y.5
Inouye, M.6
Woychik, N.A.7
-
14
-
-
34548445072
-
prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli
-
Schmidt O., Schuenemann V.J., Hand N.J., Silhavy T.J., Martin J., Lupas A.N., and Djuranovic S. prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli. J. Mol. Biol. 372 (2007) 894-905
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 894-905
-
-
Schmidt, O.1
Schuenemann, V.J.2
Hand, N.J.3
Silhavy, T.J.4
Martin, J.5
Lupas, A.N.6
Djuranovic, S.7
-
15
-
-
44449119912
-
Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit
-
Liu M., Zhang Y., Inouye M., and Woychik N.A. Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit. Proc. Natl Acad. Sci. USA 105 (2008) 5885-5890
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 5885-5890
-
-
Liu, M.1
Zhang, Y.2
Inouye, M.3
Woychik, N.A.4
-
16
-
-
0033546274
-
The Doc toxin and Phd antidote proteins of the bacteriophage P1 plasmid addiction system form a heterotrimeric complex
-
Gazit E., and Sauer R.T. The Doc toxin and Phd antidote proteins of the bacteriophage P1 plasmid addiction system form a heterotrimeric complex. J. Biol. Chem. 274 (1999) 16813-16818
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 16813-16818
-
-
Gazit, E.1
Sauer, R.T.2
-
17
-
-
58649099643
-
Structure and proposed activity of a member of the VapBC family of toxin-antitoxin systems. VapBC-5 from Mycobacterium tuberculosis
-
Miallau L., Faller M., Chiang J., Arbing M., Guo F., Cascio D., and Eisenberg D. Structure and proposed activity of a member of the VapBC family of toxin-antitoxin systems. VapBC-5 from Mycobacterium tuberculosis. J. Biol. Chem. 284 (2009) 276-283
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 276-283
-
-
Miallau, L.1
Faller, M.2
Chiang, J.3
Arbing, M.4
Guo, F.5
Cascio, D.6
Eisenberg, D.7
-
18
-
-
58449087611
-
Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB
-
Schumacher M.A., Piro K.M., Xu W., Hansen S., Lewis K., and Brennan R.G. Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB. Science 323 (2009) 396-401
-
(2009)
Science
, vol.323
, pp. 396-401
-
-
Schumacher, M.A.1
Piro, K.M.2
Xu, W.3
Hansen, S.4
Lewis, K.5
Brennan, R.G.6
-
19
-
-
0037452810
-
Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation
-
Meinhart A., Alonso J.C., Sträter N., and Saenger W. Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc. Natl Acad. Sci. USA 100 (2003) 1661-1666
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 1661-1666
-
-
Meinhart, A.1
Alonso, J.C.2
Sträter, N.3
Saenger, W.4
-
20
-
-
39149110856
-
RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes
-
Sevin E.W., and Barloy-Hubler F. RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes. Genome Biol. 8 (2007) R155
-
(2007)
Genome Biol.
, vol.8
-
-
Sevin, E.W.1
Barloy-Hubler, F.2
-
21
-
-
2342447390
-
Structural inhibition of the colicin D tRNase by the tRNA-mimicking immunity protein
-
Graille M., Mora L., Buckingham R.H., van Tilbeurgh H., and de Zamaroczy M. Structural inhibition of the colicin D tRNase by the tRNA-mimicking immunity protein. EMBO J. 23 (2004) 1474-1482
-
(2004)
EMBO J.
