-
1
-
-
0037422613
-
Genome-based peptide fingerprint scanning
-
10.1073/pnas.0136893100, 140871, 12518051
-
Giddings M.C, Shah A.A, Gesteland R, Moore B. Genome-based peptide fingerprint scanning. Proc Natl Acad Sci USA 2003, 100:20-25. 10.1073/pnas.0136893100, 140871, 12518051.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 20-25
-
-
Giddings, M.C.1
Shah, A.A.2
Gesteland, R.3
Moore, B.4
-
2
-
-
34250330777
-
What is a gene, post-ENCODE? History and updated definition
-
10.1101/gr.6339607, 17567988
-
Gerstein M.B, Bruce C, Rozowsky J.S, Zheng D, Du J, Korbel J.O, Emanuelsson O, Zhang Z.D, Weissman S, Snyder M. What is a gene, post-ENCODE? History and updated definition. Genome Res 2007, 17:669-681. 10.1101/gr.6339607, 17567988.
-
(2007)
Genome Res
, vol.17
, pp. 669-681
-
-
Gerstein, M.B.1
Bruce, C.2
Rozowsky, J.S.3
Zheng, D.4
Du, J.5
Korbel, J.O.6
Emanuelsson, O.7
Zhang, Z.D.8
Weissman, S.9
Snyder, M.10
-
3
-
-
0029197454
-
Ultra-Structure: a design theory for complex systems and processes
-
Long J.G, Denning D.E. Ultra-Structure: a design theory for complex systems and processes. Commun ACM 1995, 38:103-120.
-
(1995)
Commun ACM
, vol.38
, pp. 103-120
-
-
Long, J.G.1
Denning, D.E.2
-
4
-
-
61949332281
-
A new notation for representing business and other rules
-
Long J.G. A new notation for representing business and other rules. Semiotica 1999, 125(1/3):215-227.
-
(1999)
Semiotica
, vol.125
, pp. 215-227
-
-
Long, J.G.1
-
7
-
-
0034957542
-
K2/Kleisli and GUS: experiments in integrated access to genomic data sources
-
Davidson S.B, Crabtree J, Brunk B.P, Schug J, Tannen V, Overton G.C, Stoeckert C.J. K2/Kleisli and GUS: experiments in integrated access to genomic data sources. IBM Systems Journal 2001, 40:512-531.
-
(2001)
IBM Systems Journal
, vol.40
, pp. 512-531
-
-
Davidson, S.B.1
Crabtree, J.2
Brunk, B.P.3
Schug, J.4
Tannen, V.5
Overton, G.C.6
Stoeckert, C.J.7
-
8
-
-
22044453632
-
Atlas - a data warehouse for integrative bioinformatics
-
554782, 15723693
-
Shah S.P, Huang Y, Xu T, Yuen M.M.S, Ling J, Ouellette B.F.F. Atlas - a data warehouse for integrative bioinformatics. BMC Bioinformatics 2005, 6(34). 554782, 15723693.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.34
-
-
Shah, S.P.1
Huang, Y.2
Xu, T.3
Yuen, M.M.S.4
Ling, J.5
Ouellette, B.F.F.6
-
9
-
-
33645958298
-
BioWarehouse: a bioinformatics database warehouse toolkit
-
1444936, 16556315
-
Lee T.J, Pouliot Y, Wagner V, Gupta P, Stringer-Calvert D.W.J, Tenenbaum J.D, Karp P.D. BioWarehouse: a bioinformatics database warehouse toolkit. BMC Bioinformatics 2006, 7(170). 1444936, 16556315.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.170
-
-
Lee, T.J.1
Pouliot, Y.2
Wagner, V.3
Gupta, P.4
Stringer-Calvert, D.W.J.5
Tenenbaum, J.D.6
Karp, P.D.7
-
10
-
-
0001957926
-
BioKleisli: a digital library for biomedical researchers
-
Davidson S.B, Overton C, Tannen V, Wong L. BioKleisli: a digital library for biomedical researchers. Int J Digit Libr 1997, 1:36-53.
-
(1997)
Int J Digit Libr
, vol.1
, pp. 36-53
-
-
Davidson, S.B.1
Overton, C.2
Tannen, V.3
Wong, L.4
-
11
-
-
0034117360
-
TAMBIS: transparent access to multiple bioinformatics information sources
-
10.1093/bioinformatics/16.2.184, 10842744
-
Stevens R, Baker P, Bechhofer S, Ng G, Jacoby A, Paton N.W, Goble C.A, Brass A. TAMBIS: transparent access to multiple bioinformatics information sources. Bioinformatics 2000, 16:184-185. 10.1093/bioinformatics/16.2.184, 10842744.
-
(2000)
Bioinformatics
, vol.16
, pp. 184-185
-
-
Stevens, R.1
Baker, P.2
Bechhofer, S.3
Ng, G.4
Jacoby, A.5
Paton, N.W.6
Goble, C.A.7
Brass, A.8
-
12
-
-
18844466577
-
SEMEDA: ontology based semantic integration of biological databases
-
10.1093/bioinformatics/btg340, 14668226
-
Köhler J, Philippi S, Lange M. SEMEDA: ontology based semantic integration of biological databases. Bioinformatics 2003, 19:2420-2427. 10.1093/bioinformatics/btg340, 14668226.
