Phage T4-like intermediates of DNA replication and recombination in the mitochondria of the higher plant Chenopodium album (L.)

Current Genetics

Volumn 37, Issue 5, 2000, Pages 304-314

  Backert, Steffen ^a,b   Börner, Thomas ^a  

^a HUMBOLDT UNIVERSITY   (Germany)

^b MAX PLANCK INSTITUTE FOR INFECTION BIOLOGY   (Germany)

Author keywords

Invasion; Mitochondrial genome; Plasmid; Recombination; Recombination dependent replication; Rolling circle

Indexed keywords

DOUBLE STRANDED DNA; SINGLE STRANDED DNA;

ARTICLE; BACTERIOPHAGE T4; CELL GROWTH; DNA RECOMBINATION; DNA REPLICATION; DNA STRUCTURE; ELECTRON MICROSCOPY; MITOCHONDRION; NONHUMAN; PLANT; PRIORITY JOURNAL;

BACTERIOPHAGE T4; CHENOPODIACEAE; DNA REPLICATION; DNA, CIRCULAR; DNA, MITOCHONDRIAL; DNA, PLANT; MICROSCOPY, ELECTRON; MITOCHONDRIA; RECOMBINATION, GENETIC;

CHENOPODIUM ALBUM; EMBRYOPHYTA;

EID: 0342368629     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002940050532     Document Type: Article

References (73)