, vol.23
, pp. 1474-1482
-
-
Graille, M.1
Mora, L.2
Buckingham, R.H.3
van Tilbeurgh, H.4
de Zamaroczy, M.5
-
22
-
-
23244431996
-
Structural and mutational studies of the catalytic domain of colicin E5: a tRNA-specific ribonuclease
-
Lin Y., Elias Y., and Huang R.H. Structural and mutational studies of the catalytic domain of colicin E5: a tRNA-specific ribonuclease. Biochemistry 44 (2005) 10494-10500
-
(2005)
Biochemistry
, vol.44
, pp. 10494-10500
-
-
Lin, Y.1
Elias, Y.2
Huang, R.H.3
-
23
-
-
0024162978
-
A nuclease that cuts specifically in the ribosome binding site of some T4 mRNAs
-
Uzan M., Favre R., and Brody E. A nuclease that cuts specifically in the ribosome binding site of some T4 mRNAs. Proc. Natl Acad. Sci. USA 85 (1988) 8895-8899
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 8895-8899
-
-
Uzan, M.1
Favre, R.2
Brody, E.3
-
24
-
-
0035807805
-
RelE, a global inhibitor of translation, is activated during nutritional stress
-
Christensen S.K., Mikkelsen M., Pedersen K., and Gerdes K. RelE, a global inhibitor of translation, is activated during nutritional stress. Proc. Natl Acad. Sci. USA 98 (2001) 14328-14333
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 14328-14333
-
-
Christensen, S.K.1
Mikkelsen, M.2
Pedersen, K.3
Gerdes, K.4
-
25
-
-
0037428226
-
The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site
-
Pedersen K., Zavialov A.V., Pavlov M.Y., Elf J., Gerdes K., and Ehrenberg M. The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site. Cell 112 (2003) 131-140
-
(2003)
Cell
, vol.112
, pp. 131-140
-
-
Pedersen, K.1
Zavialov, A.V.2
Pavlov, M.Y.3
Elf, J.4
Gerdes, K.5
Ehrenberg, M.6
-
26
-
-
0038797797
-
RelE toxins from bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA
-
Christensen S.K., and Gerdes K. RelE toxins from bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA. Mol. Microbiol. 48 (2003) 1389-1400
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 1389-1400
-
-
Christensen, S.K.1
Gerdes, K.2
-
27
-
-
47749089764
-
Messenger RNA interferase RelE controls relBE transcription by conditional cooperativity
-
Overgaard M., Borch J., Jørgensen M.G., and Gerdes K. Messenger RNA interferase RelE controls relBE transcription by conditional cooperativity. Mol. Microbiol. 69 (2008) 841-857
-
(2008)
Mol. Microbiol.
, vol.69
, pp. 841-857
-
-
Overgaard, M.1
Borch, J.2
Jørgensen, M.G.3
Gerdes, K.4
-
28
-
-
44649143795
-
Structural mechanism of transcriptional autorepression of the Escherichia coli RelB/RelE antitoxin/toxin module
-
Li G., Zhang Y., Inouye M., and Ikura M. Structural mechanism of transcriptional autorepression of the Escherichia coli RelB/RelE antitoxin/toxin module. J. Mol. Biol. 380 (2008) 107-119
-
(2008)
J. Mol. Biol.
, vol.380
, pp. 107-119
-
-
Li, G.1
Zhang, Y.2
Inouye, M.3
Ikura, M.4
-
29
-
-
33846680128
-
Toxin-antitoxin regulation: bimodal interaction of YefM-YoeB with paired DNA palindromes exerts transcriptional autorepression
-
Kedzierska B., Lian L., and Hayes F. Toxin-antitoxin regulation: bimodal interaction of YefM-YoeB with paired DNA palindromes exerts transcriptional autorepression. Nucleic Acids Res. 35 (2007) 325-339
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 325-339
-
-
Kedzierska, B.1
Lian, L.2
Hayes, F.3
-
30
-
-
0028006860
-
Positive-selection vectors using the F plasmid ccdB killer gene
-
Bernard P., Gabant P., Bahassi E.M., and Couturier M. Positive-selection vectors using the F plasmid ccdB killer gene. Gene 148 (1994) 71-74
-
(1994)
Gene
, vol.148
, pp. 71-74
-
-
Bernard, P.1
Gabant, P.2
Bahassi, E.M.3
Couturier, M.4
-
31
-
-
38649111610
-
The bacterial toxin RelE induces specific mRNA cleavage in the A site of the eukaryote ribosome
-
