Mitochondrial DNA recombination in Brassica campestris

Plant Science

Volumn 177, Issue 6, 2009, Pages 629-635

  Manchekar, Medha ^a   Scissum Gunn, Karyn D ^a   Hammett, Lisa A ^a   Backert, Steffen ^a   Nielsen, Brent L ^a,b  

^a AUBURN UNIVERSITY   (United States)

^b BRIGHAM YOUNG UNIVERSITY   (United States)

Author keywords

Brassica; DNA recombination; Genome structure; Mitochondrial DNA; Two dimensional agarose gel electrophoresis

Indexed keywords

BRASSICA; BRASSICA RAPA; BRASSICA RAPA SUBSP. PEKINENSIS; EMBRYOPHYTA;

EID: 70349764308     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2009.08.002     Document Type: Article

References (39)

1. Schuster W., and Brennicke A. The plant mitochondrial genome: physical structure, information content, RNA editing, and gene migration to the nucleus. Ann. Rev. Plant. Physiol. Plant Mol. Biol. 45 (1994) 61-78
2. Albert B., Godelle B., and Gouyon P.H. Evolution of the plant mitochondrial genome: dynamics of duplication and deletion of sequences. J. Mol. Evol. 46 (1998) 155-158
3. Bendich A.J. Reaching for the ring: the study of mitochondrial genome structure. Curr. Genet. 24 (1993) 279-290
4. Backert S., Nielsen B.L., and Börner T. The mystery of the rings: structure and replication of mitochondrial genomes from higher plants. Trends Plant Sci. 2 (1997) 477-483
5. Palmer J.D., and Shields C.R. Tripartite structure of the Brassica campestris mitochondrial genome. Nature 307 (1984) 437-440
6. Lonsdale D.M., Hodge T.P., and Fauron C.M.R. The physical map and organization of the mitochondrial genome from fertile cytoplasm of maize. Nucleic Acids Res. 12 (1984) 9249-9261
7. Newton K.J. Plant mitochondrial genomes: organization, expression and variation. Ann. Rev. Plant Physiol. Plant Mol. Biol. 39 (1988) 503-532
8. André C.P., Levy A.A., and Walbot V. Small repeated sequences and the structure of plant mitochondrial genomes. Trends Genet. 8 (1992) 128-132
9. Fauron C., Casper M., Gao Y., and Moore B. The maize mitochondrial genome: dynamic, yet functional. Trends Genet. 11 (1995) 228-235
10. Oldenburg D.J., and Bendich A.J. Size and structure of replicating mitochondrial DNA in cultured tobacco cells. Plant Cell 8 (1996) 447-461
11. Oldenburg D.J., and Bendich A.J. The structure of mitochondrial DNA from the liverwort, Marchantia polymorpha. J. Mol. Biol. 276 (1998) 745-758
12. Oldenburg D., and Bendich A.J. Mitochondrial DNA from the liverwort Marchantia polymorpha: circularly permuted linear molecules, head-to-tail concatemers, and a 5′ protein. J. Mol. Biol. 310 (2001) 549-562
13. Backert S., and Börner T. Phage T4-like intermediates of DNA replication and recombination in the mitochondria of the higher plant Chenopodium album (L.). Curr. Genet. 37 (2000) 304-314
14. Palmer JD J.D., Makaroff C.A., Apel I.J., and Shirzadegan M. Fluid structure of plant mitochondrial genomes: evolutionary and functional implications. In: Clegg M.T., and O'Brien S.J. (Eds). Molecular Evolution (1990), Alan R. Liss, New York 85-96
15. Mackenzie S., and McIntosh L. Higher plant mitochondria. Plant Cell 11 (1999) 571-585
16. Odahara M., Kuroiwa H., Kuroiwa T., and Sekine Y. Suppression of repeat-mediated gross mitochondrial genome rearrangements by RecA in the moss Physcomitrella patens. Plant Cell 21 (2009) 1182-1194
17. Shedge V., Arrieta-Montiel M., Christensen A.C., and Mackenzie S.A. Plant mitochondrial recombination surveillance requires unusual RecA and MutS homologs. Plant Cell 19 (2007) 1251-1264
18. Arrieta-Montiel M., Lyznik A., Woloszynska M., Janska H., Tohme J., and Mackenzie S. Tracing evolutionary and developmental implications of mitochondrial stoichiometric shifting in the common bean. Genetics 158 (2001) 851-864
19. Satoh M., Nemoto Y., Kawano S., Nagata T., Hirokawa H., and Kuroiwa T. Organization of heterogeneous mitochondrial DNA molecules in mitochondrial nuclei of cultured tobacco cells. Protoplasma 173 (1993) 112-120
