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Volumn 131, Issue 12, 2009, Pages

Single-molecule pulling and the folding of donor-acceptor oligorotaxanes: Phenomenology and interpretation

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC FORCE MICROSCOPY; ATOMS; FORCE MEASUREMENT; MECHANICAL STABILITY; MOLECULAR DYNAMICS; PHASE TRANSITIONS;

EID: 70349616636     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3223729     Document Type: Article
Times cited : (32)

References (44)
  • 2
    • 0000500820 scopus 로고    scopus 로고
    • 0009-2614,. 10.1016/S0009-2614(99)00388-7
    • B. Heymann and H. Grubmüller, Chem. Phys. Lett. 0009-2614 305, 202 (1999). 10.1016/S0009-2614(99)00388-7
    • (1999) Chem. Phys. Lett. , vol.305 , pp. 202
    • Heymann, B.1    Grubmüller, H.2
  • 3
    • 0035312645 scopus 로고    scopus 로고
    • Steered molecular dynamics and mechanical functions of proteins
    • DOI 10.1016/S0959-440X(00)00194-9
    • B. Isralewitz, M. Gao, and K. Schulten, Curr. Opin. Struct. Biol. 0959-440X 11, 224 (2001). 10.1016/S0959-440X(00)00194-9 (Pubitemid 32289426)
    • (2001) Current Opinion in Structural Biology , vol.11 , Issue.2 , pp. 224-230
    • Isralewitz, B.1    Gao, M.2    Schulten, K.3
  • 4
    • 0034979287 scopus 로고    scopus 로고
    • Probing the relation between force - Lifetime - And chemistry in single molecular bonds
    • DOI 10.1146/annurev.biophys.30.1.105
    • E. Evans, Annu. Rev. Biophys. Biomol. Struct. 1056-8700 30, 105 (2001). 10.1146/annurev.biophys.30.1.105 (Pubitemid 32566158)
    • (2001) Annual Review of Biophysics and Biomolecular Structure , vol.30 , pp. 105-128
    • Evans, E.1
  • 5
    • 0035957720 scopus 로고    scopus 로고
    • Reversible unfolding of single RNA molecules by mechanical force
    • DOI 10.1126/science.1058498
    • J. Liphardt, B. Onoa, S. B. Smith, I. Tinoco, and C. Bustamante, Science 0036-8075 292, 733 (2001). 10.1126/science.1058498 (Pubitemid 32385545)
    • (2001) Science , vol.292 , Issue.5517 , pp. 733-737
    • Liphardt, J.1    Onoa, B.2    Smith, S.B.3    Tinoco Jr., I.4    Bustamante, C.5
  • 7
    • 33746675190 scopus 로고    scopus 로고
    • Single-molecule experiments in biological physics: Methods and applications
    • DOI 10.1088/0953-8984/18/32/R01, PII S0953898406875144, R01
    • F. Ritort, J. Phys.: Condens. Matter 0953-8984 18, R531 (2006). 10.1088/0953-8984/18/32/R01 (Pubitemid 44159969)
    • (2006) Journal of Physics Condensed Matter , vol.18 , Issue.32
    • Ritort, F.1
  • 14
    • 0024843595 scopus 로고
    • Molecular mechanics. The MM3 force field for hydrocarbons. 2. Vibrational frequencies and thermodynamics
    • DOI 10.1021/ja00205a002
    • J. H. Lii and N. L. Allinger, J. Am. Chem. Soc. 0002-7863 111, 8566 (1989). 10.1021/ja00205a002 (Pubitemid 20021796)
    • (1989) Journal of the American Chemical Society , vol.111 , Issue.23 , pp. 8566-8575
    • Lii, J.-H.1    Allinger, N.L.2
  • 15
    • 0024804228 scopus 로고