Andreev D., Hauryliuk V., Terenin I., Dmitriev S., Ehrenberg M., and Shatsky I. The bacterial toxin RelE induces specific mRNA cleavage in the A site of the eukaryote ribosome. RNA 14 (2008) 233-239
-
(2008)
RNA
, vol.14
, pp. 233-239
-
-
Andreev, D.1
Hauryliuk, V.2
Terenin, I.3
Dmitriev, S.4
Ehrenberg, M.5
Shatsky, I.6
-
32
-
-
0037314068
-
TopDraw: a sketchpad for protein structure topology cartoons
-
Bond C.S. TopDraw: a sketchpad for protein structure topology cartoons. Bioinformatics 19 (2003) 311-312
-
(2003)
Bioinformatics
, vol.19
, pp. 311-312
-
-
Bond, C.S.1
-
33
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel E., and Henrick K. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372 (2007) 774-797
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
34
-
-
34547571027
-
The M-Coffee Web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods
-
Moretti S., Armougom F., Wallace I.M., Higgins D.G., Jongeneel C.V., and Notredame C. The M-Coffee Web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res. 35 (2007) W645-W648
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Moretti, S.1
Armougom, F.2
Wallace, I.M.3
Higgins, D.G.4
Jongeneel, C.V.5
Notredame, C.6
-
35
-
-
0032961270
-
ESPript: analysis of multiple sequence alignments in PostScript
-
Gouet P., Courcelle E., Stuart D.I., and Métoz F. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15 (1999) 305-308
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Métoz, F.4
-
36
-
-
0034479757
-
TOP: a new method for protein structure comparisons and similarity searches
-
Lu G. TOP: a new method for protein structure comparisons and similarity searches. J. Appl. Crystallogr. 33 (2000) 176-183
-
(2000)
J. Appl. Crystallogr.
, vol.33
, pp. 176-183
-
-
Lu, G.1
-
37
-
-
33846976719
-
RNA recognition and cleavage by sequence-specific endoribonucleases
-
Saïda F., and Odaert B. RNA recognition and cleavage by sequence-specific endoribonucleases. Protein Pept. Lett. 14 (2007) 103-111
-
(2007)
Protein Pept. Lett.
, vol.14
, pp. 103-111
-
-
Saïda, F.1
Odaert, B.2
-
38
-
-
0035918247
-
Role of the substrate conformation and of the S1 protein in the cleavage efficiency of the T4 endoribonuclease RegB
-
Lebars I., Hu R.M., Lallemand J.Y., Uzan M., and Bontems F. Role of the substrate conformation and of the S1 protein in the cleavage efficiency of the T4 endoribonuclease RegB. J. Biol. Chem. 276 (2001) 13264-13272
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 13264-13272
-
-
Lebars, I.1
Hu, R.M.2
Lallemand, J.Y.3
Uzan, M.4
Bontems, F.5
-
39
-
-
0027190754
-
Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network
-
Andrade M., Chacon P., Merelo J., and Moran F. Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network. Protein Eng. 6 (1993) 383-390
-
(1993)
Protein Eng.
, vol.6
, pp. 383-390
-
-
Andrade, M.1
Chacon, P.2
Merelo, J.3
Moran, F.4
-
40
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
42
-
-
0037237545
-
Automated main-chain model building by template matching and iterative fragment extension
-
Terwilliger T.C. Automated main-chain model building by template matching and iterative fragment extension. Acta Crystallogr., Sect. D: Biol. Crystallogr. 59 (2003) 38-44
-
(2003)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.59
, pp. 38-44
-
-
Terwilliger, T.C.1
-
45
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
Collaborative Computational Project, No. 4
-
Collaborative Computational Project, No. 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr., Sect. D: Bio. Crystallogr. 50 (1994) 760-763
-
(1994)
Acta Crystallogr., Sect. D: Bio. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
46
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr., Sect. D: Biol. Crystallogr. 54 (1998) 905-921
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
|