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Volumn , Issue , 2009, Pages

Comparative study of GRN'S inference methods based on feature selection by mutual information

Author keywords

[No Author keywords available]

Indexed keywords

ARTIFICIAL GENE NETWORKS; COMPARATIVE STUDIES; CRITERION FUNCTIONS; DIMENSIONALITY REDUCTION; FEATURE SELECTION; FEATURE SELECTION METHODS; GENETIC REGULATORY NETWORKS; GLOBAL NETWORKS; INFERENCE METHODS; INFERENCE PROBLEM; MUTUAL INFORMATIONS; TARGET GENES; TEMPORAL EXPRESSIONS;

EID: 70349492344     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/GENSIPS.2009.5174334     Document Type: Conference Paper
Times cited : (13)

References (21)
  • 3
    • 0031616241 scopus 로고    scopus 로고
    • Reveal, a general reverse engineering algorithm for inferenceof genetic network architectures
    • S. Liang, S. Fuhrman, and R. Somogyi, "Reveal, a general reverse engineering algorithm for inferenceof genetic network architectures," in Pacific Simposium on Biocomputing, 1998, vol. 3, pp. 18-29.
    • (1998) Pacific Simposium on Biocomputing , vol.3 , pp. 18-29
    • Liang, S.1    Fuhrman, S.2    Somogyi, R.3
  • 4
    • 0036740483 scopus 로고    scopus 로고
    • Identification of regulatory elements using a feature selection method
    • September
    • S. Keles, M. van-der Laan, and M. B. Eisen, "Identification of regulatory elements using a feature selection method," Bioinformatics, pp. 1167-1175, September 2002.
    • (2002) Bioinformatics , pp. 1167-1175
    • Keles, S.1    van-der Laan, M.2    Eisen, M.B.3
  • 6
    • 60849092543 scopus 로고    scopus 로고
    • Feature selection environment for genomic applications
    • F. M. Lopes, D. C. Martins-Jr, and R. M. Cesar-Jr, "Feature selection environment for genomic applications," BMC Bioinformatics, vol. 9, no. 451, 2008.
    • (2008) BMC Bioinformatics , vol.9 , Issue.451
    • Lopes, F.M.1    Martins-Jr, D.C.2    Cesar-Jr, R.M.3
  • 7
    • 85142186092 scopus 로고    scopus 로고
    • P. Mendes, W. Sha, and K. Ye, Artificial gene networks for objective comparison of analysis algorithms, Bioinformatics, 19, no. Suppl 2, pp. 122ii-129, 2003.
    • P. Mendes, W. Sha, and K. Ye, "Artificial gene networks for objective comparison of analysis algorithms," Bioinformatics, vol. 19, no. Suppl 2, pp. 122ii-129, 2003.
  • 9
    • 59949086432 scopus 로고    scopus 로고
    • minet: A R/Bioconductor package for inferring large transcriptional networks using mutual information
    • P. E. Meyer, F. Lafitte, and G. Bontempi, "minet: A R/Bioconductor package for inferring large transcriptional networks using mutual information," BMC Bioinformatics, vol. 9, no. 461, 2008.
    • (2008) BMC Bioinformatics , vol.9 , Issue.461
    • Meyer, P.E.1    Lafitte, F.2    Bontempi, G.3
  • 10
    • 0028547556 scopus 로고
    • Floating search methods in feature selection
    • P. Pudil, J. Novovičová, and J. Kittler, "Floating search methods in feature selection," Pattern Recogn. Lett., vol. 15, no. 11, pp. 1119-1125, 1994.
    • (1994) Pattern Recogn. Lett , vol.15 , Issue.11 , pp. 1119-1125
    • Pudil, P.1    Novovičová, J.2    Kittler, J.3
  • 11
    • 0036013593 scopus 로고    scopus 로고
    • Statistical mechanics of complex networks
    • R. Albert and A. L. Barabási, "Statistical mechanics of complex networks," Rev. Mod. Phys., vol. 74, no. 1, pp. 47-97, 2002.
    • (2002) Rev. Mod. Phys , vol.74 , Issue.1 , pp. 47-97
    • Albert, R.1    Barabási, A.L.2
  • 12
    • 0038718854 scopus 로고    scopus 로고