    • Molecular mechanics. The MM3 force field for hydrocarbons. 3. The van der Waals' potentials and crystal data for aliphatic and aromatic hydrocarbons
    • DOI 10.1021/ja00205a003
    • J. H. Lii and N. L. Allinger, J. Am. Chem. Soc. 0002-7863 111, 8576 (1989). 10.1021/ja00205a003 (Pubitemid 20021797)
    • (1989) Journal of the American Chemical Society , vol.111 , Issue.23 , pp. 8576-8582
    • Lii, J.-H.1    Allinger, N.L.2
  • 16
    • 36849122972 scopus 로고
    • 0021-9606,. 10.1063/1.1740409
    • R. W. Zwanzig, J. Chem. Phys. 0021-9606 22, 1420 (1954). 10.1063/1.1740409
    • (1954) J. Chem. Phys. , vol.22 , pp. 1420
    • Zwanzig, R.W.1
  • 17
    • 33646987405 scopus 로고
    • 0031-9007,. 10.1103/PhysRevLett.63.1195
    • A. M. Ferrenberg and R. H. Swendsen, Phys. Rev. Lett. 0031-9007 63, 1195 (1989). 10.1103/PhysRevLett.63.1195
    • (1989) Phys. Rev. Lett. , vol.63 , pp. 1195
    • Ferrenberg, A.M.1    Swendsen, R.H.2
  • 20
    • 4243754128 scopus 로고    scopus 로고
    • 0031-9007,. 10.1103/PhysRevLett.78.2690
    • C. Jarzynski, Phys. Rev. Lett. 0031-9007 78, 2690 (1997). 10.1103/PhysRevLett.78.2690
    • (1997) Phys. Rev. Lett. , vol.78 , pp. 2690
    • Jarzynski, C.1
  • 21
    • 54849185700 scopus 로고    scopus 로고
    • 1434-6028,. 10.1140/epjb/e2008-00254-2
    • C. Jarzynski, Eur. Phys. J. B 1434-6028 64, 331 (2008). 10.1140/epjb/e2008-00254-2
    • (2008) Eur. Phys. J. B , vol.64 , pp. 331
    • Jarzynski, C.1
  • 22
    • 0037036070 scopus 로고    scopus 로고
    • Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality
    • DOI 10.1126/science.1071152
    • J. Liphardt, S. Dumont, S. B. Smith, I. Tinoco, and C. Bustamante, Science 0036-8075 296, 1832 (2002). 10.1126/science.1071152 (Pubitemid 34596263)
    • (2002) Science , vol.296 , Issue.5574 , pp. 1832-1835
    • Liphardt, J.1    Dumont, S.2    Smith, S.B.3    Tinoco Jr., I.4    Bustamante, C.5
  • 24
    • 23744478437 scopus 로고    scopus 로고
    • Free energy surfaces from single-molecule force spectroscopy
    • DOI 10.1021/ar040148d
    • G. Hummer and A. Szabo, Acc. Chem. Res. 0001-4842 38, 504 (2005). 10.1021/ar040148d (Pubitemid 41128402)
    • (2005) Accounts of Chemical Research , vol.38 , Issue.7 , pp. 504-513
    • Hummer, G.1    Szabo, A.2
  • 25
    • 4143087050 scopus 로고    scopus 로고
    • 0021-9606,. 10.1063/1.1651473
    • S. Park and K. Schulten, J. Chem. Phys. 0021-9606 120, 5946 (2004). 10.1063/1.1651473
    • (2004) J. Chem. Phys. , vol.120 , pp. 5946
    • Park, S.1    Schulten, K.2
  • 26
    • 34547726774 scopus 로고    scopus 로고
    • Experimental free energy surface reconstruction from single-molecule force spectroscopy using Jarzynski's equality
    • DOI 10.1103/PhysRevLett.99.068101
    • N. C. Harris, Y. Song, and C. -H. Kiang, Phys. Rev. Lett. 0031-9007 99, 068101 (2007). 10.1103/PhysRevLett.99.068101 (Pubitemid 47230771)
    • (2007) Physical Review Letters , vol.99 , Issue.6 , pp. 068101
    • Harris, N.C.1    Song, Y.2    Kiang, C.-H.3
  • 28
    • 4243802464 scopus 로고    scopus 로고
