Organization of heterogeneous scientific data using the EAV/CR representation

Journal of the American Medical Informatics Association

Volumn 6, Issue 6, 1999, Pages 478-493

  Nadkarni, Phakash M ^a,b   Marenco, Luis ^a   Chen, Roland ^a   Skoufos, Emmanouil ^a   Shepherd, Gordon ^a   Miller, Perry ^a  

^a YALE UNIVERSITY   (United States)

^b YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DATA BASE; INFORMATION PROCESSING; MEDICAL RECORD; MEDICAL TECHNOLOGY; MODEL; RESEARCH; REVIEW;

EID: 0033375876     PISSN: 10675027     EISSN: None     Source Type: Journal    
DOI: 10.1136/jamia.1999.0060478     Document Type: Review

References (35)

1. Winston PH. Artificial Intelligence. 2nd ed. Reading, Mass: Addison-Wesley, 1984.
2. Dwight J, Erwin M (eds). Special Edition: Using CGI. Indianapolis, Ind: Que Corporation, 1996.
3. Huff SM, Rocha RA, Solbrig HR, Barnes MW, Schrank SP, Smith M. Linking a medical vocabulary to a clinical data model using Abstract Syntax Notation 1. 1998;37:440-52.
4. Huff SM, Berthelsen CL, Pryor TA, Dudley AS. Evaluation of a SQL model of the HELP patient database. Proc 15th Annu Symp Comput Appl Med Care. 1991:386-90.
5. Huff SM, Haug DJ, Stevens LE, Dupont CC, Pryor TA. HELP the next generation: a new client-server architecture. Proc 18th Annu Symp Comput Appl Med Care. 1994:271-5.
6. Johnson S, Cimino J, Friedman C, Hripcsak G, Clayton P. Using metadata to integrate medical knowledge in a clinical information system. Proc 14th Annu Symp Comput Appl Med Care. 1990:340-4.
7. Friedman C, Hripcsak G, Johnson S, Cimino J, Clayton P. A generalized relational schema for an integrated clinical patient database. Proc 14th Annu Symp Comput Appl Med Care. 1990:335-9.
8. Shepherd GM, Healy MD, Singer MS, et al. SENSELAB: a project in multidisciplinary, multilevel sensory integration. In: Koslow SH, Huerta MF (eds). Neuroinformatics: An Overview of the Human Brain Project. Mahwah, NJ: Lawrence Erlbaum, 1997:21-56.
9. Nadkarni PM, Brandt C, Frawley S, et al. Managing attribute-value clinical trials data using the ACT/DB client-server database system. J Am Med Inform Assoc. 1998;5(2):139-51.
10. Slezak T, Wagner M, Yeh M, et al. A database system for constructing, integrating, and displaying physical maps of chromosome 19. In: Hunter L, Shriver BD (eds). Proceedings of the 28th Hawaii International Conference on System Sciences. Los Alamitos, Calif: IEEE Computer Society Press. 1995:14-23.
11. Fasman KH, Letovsky SI, Cottingham RW, Kingsbury DT. Improvements to the GDB human genome data base. Nucl Acids Res. 1996;24(1):57-63.
12. Letovsky SI, Cottingham RW, Porter CJ, Li PWD. GDB: the human genome database. Nucl Acids Res. 1998;26(1):94-9.
13. Nadkarni PM, Cheung K-H, Castiglione C, Miller PL, Kidd KK. DNA workbench: a database package to manage regional mapping. J Comput Biol. 1996;3(2):319-29.
14. Nadkarni PM, Cheung KH. SQLGEN: an environment for rapid client-server database application development. Comput Biomed Res. 1995;28(12);479-99.
15. Nadkarni P, Brandt C. Data extraction and ad hoc query of an entity-attribute-value database. J Am Med Inform Assoc. 1998;5(6):511-27.
16. Bancilhon F, Delobel C, Kanellakis P. Building an object-oriented database system: the story of O2. San Mateo, Calif: Morgan Kaufmann, 1992.
17. Date CJ. An Introduction to Database Systems. 7th ed. Reading, Mass: Addison-Wesley, 1991.
18. Kimball R. The Data Warehousing Toolkit. New York: John Wiley, 1997.
19. Inmon WH. Building the Data Warehouse. New York: John Wiley, 1996.
20. Kimball R. Help for Dimensional Modeling. DBMS Mag. 1998;11(9):14-7.
21. Goodman N. Bill of Materials in Relational Database. InfoDB. 1990;5(1):2-13.
22. Melton J (ed). ISO-ANSI Working Draft Database Language SQL (SQL3). ISO/IEC SQL Revision. New York: American National Standards Institute, 1992.
23. Russell S, Norvig P. Artificial Intelligence: A Modern Approach. Englewood Cliffs, NJ: Prentice-Hall, 1995.
24. Cimino JJ, Hripcsak G, Johnson SB, Clayton PD. Designing an introspective, multipurpose, controlled medical vocabulary. Proc 13th Annu Symp Comput Appl Med Care. 1989: 513-8.
25. Salton G. Automatic Text Processing: The Transformation, Analysis, and Retrieval of Information by Computer. Reading, Mass: Addison-Wesley, 1989.
26. Mirsky JS, Nadkarni PM, Healy MD, Miller PL, Shepherd GM. Database tools for integrating neuronal data to facilitate construction of neuronal models. J Neurosci Methods. 1998;82(1):105-21.
27. Peterson B, Healy M, Nadkarni P, Miller P, Shepherd G. ModelDB: an environment for running and storing computational models and their results applied to neuroscience. J Am Med Inform Assoc. 1996;3(6):389-98.
28. Healy MD, Smith JE, Singer MS, et al. Olfactory receptor database (ORDB): a resource for sharing and analyzing published and unpublished data. Chem Senses. 1997;22:321-6.
29. Ullman JD. Principles of database and knowledge-base systems. Rockville, MD: Computer Science Press, 1989.
30. Date CJ. Selected Database Readings, 1985-1989. 7th ed. Reading, Mass: Addison-Wesley, 1990.
31. Hripcsak G. Writing Arden syntax medical logic modules. Comput Biol Med. 1994;24(5):331-63.
32. Hripcsak G, Ludemann P, Pryor TA, Wigertz OB, Clayton PD. Rationale for the Arden syntax. Comput Biomed Res. 1994;27(4):291-324.
33. Cheung K-H, Nadkarni P, Silverstein S, et al. PhenoDB: an integrated client/server database for linkage and population genetics. Comput Biomed Res. 1996;29:327-37.
34. Rumbaugh J, Jacobson I, Booth G. The unified modeling language reference manual. Reading, Mass: Addison-Wesley, 1999.
35. Gogolla M. An extended entity-relationship model: fundamentals and pragmatics. New York: Springer-Verlag, 1993.