    • The structure and function of complex networks
    • M. E. J. Newman, "The structure and function of complex networks," SIAM Review, vol. 45, no. 2, pp. 167-256, 2003.
    • (2003) SIAM Review , vol.45 , Issue.2 , pp. 167-256
    • Newman, M.E.J.1
  • 13
    • 33947724499 scopus 로고    scopus 로고
    • Characterization of complex networks: A survey of measurements
    • L. F. Costa and et al., "Characterization of complex networks: a survey of measurements," Advances in Physics, vol. 56, no. 1, pp. 167-242, 2007.
    • (2007) Advances in Physics , vol.56 , Issue.1 , pp. 167-242
    • Costa, L.F.1    and et, al.2
  • 14
    • 34249999887 scopus 로고    scopus 로고
    • Predicting the connectivity of primate cortical networks from topological and spatial node properties
    • L. F. Costa, M. Kaiser, and C. C. Hilgetag, "Predicting the connectivity of primate cortical networks from topological and spatial node properties," BMC Systems Biology, vol. 1, no. 16, 2007.
    • (2007) BMC Systems Biology , vol.1 , Issue.16
    • Costa, L.F.1    Kaiser, M.2    Hilgetag, C.C.3
  • 15
    • 33846400424 scopus 로고    scopus 로고
    • Large-scale mapping and validation of escherichia coli transcriptional regulation from a compendium of expression profiles
    • J. Faith and et. al, "Large-scale mapping and validation of escherichia coli transcriptional regulation from a compendium of expression profiles," PLoS Biology, vol. 5, no. 1, pp. 259-265, 2007.
    • (2007) PLoS Biology , vol.5 , Issue.1 , pp. 259-265
    • Faith, J.1    and et., al.2
  • 16
    • 0033655775 scopus 로고    scopus 로고
    • Mutual information relevance networks: Functional genomic clustering using pairwise entropy measurements
    • A. Butte and I. Kohane, "Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements," in Pacific Symposium on Biocomputing, 2000, pp. 418-429.
    • (2000) Pacific Symposium on Biocomputing , pp. 418-429
    • Butte, A.1    Kohane, I.2
  • 17
    • 33947305781 scopus 로고    scopus 로고
    • Aracne: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
    • no. Suppl
    • A. A. Margolin and et. al, "Aracne: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context," BMC Bioinformatics, vol. 7, no. Suppl 1, 2006.
    • (2006) BMC Bioinformatics , vol.7 , Issue.1
    • Margolin, A.A.1    and et., al.2
  • 18
    • 84889281816 scopus 로고
    • Elements of information theory
    • John Wiley & Sons, New York, NY, USA
    • T. M. Cover and J. A. Thomas, "Elements of information theory," in Wiley Series in Telecommunications. John Wiley & Sons, New York, NY, USA, 1991.
    • (1991) Wiley Series in Telecommunications
    • Cover, T.M.1    Thomas, J.A.2
  • 19
    • 24344458137 scopus 로고    scopus 로고
    • Feature selection based on mutual information: Criteria of max-dependency, maxrelevance, and min-redundancy
    • H. Peng, F. Long, and C. Ding, "Feature selection based on mutual information: criteria of max-dependency, maxrelevance, and min-redundancy," IEEE Trans. on PAMI, vol. 27, no. 8, pp. 1226-1238, 2005.
    • (2005) IEEE Trans. on PAMI , vol.27 , Issue.8 , pp. 1226-1238
    • Peng, H.1    Long, F.2    Ding, C.3
  • 20
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly constructed nets
    • March
    • S. A. Kauffman, "Metabolic stability and epigenesis in randomly constructed nets," Journal of Theoretical Biology, vol. 22, no. 3, pp. 437-467, March 1969.
    • (1969) Journal of Theoretical Biology , vol.22 , Issue.3 , pp. 437-467
    • Kauffman, S.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.