1. Albert B, Godelle B, Gouyon P (1998) Evolution of the plant mitochondrial genome: dynamics of duplication and deletion of sequences. J Mol Evol 46: 155-158
2. André CP, Walbot V (1995) Pulsed-field gel mapping of maize mitochondrial chromosomes. Mol Gen Genet 247: 255-263
3. Backert S (2000) Strand-switching during rolling-circle replication of plasmid-like DNA minicircles in the mitochondria of the higher plant Chenopodium album (L.). Plasmid 43: 166-170
4. Backert S, Dörfel P, Lurz R, Börner T (1996a) Rolling-circle replication in mitochondria of the higher plant Chenopodium album (L.). Mol Cell Biol 16: 6285-6294
5. Backert S, Lurz R, Börner T (1996b) Electron microscopic investigation of mitochondrial DNA from Chenopodium album (L.). Curr Genet 29: 427-436
6. Backert S, Lurz R, Oyarzabal OA, Börner T (1997a) High content, size and distribution of single-stranded DNA in the mitochondria of Chenopodium album (L.). Plant Mol Biol 33: 1037 1050
7. Backert S, Meissner K, Börner T (1997b) Unique features of the mitochondrial rolling-circle plasmid mp1 from the higher plant Chenopodium album (L.). Nucleic Acids Res 25: 582-589
8. Backert S, Nielsen BL, Börner T (1997c) The mystery of the rings: structure and replication of mitochondrial genomes from higher plants. Trends Plant Sci 2: 477-483
9. Backert S, Kunnimalaiyaan M, Börner T, Nielsen BL (1998) In vitro replication of mitochondrial plasmid mp1 from the higher plant Chenopodium album (L.): a remnant of bacterial rolling-circle and conjugative plasmids? J Mol Biol 284: 1005-1015
10. Bastia D, Sueoka N (1975) Studies on the late replication of phage lambda: rolling-circle replication of the wild-type and a partially suppressed strain, Oam29 Pam80. J Mol Biol 98: 305-320
11. Bendich AJ (1993) Reaching for the ring: the study of mitochondrial genome structure. Curr Genet 24: 279-290
12. Bendich AJ (1996) Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis. J Mol Biol 255: 564-588
13. Carpenter LR, Englund PT (1995) Kinetoplast maxicircle DNA replication in Crithidia fasciculata and Trypanosoma brucei. Mol Cell Biol 15: 6794-6803
14. Cohen A, Clarke AJ (1986) Synthesis of linear plasmid multimers in Escherichia coli K-12. J Bacteriol 167: 327-335
15. Cox MM (1998) A broadening view of recombinational DNA repair in bacteria. Genes To Cells 3: 65-78
16. Dahl R, Kates JR (1970) Intracellular structures containing vaccinia DNA: isolation and characterization. Virology 42: 453-462
17. Dannenberg R, Mosig G (1983) Early intermediates in bacteriophage T4 DNA replication and recombination. J Virol 45: 813-831
18. Dinouel N, Drissi R, Miyakawa I, Sor F, Roussel S, Fukuhara H (1993) Linear mitochondrial DNAs of yeast: closed-loop structure of the termini and possible linear-circular conversion mechanisms. Mol Cell Biol 13: 2315-2323
19. Dudareva NA, Kiseleva EV, Boyarintseva AG, Maystrenko AG, Khrystolyubova NB, Sagulnik RI (1988) Structure of the mitochondrial genome of Beta vulgaris L. Theor Appl Genet 76: 753-759
20. Eggleston AK, West SC (1996) Exchanging partners: recombination in E. coli. Trends Genet 12: 20-26
21. -] mitochondrial DNA in Saccharomyces cerevisiae. Mol Cell Biol 10: 10-15
22. Fontarnau A, Hernández-Yago J (1982) Characterization of mitochondrial DNA in Citrus. Plant Physiol 70: 1678-1682
23. Formosa T, Alberts BM (1986) DNA synthesis dependent on genetic recombination: characterization of a reaction catalyzed by purified bacteriophage T4 proteins. Cell 47: 793-806
24. Griffith JD, Comeaue L, Rosenfield S, Stansel RM, Bianchi A, Moss H, de Lange T (1999) Mammalian telomeres in a large duplex loop. Cell 97: 503-514
25. Haas de JM, Hille J, Kors F, VanDerMeer B, Kool AJ, Folkerts O, Nijkamp HJJ (1991) Two potential Petunia hybrida mitochondrial DNA replication origins show structural and functional homology with the animal mitochondrial DNA heavy and light strand replication origins. Curr Genet 20: 503-513
26. Hanson MR, Folkerts O (1992) Structure and function of the higher-plant mitochondrial genome. Int Rev Cytol 141: 129-172
27. Holliday R (1964) A mechanism for gene conversion in fungi. Genet Res 5: 282-304
28. Huberman JA (1968) Visualization of replicating mammalian and T4 bacteriophage DNA. Cold Spring Harbor Symp Quant Mol Biol 33: 509-524
29. Janska H, Sarria R, Woloszynska M, Arrieta-Montiel M, Mackenzie SA (1998) Stoichiometric shifts in the common bean mitochondrial genome leading to male sterility and spontaneous reversion to fertility. Plant Cell 10: 1163-1180
30. Kanaar R, Hoeijmakers JHJ, van Gent DC (1998) Molecular mechanisms of DNA double-strand break repair. Trends Cell Biol 8: 483-489
31. Kanazawa A, Hirai A (1994) Reversible changes in the composition of the population of mtDNAs during dedifferentiation and regeneration in tobacco. Genetics 138: 865-870
32. Kogoma T (1997) Stable DNA replication: interplay between DNA replication, homologous recombination and transcription. Microbiol Mol Biol Rev 61: 212-238
33. Koths K, Dressier D (1978) Analysis of the φX DNA replication cycle by electron microscopy. Proc Natl Acad Sci USA 75: 605-609
34. Kreuzer KN, Morrical SW (1994) Initiation of DNA replication. In: Karam J (ed) Molecular biology of bacteriophage T4. American Society of Microbiology, Washington D.C., pp 28-42
35. Kuroiwa T, Fujie M, Kuroiwa H (1992) Studies on the behavior of mitochondrial DNA. Synthesis of mitochondrial DNA occurs actively in a specific region just above the quiescent center in the root meristem of Pelargonium zonale. J Cell Sci101: 483-493
36. Lang D, Mitani M (1970) Simplified quantitative electron microscopy of biopolymers. Biopolymers 9: 373-379