-
(2003)
Bioinformatics
, vol.19
, pp. 2420-2427
-
-
Köhler, J.1
Philippi, S.2
Lange, M.3
-
13
-
-
0038745614
-
Integrating biological databases
-
10.1038/nrg1065, 12728276
-
Stein L.D. Integrating biological databases. Nat Rev Genet 2003, 4:337-345. 10.1038/nrg1065, 12728276.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 337-345
-
-
Stein, L.D.1
-
14
-
-
49049083997
-
W3C Semantic Web Activity
-
W3C Semantic Web Activity. , http://www.w3.org/2001/sw/
-
-
-
-
15
-
-
84874650365
-
Semantic Web Health Care and Life Sciences (HCLS) Interest Group
-
Semantic Web Health Care and Life Sciences (HCLS) Interest Group. , http://www.w3.org/2001/sw/hcls/
-
-
-
-
16
-
-
34249860439
-
Advancing translational research with the Semantic Web
-
10.1186/1471-2105-8-S3-S2, 1892099, 17493285
-
Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, Marshall M.S, Ogbuji C, Rees J, Stephens S, Wong G.T, Wu E, Zaccagnini D, Hongsermeier T, Neumann E, Herman I, Cheung K.H. Advancing translational research with the Semantic Web. BMC Bioinformatics 2007, 8(Suppl 3):S2. 10.1186/1471-2105-8-S3-S2, 1892099, 17493285.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL 3
-
-
Ruttenberg, A.1
Clark, T.2
Bug, W.3
Samwald, M.4
Bodenreider, O.5
Chen, H.6
Doherty, D.7
Forsberg, K.8
Gao, Y.9
Kashyap, V.10
Kinoshita, J.11
Luciano, J.12
Marshall, M.S.13
Ogbuji, C.14
Rees, J.15
Stephens, S.16
Wong, G.T.17
Wu, E.18
Zaccagnini, D.19
Hongsermeier, T.20
Neumann, E.21
Herman, I.22
Cheung, K.H.23
more..
-
17
-
-
48249158190
-
Bio2RDF: towards a mashup to build bioinformatics knowledge systems
-
10.1016/j.jbi.2008.03.004, 18472304
-
Belleau F, Nolin M.A, Tourigny N, Rigault P, Morissette J. Bio2RDF: towards a mashup to build bioinformatics knowledge systems. J Biomed Inform 2008, 41(5):706-716. 10.1016/j.jbi.2008.03.004, 18472304.
-
(2008)
J Biomed Inform
, vol.41
, Issue.5
, pp. 706-716
-
-
Belleau, F.1
Nolin, M.A.2
Tourigny, N.3
Rigault, P.4
Morissette, J.5
-
18
-
-
0033375876
-
Organization of heterogeneous scientific data using the EAV/CR representation
-
61391, 10579606
-
Nadkarni P.M, Marenco L, Chen R, Skoufos E, Shepherd G, Miller P. Organization of heterogeneous scientific data using the EAV/CR representation. J Am Med Inform Assoc 1999, 6:478-493. 61391, 10579606.
-
(1999)
J Am Med Inform Assoc
, vol.6
, pp. 478-493
-
-
Nadkarni, P.M.1
Marenco, L.2
Chen, R.3
Skoufos, E.4
Shepherd, G.5
Miller, P.6
-
19
-
-
0033910982
-
WebEAV: automatic metadata-driven generation of web interfaces to entity-attribute-value databases
-
61439, 10887163
-
Nadkarni P.M, Brandt C.M, Marenco L. WebEAV: automatic metadata-driven generation of web interfaces to entity-attribute-value databases. J Am Med Inform Assoc 2000, 7:343-356. 61439, 10887163.
-
(2000)
J Am Med Inform Assoc
, vol.7
, pp. 343-356
-
-
Nadkarni, P.M.1
Brandt, C.M.2
Marenco, L.3
-
20
-
-
4544261295
-
Managing complex change in clinical study metadata
-
10.1197/jamia.M1511, 516245, 15187070
-
Brandt C.A, Gadagkar R, Rodriguez C, Nadkarni P.M. Managing complex change in clinical study metadata. J Am Med Inform Assoc 2004, 11:380-391. 10.1197/jamia.M1511, 516245, 15187070.
-
(2004)
J Am Med Inform Assoc
, vol.11
, pp. 380-391
-
-
Brandt, C.A.1
Gadagkar, R.2
Rodriguez, C.3
Nadkarni, P.M.4
-
22
-
-
61949174659
-
How could the notation be the limitation?
-
Long J.G. How could the notation be the limitation?. Semiotica 1999, 125(1/3):21-31.