20. Woloszynska M., Kmiec B., Mackiewicz P., and Janska H. Copy number of bean mitochondrial genes estimated by real-time PCR does not correlate with the number of gene loci and transcript levels. Plant Mol. Biol. 61 (2006) 1-12
21. Arimura S.I., Yamamoto J., Aida G.P., Nakazono M., and Tsutsumi N. Frequent fusion and fission of plant mitochondria with unequal nucleoid distribution. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 7805-7808
22. Small I., Suffolk R., and Leaver C.J. Evolution of plant mitochondrial genomes via substoichiometric intermediates. Cell 58 (1989) 69-76
23. Kanazawa A., Tozuka A., Kato S., Mikami T., Abe J., and Shimamoto Y. Small interspersed sequences that serve as recombination sites at the cox2 and atp6 loci in the mitochondrial genome of soybean are widely distributed in higher plants. Curr. Genet. 33 (1998) 188-198
24. Muise R.C., and Hauswirth W.H. Selective DNA amplification regulates transcript levels in plant mitochondria. Curr. Genet. 28 (1995) 113-121
25. Scissum-Gunn K.D., Gandhi M., Backert S., and Nielsen B.L. Separation of different conformations of plant mitochondrial DNA molecules by field inversion gel electrophoresis. Plant Mol. Biol. Rep. 16 (1998) 219-229
26. Heller C., and Pohl F. Field inversion gel electrophoresis with different pulsed time ramps. Nucleic Acids Res. 18 (1990) 6299-6304
27. Sambrook J., and Russell D.W. Molecular Cloning: A Laboratory Manual. third ed. (1979), Cold Spring Harbor Press, New York
28. Weiden M., Osheim Y., Beyer A., and van der Ploeg L. Chromosome structure: DNA nucleotide sequence elements of a subset of the minichromosomes of the protozoan Trypanosoma brucei. Mol. Cell Biol. 11 (1991) 3823-3834
29. Sedat J., Kelly R., and Sinsheimer R. Fractionation of nucleic acid on benzoylated-naphthoylated DEAE cellulose. J. Mol. Biol. 26 (1967) 537-540
30. Lockshon D., Zweifel S.G., Freeman-Cook L.L., Lorimer H.E., Brewer B.J., and Fangman W.L. A role for recombination junctions in the segregation of mitochondrial DNA in yeast. Cell 81 (1995) 947-955
31. Manchekar M., Scissum-Gunn K., Song D., Khazi F., McLean S.L., and Nielsen B.L. DNA recombination activity in soybean mitochondria. J. Mol. Biol. 356 (2006) 288-299
32. Palmer J.D., Shields C.R., Cohen D.B., and Orton T.J. An unusual mitochondrial DNA plasmid in the genus Brassica. Nature 301 (1983) 725-728
33. Preiser P.R., Wilson R.J.M., Moore P.W., McCready S., Hajibagheri M.A.N., Blight K.J., Strath M., and Williamson D.H. Recombination associated with replication of malarial mitochondrial DNA. EMBO J. 15 (1996) 684-693
34. Sena M.P., Revet B., and Moustacchi E. In vivo homologous recombination intermediates of yeast mitochondrial DNA analyzed by electron microscopy. Mol. Gen. Genet. 202 (1986) 421-428
35. Backert S., Dorfel P., and Borner T. Investigation of plant organellar DNAs by pulsed-field gel electrophoresis. Curr. Genet. 28 (1995) 390-399
36. Mosig G. Recombination and recombination-dependent DNA replication in bacteriophage T4. Ann. Rev. Genet. 32 (1998) 379-413
37. Backert S., Lurz R., Oyarzabal O.A., and Börner T. High content, size and distribution of single-stranded DNA in the mitochondria of Chenopodium album (L.). Plant Mol. Biol. 33 (1997) 1037-1050
38. Backert S., Dörfel P., Lurz R., and Börner T. Rolling-circle replication of mitochondrial DNA in the higher plant Chenopodium album (L.). Mol. Cell Biol. 16 (1996) 6285-6294
39. deHaas J.M., Hill J., Kors F., van der Meer B., Kool A.J., Folkerts O., and Nijkamp H.J.J. Two potential Petunia hybrida mitochondrial DNA replication origins show structural and in vitro functional homology with the animal mitochondrial DNA heavy and light strand replication origins. Curr. Genet. 20 (1991) 503-513