37. Leon P, Macaya G (1983) Properties of DNA-rosettes and their relevance to chromosome structure. Chromosoma 88: 307-314
38. Liu LF, Davis JL, Calendar R (1981) Novel topologically knotted DNA from bacteriphage P4 capsids: studies with DNA topoisomerases. Nucleic Acids Res 9: 3979-3989
39. Lloyd RG, Sharples GJ (1992) Genetic analysis of recombination in prokaryotes. Curr Opin Genet Dev 2: 683-690
40. Locker J. Lewin A, Rabinowitz M (1979) The structure and organization of mitochondrial DNA from petite yeast. Plasmid 2: 155-181
41. Lockshon D, Zweifel SG, Freeman-Cook LL, Lorimer HE, Brewer B, Fangman W (1995) A role of recombination junctions in the segregation of mitochondrial DNA in yeast. Cell 81: 947-955
42. Lonsdale DM, Hodge TP, Fauron CMR (1984) The physical map and organization of the mitochondrial genome from fertile cytoplasm of maize. Plant Mol Biol 3: 201-206
43. Luder A, Mosig G (1982) Two alternative mechanisms for initiation of DNA replication forks in bacteriophage T4: priming RNA-polymerase and by recombination. Proc Natl Acad Sci USA 79: 1101-1105
44. Maleszka R, Skelly PJ, Clark-Walker GD (1991) Rolling-circle replication in yeast mitochondria. EMBO J 10: 3923-3929
45. Masker WE, Kuemerle NB, Allison DP (1978) In vitro packaging of bacteriophage T7 DNA synthesized in vitro. J Virol 27: 149-163
46. Morel-Deville F, Ehrlich SD (1996) Theta-type DNA replication stimulates homologous recombination in the Bacillus subtilis chromosome. Mol Microbiol 19: 587-598
47. Mosig G (1998) Recombination and recombination-dependent DNA replication in bacteriophage T4. Annu Rev Genet 32: 379-413
48. Muise RC, Hauswirth WW (1995) Selective DNA amplification regulates transcript levels in plant mitochondria. Curr Genet 28: 113-121
49. Nosek J, Tomaska L, Fukuhara H, Kovac L (1998) Linear mitochondrial genomes: 30 years down the line. Trends Genet 14: 184-188
50. Noirot P, Petit MA, Ehrlich SD (1987) Plasmid replication stimulates DNA replication in Bacillus subtilis. J Mol Biol 196: 39-48
51. Oldenburg DJ, Bendich AJ (1996) Size and structure of replicating mitochondrial DNA in cultured tobacco cells. Plant Cell 8: 447-461
52. Oldenburg DJ, Bendich AJ (1998) The structure and replication of mitochondrial DNA from the liverwort, Marchantia polymorpha. J Mol Biol 276: 745-758
53. Palmer JD, Herbon LA (1988) Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence. J Mol Evol 28: 87-97
54. Palmer JD, Shields CR (1984) Tripartite structure of the Brassica campestris mitochondrial genome. Nature 307: 437-440
55. Powling A, Knippers R (1976) Recombination of bacteriophage T7 in vivo. Mol Gen Genet 149: 63-71
56. Preiser PR, Wilson RJM, Moore PW, McCready S, Hajibagheri MAN, Blight KJ, Strath M, Williamson DH (1996) Recombination asscociated with replication of malarial mitochondrial DNA. EMBO J 15: 684-693
57. Rayko E, Goursot R (1996) Amphimeric mitochondrial genomes of petite mutants of yeast. II. A model for the amplification of amphimeric mitochondrial petite DNA. Curr Genet 30: 135-144
58. Rode A, Hartmann D, Falconet D, Lejeune B, Quetier F, Benslimane A, Henry Y, de Buyser J (1987) Extensive mitochondrial DNA variation in somatic tissue cultures initiated from wheat immature embryos. Curr Genet 12: 369-376
59. Saint Girons J, Old IG, Davidson BE (1994) Molecular biology of the Borrelia, bacteria with linear replicons. Microbiol 140: 1803-1816
60. Schmitt ME, Clayton DA (1993) Conserved features of yeast and mammalian DNA replication. Curr Opin Genet Dev 3: 769-774
61. Scissum-Gunn KD, Gandhi M, Backert S, Nielsen BL (1998) Separation of different conformations of plant mitochondrial DNA molecules by field-inversion gel electrophoresis. Plant Mol Biol Rep 16: 219-229
62. Sena EP, Revet B, Moustacchi E (1986) In vivo homologous recombination intermediates of yeast mitochondrial DNA analyzed by electron microscopy. Mol Gen Genet 202: 421-428
63. Severini A, Scraba DG, Tyrrell DLJ (1996) Branched structures in the intracellular DNA of Herpes simplex virus type 1. J Virol 70: 3169-3175
64. Small ID, Suffolk R, Leaver CJ (1989) Evolution of plant mitochondrial genomes via sub-stoichiometric intermediates. Cell 58: 69-76
65. Stahl FW (1994) The Holliday junction on its 30th anniversary. Genetics 138: 241-246
66. Suzuki T, Kawano S, Sakai A, Fujie M, Kuroiwa H, Nakamura H, Kuroiwa T (1992) Preferential mitochondrial and plastid DNA synthesis before multiple cell divisions in Nicotiana tabacum. J Cell Sci 103: 831-837
67. Unseld M, Marienfeld JR, Brandt P, Brennicke A (1997) The mitochondrial genome of Arabidopsis thaliana, Nature Genet 15: 57-61.
68. Viret JF, Bravo A, Alonso JC (1991) Recombination-dependent concatemeric plasmid replication. Microbiol Rev 55: 675-683
69. Vitart V, de Paepe R, Mathieu C, Chétrit P, Vedel F (1992) Amplification of substoichiometric recombinant mitochondrial DNA sequences in a nuclear, male-sterile mutant regenerated from protoplast culture in Nicotiana sylvestris. Mol Gen Genet 233: 193-200
70. Wahleithner JA, Wolstenholme DR (1988) Origin and direction of replication in mitochondrial plasmid DNAs of broad bean, Vicia faba. Curr Genet 14: 163-170
71. Wang B, Cheng Y-N, Li DD (1989) Some physicochemical properties of rice mitochondrial DNA. Theor Appl Genet 77: 581-586
72. Williamson DH (1975) Extensive recombination of yeast mitochondrial DNA during vegetative growth as revealed by density labelling. In: Molecular biology of nucleocytoplasmic relationships. Elsevier Science, Amsterdam, pp 95-100
73. Wolstenholme DR, Fauron CM-R (1995) Mitochondrial genome organization. In: Levings III CS, Vasil IK (eds) The molecular biology of plant mitochondria. Kluwer Academic Publishers, Dordrecht, pp 1-59