-
(1999)
Semiotica
, vol.125
, pp. 21-31
-
-
Long, J.G.1
-
23
-
-
84885380243
-
PostgreSQL
-
PostgreSQL. , http://www.postgresql.org
-
-
-
-
24
-
-
84888292869
-
Hibernate
-
Hibernate. , http://www.hibernate.org
-
-
-
-
25
-
-
84888303359
-
Stripes Web Framework
-
Stripes Web Framework. , http://www.stripesframework.org
-
-
-
-
26
-
-
84870650314
-
UCSC Genome Bioinformatics
-
UCSC Genome Bioinformatics. , http://genome.ucsc.edu/
-
-
-
-
27
-
-
35648976118
-
The diploid genome sequence of an individaul human
-
10.1371/journal.pbio.0050254, 1964779,1964779, 17803354
-
Levy S, Sutton G, Ng P.C, Feuk L, Halpern A.L, Walenz B.P, Axelrod N, Huang J, Kirkness E.F, Denisov G, Lin Y, MacDonald J.R, Pang A.W.C, Shago M, Stockwell T.B, Tsiamouri A, Bafna V, Bansal V, Kravitz S.A, Busam D.A, Beeson K.Y, McIntosh T.C, Remington K.A, Abril J.F, Gill J, Borman J, Rogers Y.H, Frazier M.E, Scherer S.W, Strausberg R.L, Venter J.C. The diploid genome sequence of an individaul human. PLoS Biol 2007, 5:e254. 10.1371/journal.pbio.0050254, 1964779,1964779, 17803354.
-
(2007)
PLoS Biol
, vol.5
-
-
Levy, S.1
Sutton, G.2
Ng, P.C.3
Feuk, L.4
Halpern, A.L.5
Walenz, B.P.6
Axelrod, N.7
Huang, J.8
Kirkness, E.F.9
Denisov, G.10
Lin, Y.11
MacDonald, J.R.12
Pang, A.W.C.13
Shago, M.14
Stockwell, T.B.15
Tsiamouri, A.16
Bafna, V.17
Bansal, V.18
Kravitz, S.A.19
Busam, D.A.20
Beeson, K.Y.21
McIntosh, T.C.22
Remington, K.A.23
Abril, J.F.24
Gill, J.25
Borman, J.26
Rogers, Y.H.27
Frazier, M.E.28
Scherer, S.W.29
Strausberg, R.L.30
Venter, J.C.31
more..
-
28
-
-
42249087308
-
The complete genome of an individual by massively parallel DNA sequencing
-
10.1038/nature06884, 18421352
-
Wheeler D.A, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen Y.J, Makhijani V, Roth G.T, Gomes X, Tartaro K, Niazi F, Turcotte C.L, Irzyk G.P, Lupski J.R, Chinault C, Song Xz, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny D.M, Margulies M, Weinstock G.M, Gibbs R.A, Rothberg J.M. The complete genome of an individual by massively parallel DNA sequencing. Nature 2008, 452:872-876. 10.1038/nature06884, 18421352.
-
(2008)
Nature
, vol.452
, pp. 872-876
-
-
Wheeler, D.A.1
Srinivasan, M.2
Egholm, M.3
Shen, Y.4
Chen, L.5
McGuire, A.6
He, W.7
Chen, Y.J.8
Makhijani, V.9
Roth, G.T.10
Gomes, X.11
Tartaro, K.12
Niazi, F.13
Turcotte, C.L.14
Irzyk, G.P.15
Lupski, J.R.16
Chinault, C.17
Song Xz18
Liu, Y.19
Yuan, Y.20
Nazareth, L.21
Qin, X.22
Muzny, D.M.23
Margulies, M.24
Weinstock, G.M.25
Gibbs, R.A.26
Rothberg, J.M.27
more..
-
29
-
-
32544451144
-
Alternative trans-splicing: a novel mode of pre-mRNA processing
-
10.1042/BC20050002, 16417469
-
Horiuchi T, Aigaki T. Alternative trans-splicing: a novel mode of pre-mRNA processing. Biol Cell 2006, 98:135-140. 10.1042/BC20050002, 16417469.
-
(2006)
Biol Cell
, vol.98
, pp. 135-140
-
-
Horiuchi, T.1
Aigaki, T.2
-
30
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
10.1038/nature05874, 2212820, 17571346
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007, 447:799-816. 10.1038/nature05874, 2212820, 17571346.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
-
31
-
-
0034450196
-
Exploring Performance Issues for Clinical Database Organized Using an Entity-Attribute-Value Representation
-
79043, 10984467
-
Chen R.S, Nadkarni P.M, Marenco L, Levin F, Erdos J, Miller P.L. Exploring Performance Issues for Clinical Database Organized Using an Entity-Attribute-Value Representation. J Am Med Inform Assoc 2000, 7(5):475-487. 79043, 10984467.
-
(2000)
J Am Med Inform Assoc
, vol.7
, Issue.5
, pp. 475-487
-
-
Chen, R.S.1
Nadkarni, P.M.2
Marenco, L.3
Levin, F.4
Erdos, J.5
Miller, P.L.6
|