    • 1063-651X,. 10.1103/PhysRevE.63.021906
    • H. J. Kreuzer and S. H. Payne, Phys. Rev. E 1063-651X 63, 021906 (2001). 10.1103/PhysRevE.63.021906
    • (2001) Phys. Rev. e , vol.63 , pp. 021906
    • Kreuzer, H.J.1    Payne, S.H.2
  • 29
    • 34548101355 scopus 로고    scopus 로고
    • Topography of the free-energy landscape probed via mechanical unfolding of proteins
    • DOI 10.1063/1.1931659, 234915
    • S. Kirmizialtin, L. Huang, and D. E. Makarov, J. Chem. Phys. 0021-9606 122, 234915 (2005). 10.1063/1.1931659 (Pubitemid 40925796)
    • (2005) Journal of Chemical Physics , vol.122 , Issue.23 , pp. 1-12
    • Kirmizialtin, S.1    Huang, L.2    Makarov, D.E.3
  • 31
    • 67049117733 scopus 로고    scopus 로고
    • 0027-8424,. 10.1073/pnas.0903003106
    • L. B. Freund, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 106, 8818 (2009). 10.1073/pnas.0903003106
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 8818
    • Freund, L.B.1
  • 34
    • 0029633155 scopus 로고
    • 0010-4655,. 10.1016/0010-4655(95)00053-I
    • B. Roux, Comput. Phys. Commun. 0010-4655 91, 272 (1995). 10.1016/0010-4655(95)00053-I
    • (1995) Comput. Phys. Commun. , vol.91 , pp. 272
    • Roux, B.1
  • 36
    • 0001430231 scopus 로고    scopus 로고
    • 0192-8651,. 10.1002/(SICI)1096-987X(199805)19:7<726::AID-JCC4>3.0. CO;2-S
    • S. C. Harvey, R. K. Z. Tan, and T. E. Cheatham, J. Comput. Chem. 0192-8651 19, 726 (1998). 10.1002/(SICI)1096-987X(199805)19:7<726::AID- JCC4>3.0.CO;2-S
    • (1998) J. Comput. Chem. , vol.19 , pp. 726
    • Harvey, S.C.1    Tan, R.K.Z.2    Cheatham, T.E.3
  • 38
    • 84956211161 scopus 로고
    • 0295-5075,. 10.1209/0295-5075/15/4/009
    • A. Halperin and E. B. Zhulina, Europhys. Lett. 0295-5075 15, 417 (1991). 10.1209/0295-5075/15/4/009
    • (1991) Europhys. Lett. , vol.15 , pp. 417
    • Halperin, A.1    Zhulina, E.B.2
  • 41
    • 33746579687 scopus 로고    scopus 로고
    • Thermodynamics for single-molecule stretching experiments
    • DOI 10.1021/jp061840o
    • J. M. Rubi, D. Bedeaux, and S. Kjelstrup, J. Phys. Chem. B 1089-5647 110, 12733 (2006). 10.1021/jp061840o (Pubitemid 44139466)
    • (2006) Journal of Physical Chemistry B , vol.110 , Issue.25 , pp. 12733-12737
    • Rubi, J.M.1    Bedeaux, D.2    Kjelstrup, S.3
  • 42
    • 64849113583 scopus 로고
    • 0031-9015,. 10.1143/JPSJ.17.1100
    • R. Kubo, J. Phys. Soc. Jpn. 0031-9015 17, 1100 (1962). 10.1143/JPSJ.17.1100
    • (1962) J. Phys. Soc. Jpn. , vol.17 , pp. 1100
    • Kubo, R.1
  • 44
    • 13744260911 scopus 로고    scopus 로고
    • Hydrodynamic effects in fast AFM single-molecule force measurements
    • DOI 10.1007/s00249-004-0430-3
    • H. Janovjak, J. Struckmeier, and D. J. Müller, Eur. Biophys. J. 0175-7571 34, 91 (2005). 10.1007/s00249-004-0430-3 (Pubitemid 40238922)
    • (2005) European Biophysics Journal , vol.34 , Issue.1 , pp. 91-96
    • Janovjak, H.1    Struckmeier, J.2    Muller, D.J.3


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