Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome

Proceedings of the National Academy of Sciences of the United States of America

Volumn 106, Issue 37, 2009, Pages 15639-15644

  Yang, Xiaojing ^a   Kuk, Jane ^a   Moffat, Keith ^a,b  

^a UNIVERSITY OF CHICAGO   (United States)

^b UNIVERSITY OF CHICAGO   (United States)

Author keywords

Biliverdin; Photoconversion; Red light photoreceptor

Indexed keywords

BACTERIOPHYTOCHROME; BILIVERDIN; PHYTOCHROME; SERINE DERIVATIVE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIUM MUTANT; CHROMATOPHORE; COMPARATIVE STUDY; CONFORMATION; CONTROLLED STUDY; CORRELATIONAL STUDY; CRYOPROTECTION; CRYSTAL; CRYSTAL STRUCTURE; FAR RED LIGHT; MODEL; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; RED LIGHT; SITE DIRECTED MUTAGENESIS; WILD TYPE;

AMINO ACID SUBSTITUTION; BACTERIAL PROTEINS; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PHOTOCHEMICAL PROCESSES; PHOTORECEPTORS, MICROBIAL; PHYTOCHROME; PROTEIN CONFORMATION; PSEUDOMONAS AERUGINOSA; SPECTROPHOTOMETRY; STATIC ELECTRICITY;

FUNGI; PSEUDOMONAS AERUGINOSA;

EID: 70349461175     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0902178106     Document Type: Article

References (30)

1. Montgomery BL, Lagarias JC (2002) Phytochrome ancestry: Sensors of bilins and light. Trends Plant Sci 7:357-366.
2. Hughes J, Lamparter T (1999) Prokaryotes and phytochrome. The connection to chromophores and signaling. Plant Physiol 121:1059-1068. (Pubitemid 30018493)
3. Davis SJ, Vener AV, Vierstra RD (1999) Bacteriophytochromes: Phytochrome-like photoreceptors from nonphotosynthetic eubacteria. Science 286:2517-2520. (Pubitemid 30026342)
4. Bhoo SH, Davis SJ, Walker J, Karniol B, Vierstra RD (2001) Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore. Nature 414:776-779. (Pubitemid 34000778)
5. Rockwell NC, Su YS, Lagarias JC (2006) Phytochrome structure and signaling mechanisms. Annu Rev Plant Biol 57:837-858.
6. Rockwell NC, Lagarias JC (2006) The structure of phytochrome: A picture is worth a thousand spectra. Plant Cell 18:4-14. (Pubitemid 43951311)
7. Noack S, Michael N, Rosen R, Lamparter T (2007) Protein conformational changes of Agrobacterium phytochrome Agp1 during chromophore assembly and photoconversion. Biochemistry 46:4164-4176. (Pubitemid 46536078)
8. Mroginski MA, Murgida DH, Hildebrandt P (2007) The chromophore structural changes during the photocycle of phytochrome: A combined resonance Raman and quantum chemical approach. Acc Chem Res 40:258-266.
9. Hahn J, Strauss HM, Schmieder P (2008) Heteronuclear NMR investigation on the structure and dynamics of the chromophore binding pocket of the cyanobacterial phytochrome Cph1. J Am Chem Soc 130:11170-11178.
10. Rohmer T, et al. (2008) Light-induced chromophore activity and signal transduction in phytochromes observed by 13C and 15N magic-angle spinning NMR. Proc Natl Acad Sci USA 105:15229-15234.
11. Esteban B, Carrascal M, Abian J, Lamparter T (2005) Light-induced conformational changes of cyanobacterial phytochrome Cph1 probed by limited proteolysis and autophosphorylation. Biochemistry 44:450-461. (Pubitemid 40105475)
12. Yang X, Kuk J, Moffat K (2008) Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction. Proc Natl Acad Sci USA 105:14715-14720.
13. Essen LO, Mailliet J, Hughes J (2008) The structure of a complete phytochrome sensory module in the Pr ground state. Proc Natl Acad Sci USA 105:14709-14714.
14. Yang X, Stojkovic EA, Kuk J, Moffat K (2007) Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion. Proc Natl Acad Sci USA 104:12571-12576. (Pubitemid 47206179)
15. Giraud E, et al. (2005) A new type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomonas palustris. J Biol Chem 280:32389-32397. (Pubitemid 41361849)
16. Karniol B, Vierstra RD (2003) The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties. Proc Natl Acad Sci USA 100:2807-2812. (Pubitemid 36297580)
17. Wagner JR, et al. (2008) Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes. J Biol Chem 283:12212-12226.
18. Hahn J, et al. (2006) Probing protein-chromophore interactions in Cph1 phytochrome by mutagenesis. FEBS J 273:1415-1429. (Pubitemid 44029107)
19. Cornilescu G, Ulijasz AT, Cornilescu CC, Markley JL, VierstraRD(2008) Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state. J Mol Biol 383:403-413.
20. Fischer AJ, Lagarias JC (2004) Harnessing phytochrome's glowing potential. Proc Natl Acad Sci USA 101:17334-17339.
21. Su YS, Lagarias JC (2007) Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants. Plant Cell 19:2124-2139.
22. Fischer AJ, et al. (2005) Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes. Biochemistry 44:15203-15215.
23. Savikhin S, Wells T, Song PS, Struve WS (1993) Ultrafast pump-probe spectroscopy of native etiolated oat phytochrome. Biochemistry 32:7512-7518. (Pubitemid 23232326)
24. Chen E, Lapko VN, Lewis JW, Song PS, Kliger DS (1996) Mechanism of native oat phytochrome photoreversion: A time-resolved absorption investigation. Biochemistry 35:843-850. (Pubitemid 26034568)
25. Terwilliger TC (2000) Maximum-likelihood density modification. Acta Crystallogr D 56:965-972.
26. Vonrhein C, Blanc E, Roversi P, Bricogne G (2005) Automated structure solution with autoSHARP. Crystallographic Methods, ed Doublie S (Humana, Totowa, NJ).
27. Brunger AT, Adams PD, Clore M, Delano WL (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D 54:905-921.
28. Vagin AA, et al. (2004)REFMAC5dictionary: Organization of prior chemical knowledge and guidelines for its use. Acta Crystallogr D 60:2184-2195.
29. Adams PD, et al. (2002) PHENIX: Building new software for automated crystallographic structure determination. Acta Crystallogr D 58:1948-1954.
30. Emsley P, Cowtan K (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr D 60:2126-2132. (Pubitemid 41742764)